RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 IL16Q14005 1332 aa16.67■□□□□ 0.26
VPS4A-204ENST00000566354 AMPHP49418 695 aa16.67■□□□□ 0.26
VPS4A-204ENST00000566354 TSR2Q969E8 191 aaKnown RBP16.67■□□□□ 0.26
VPS4A-204ENST00000566354 LTN1O94822 1766 aa16.66■□□□□ 0.26
VPS4A-204ENST00000566354 TRIM27P14373 513 aa16.66■□□□□ 0.26
VPS4A-204ENST00000566354 EIF4A2Q14240 407 aaKnown RBP16.66■□□□□ 0.26
VPS4A-204ENST00000566354 TNS3Q68CZ2 1445 aa16.66■□□□□ 0.26
VPS4A-204ENST00000566354 GCP02774 474 aa16.65■□□□□ 0.26
VPS4A-204ENST00000566354 ADRA2BP18089 450 aa16.65■□□□□ 0.26
VPS4A-204ENST00000566354 ATF7IPQ6VMQ6 1270 aa16.65■□□□□ 0.26
VPS4A-204ENST00000566354 TRIM35Q9UPQ4 493 aa16.65■□□□□ 0.26
VPS4A-204ENST00000566354 SPATA31A3Q5VYP0 1347 aa16.65■□□□□ 0.26
VPS4A-204ENST00000566354 FLT4P35916 1363 aa16.65■□□□□ 0.26
VPS4A-204ENST00000566354 SSH1Q8WYL5 1049 aa16.65■□□□□ 0.26
VPS4A-204ENST00000566354 SOS2Q07890 1332 aaPredicted RBP16.65■□□□□ 0.26
VPS4A-204ENST00000566354 SLIT3O75094 1523 aa16.65■□□□□ 0.26
VPS4A-204ENST00000566354 MED1Q15648 1581 aaPredicted RBP16.65■□□□□ 0.26
VPS4A-204ENST00000566354 KCNH5Q8NCM2 988 aa16.64■□□□□ 0.25
VPS4A-204ENST00000566354 ZBTB7CA1YPR0 619 aa16.64■□□□□ 0.25
VPS4A-204ENST00000566354 HMOX1P09601 288 aa16.64■□□□□ 0.25
VPS4A-204ENST00000566354 HOXC9P31274 260 aa16.64■□□□□ 0.25
VPS4A-204ENST00000566354 CABLES1Q8TDN4 633 aa16.64■□□□□ 0.25
VPS4A-204ENST00000566354 C22orf23Q9BZE7 217 aa16.64■□□□□ 0.25
VPS4A-204ENST00000566354 L1TD1Q5T7N2 865 aaKnown RBP16.63■□□□□ 0.25
VPS4A-204ENST00000566354 FAM43AQ8N2R8 423 aa16.63■□□□□ 0.25
VPS4A-204ENST00000566354 PNNQ9H307 717 aaKnown RBP16.63■□□□□ 0.25
VPS4A-204ENST00000566354 ITPRIPQ8IWB1 547 aa16.63■□□□□ 0.25
VPS4A-204ENST00000566354 SMC5Q8IY18 1101 aa16.63■□□□□ 0.25
VPS4A-204ENST00000566354 NHSL1Q5SYE7 1610 aa16.63■□□□□ 0.25
VPS4A-204ENST00000566354 ROBO1Q9Y6N7 1651 aa16.62■□□□□ 0.25
VPS4A-204ENST00000566354 IPO8O15397 1037 aaKnown RBP16.62■□□□□ 0.25
VPS4A-204ENST00000566354 RSPH6AQ9H0K4 717 aa16.61■□□□□ 0.25
VPS4A-204ENST00000566354 NOB1Q9ULX3 412 aaKnown RBP16.61■□□□□ 0.25
VPS4A-204ENST00000566354 ARHGEF25Q86VW2 580 aa16.61■□□□□ 0.25
VPS4A-204ENST00000566354 KIF24Q5T7B8 1368 aa16.6■□□□□ 0.25
VPS4A-204ENST00000566354 KIF16BQ96L93 1317 aa16.6■□□□□ 0.25
VPS4A-204ENST00000566354 FCHSD2O94868 740 aa16.6■□□□□ 0.25
VPS4A-204ENST00000566354 PRKAR2BP31323 418 aa16.6■□□□□ 0.25
VPS4A-204ENST00000566354 RIPK4P57078 832 aa16.6■□□□□ 0.25
VPS4A-204ENST00000566354 ZC3H6P61129 1189 aaKnown RBP16.6■□□□□ 0.25
VPS4A-204ENST00000566354 ZBTB40Q9NUA8 1239 aa16.6■□□□□ 0.25
VPS4A-204ENST00000566354 ARHGEF10O15013 1369 aa16.6■□□□□ 0.25
VPS4A-204ENST00000566354 PHRF1Q9P1Y6 1649 aaKnown RBP16.6■□□□□ 0.25
VPS4A-204ENST00000566354 MFAP1P55081 439 aaKnown RBP16.59■□□□□ 0.25
VPS4A-204ENST00000566354 AEBP1Q8IUX7 1158 aa16.59■□□□□ 0.25
VPS4A-204ENST00000566354 LTV1Q96GA3 475 aaPredicted RBP16.59■□□□□ 0.25
VPS4A-204ENST00000566354 IP6K1Q92551 441 aa16.59■□□□□ 0.25
VPS4A-204ENST00000566354 CHMP5Q9NZZ3 219 aa16.59■□□□□ 0.25
VPS4A-204ENST00000566354 RGPD1P0DJD0 1748 aa16.59■□□□□ 0.25
VPS4A-204ENST00000566354 CRYBG1Q9Y4K1 1723 aa16.59■□□□□ 0.25
VPS4A-204ENST00000566354 ALDH1L2Q3SY69 923 aa16.58■□□□□ 0.25
VPS4A-204ENST00000566354 RTL1A6NKG5 1358 aa16.58■□□□□ 0.25
VPS4A-204ENST00000566354 MCM4P33991 863 aa16.58■□□□□ 0.24
VPS4A-204ENST00000566354 SULT6B1Q6IMI4 303 aa16.58■□□□□ 0.24
VPS4A-204ENST00000566354 TMEM57Q8N5G2 664 aa16.58■□□□□ 0.24
VPS4A-204ENST00000566354 PHACTR3Q96KR7 559 aa16.57■□□□□ 0.24
VPS4A-204ENST00000566354 EYA1Q99502 592 aa16.57■□□□□ 0.24
VPS4A-204ENST00000566354 PDE4CQ08493 712 aa16.56■□□□□ 0.24
VPS4A-204ENST00000566354 ZNF428Q96B54 188 aa16.56■□□□□ 0.24
VPS4A-204ENST00000566354 PDIA4P13667 645 aaKnown RBP16.56■□□□□ 0.24
VPS4A-204ENST00000566354 PIP4K2BP78356 416 aa16.56■□□□□ 0.24
VPS4A-204ENST00000566354 NUCB1Q02818 461 aa16.56■□□□□ 0.24
VPS4A-204ENST00000566354 AXIN2Q9Y2T1 843 aa16.56■□□□□ 0.24
VPS4A-204ENST00000566354 TOM1O60784 492 aa16.54■□□□□ 0.24
VPS4A-204ENST00000566354 BRPF1P55201 1214 aaPredicted RBP16.54■□□□□ 0.24
VPS4A-204ENST00000566354 SPRYD3Q8NCJ5 442 aa16.54■□□□□ 0.24
VPS4A-204ENST00000566354 RGPD5Q99666 1765 aa16.54■□□□□ 0.24
VPS4A-204ENST00000566354 HSCBQ8IWL3 235 aa16.54■□□□□ 0.24
VPS4A-204ENST00000566354 IGSF1Q8N6C5 1336 aa16.54■□□□□ 0.24
VPS4A-204ENST00000566354 AHDC1Q5TGY3 1603 aaPredicted RBP16.54■□□□□ 0.24
VPS4A-204ENST00000566354 TAOK2Q9UL54 1235 aa16.53■□□□□ 0.24
VPS4A-204ENST00000566354 UBAP1LF5GYI3 381 aa16.53■□□□□ 0.24
VPS4A-204ENST00000566354 RBM25P49756 843 aaKnown RBP16.53■□□□□ 0.24
VPS4A-204ENST00000566354 CHRNA2Q15822 529 aa16.53■□□□□ 0.24
VPS4A-204ENST00000566354 KIAA0232Q92628 1395 aa16.53■□□□□ 0.24
VPS4A-204ENST00000566354 RGPD2P0DJD1 1756 aa16.52■□□□□ 0.24
VPS4A-204ENST00000566354 GOLGA6L3A6NEY3 463 aa16.52■□□□□ 0.24
VPS4A-204ENST00000566354 CHMP4BQ9H444 224 aaKnown RBP16.52■□□□□ 0.24
VPS4A-204ENST00000566354 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.52■□□□□ 0.24
VPS4A-204ENST00000566354 FGD1P98174 961 aa16.52■□□□□ 0.23
VPS4A-204ENST00000566354 USHBP1Q8N6Y0 703 aa16.52■□□□□ 0.23
VPS4A-204ENST00000566354 ABCA3Q99758 1704 aa16.51■□□□□ 0.23
VPS4A-204ENST00000566354 FSD2A1L4K1 749 aa16.51■□□□□ 0.23
VPS4A-204ENST00000566354 CHD1LQ86WJ1 897 aa16.51■□□□□ 0.23
VPS4A-204ENST00000566354 SNX21Q969T3 373 aa16.51■□□□□ 0.23
VPS4A-204ENST00000566354 LRRC59Q96AG4 307 aaKnown RBP16.51■□□□□ 0.23
VPS4A-204ENST00000566354 NBPF6Q5VWK0 638 aa16.51■□□□□ 0.23
VPS4A-204ENST00000566354 NBPF4Q96M43 638 aa16.51■□□□□ 0.23
VPS4A-204ENST00000566354 KDRP35968 1356 aa16.51■□□□□ 0.23
VPS4A-204ENST00000566354 COL18A1P39060 1754 aa16.5■□□□□ 0.23
VPS4A-204ENST00000566354 ANKRD24Q8TF21 1146 aa16.5■□□□□ 0.23
VPS4A-204ENST00000566354 TRAK2O60296 914 aa16.5■□□□□ 0.23
VPS4A-204ENST00000566354 HAP1P54257 671 aaPredicted RBP16.5■□□□□ 0.23
VPS4A-204ENST00000566354 ARHGAP45Q92619 1136 aa16.5■□□□□ 0.23
VPS4A-204ENST00000566354 CPDO75976 1380 aa16.49■□□□□ 0.23
VPS4A-204ENST00000566354 NFE2L2Q16236 605 aa16.49■□□□□ 0.23
VPS4A-204ENST00000566354 BMP2KLQ5H9B9 411 aa16.49■□□□□ 0.23
VPS4A-204ENST00000566354 LNPKQ9C0E8 428 aa16.49■□□□□ 0.23
VPS4A-204ENST00000566354 ZMYND15Q9H091 742 aa16.49■□□□□ 0.23
VPS4A-204ENST00000566354 PHLPP1O60346 1717 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms