RNA–Protein interactions for RNA: ENST00000558253.5

SPG11-209, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 879 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-209ENST00000558253 EIF5BO60841 1220 aaKnown RBP10.57□□□□□ -0.72
SPG11-209ENST00000558253 IGHDP01880 384 aa10.57□□□□□ -0.72
SPG11-209ENST00000558253 PRKAR2BP31323 418 aa10.57□□□□□ -0.72
SPG11-209ENST00000558253 MKRN3Q13064 507 aaKnown RBP10.57□□□□□ -0.72
SPG11-209ENST00000558253 C8orf34Q49A92 452 aa10.57□□□□□ -0.72
SPG11-209ENST00000558253 SCUBE2Q9NQ36 999 aa10.57□□□□□ -0.72
SPG11-209ENST00000558253 PTCH1Q13635 1447 aa10.57□□□□□ -0.72
SPG11-209ENST00000558253 TTC21BQ7Z4L5 1316 aa10.57□□□□□ -0.72
SPG11-209ENST00000558253 MON2Q7Z3U7 1717 aa10.56□□□□□ -0.72
SPG11-209ENST00000558253 SEC24BO95487 1268 aa10.56□□□□□ -0.72
SPG11-209ENST00000558253 IRX5P78411 483 aaPredicted RBP10.56□□□□□ -0.72
SPG11-209ENST00000558253 HS6ST3Q8IZP7 471 aa10.56□□□□□ -0.72
SPG11-209ENST00000558253 UPF2Q9HAU5 1272 aaKnown RBP10.56□□□□□ -0.72
SPG11-209ENST00000558253 STK24Q9Y6E0 443 aa10.56□□□□□ -0.72
SPG11-209ENST00000558253 KIF24Q5T7B8 1368 aa10.55□□□□□ -0.72
SPG11-209ENST00000558253 USP31Q70CQ4 1352 aa10.55□□□□□ -0.72
SPG11-209ENST00000558253 ROBO2Q9HCK4 1378 aa10.55□□□□□ -0.72
SPG11-209ENST00000558253 ZNF853P0CG23 659 aa10.55□□□□□ -0.72
SPG11-209ENST00000558253 RTL5Q5HYW3 569 aaPredicted RBP10.55□□□□□ -0.72
SPG11-209ENST00000558253 ILDR1Q86SU0 546 aaPredicted RBP10.55□□□□□ -0.72
SPG11-209ENST00000558253 NME9Q86XW9 330 aa10.55□□□□□ -0.72
SPG11-209ENST00000558253 SSH1Q8WYL5 1049 aa10.55□□□□□ -0.72
SPG11-209ENST00000558253 CFAP44Q96MT7 982 aa10.55□□□□□ -0.72
SPG11-209ENST00000558253 COLQQ9Y215 455 aaPredicted RBP10.55□□□□□ -0.72
SPG11-209ENST00000558253 POTEMA6NI47 508 aa10.54□□□□□ -0.72
SPG11-209ENST00000558253 RLBP1P12271 317 aa10.54□□□□□ -0.72
SPG11-209ENST00000558253 NPM2Q86SE8 214 aaKnown RBP10.54□□□□□ -0.72
SPG11-209ENST00000558253 EFCAB3Q8N7B9 438 aa10.54□□□□□ -0.72
SPG11-209ENST00000558253 TSR2Q969E8 191 aaKnown RBP10.54□□□□□ -0.72
SPG11-209ENST00000558253 AKAP12Q02952 1782 aa10.54□□□□□ -0.72
SPG11-209ENST00000558253 LRRC7Q96NW7 1537 aa10.53□□□□□ -0.72
SPG11-209ENST00000558253 ANKARQ7Z5J8 1434 aa10.53□□□□□ -0.72
SPG11-209ENST00000558253 TRIM27P14373 513 aa10.53□□□□□ -0.72
SPG11-209ENST00000558253 RGS3P49796 1198 aa10.53□□□□□ -0.72
SPG11-209ENST00000558253 OCEL1Q9H607 264 aa10.53□□□□□ -0.72
SPG11-209ENST00000558253 PLSCR2Q9NRY7 297 aa10.53□□□□□ -0.72
SPG11-209ENST00000558253 NOB1Q9ULX3 412 aaKnown RBP10.53□□□□□ -0.72
SPG11-209ENST00000558253 PCDHB15Q9Y5E8 787 aa10.53□□□□□ -0.72
SPG11-209ENST00000558253 C3P01024 1663 aa10.53□□□□□ -0.72
SPG11-209ENST00000558253 ITSN1Q15811 1721 aa10.53□□□□□ -0.72
SPG11-209ENST00000558253 USP6P35125 1406 aa10.52□□□□□ -0.73
SPG11-209ENST00000558253 SOX12O15370 315 aa10.52□□□□□ -0.73
SPG11-209ENST00000558253 LTKP29376 864 aa10.52□□□□□ -0.73
SPG11-209ENST00000558253 BECN1Q14457 450 aa10.52□□□□□ -0.73
SPG11-209ENST00000558253 API5Q9BZZ5 524 aaKnown RBP10.52□□□□□ -0.73
SPG11-209ENST00000558253 DNAJC5Q9H3Z4 198 aa10.52□□□□□ -0.73
SPG11-209ENST00000558253 ZBTB40Q9NUA8 1239 aa10.52□□□□□ -0.73
SPG11-209ENST00000558253 ACEP12821 1306 aa10.52□□□□□ -0.73
SPG11-209ENST00000558253 PRR36Q9H6K5 1346 aa10.52□□□□□ -0.73
SPG11-209ENST00000558253 OVOS2A0A0J9YW53 1432 aa10.51□□□□□ -0.73
SPG11-209ENST00000558253 OVOS2Q6IE36 1432 aa10.51□□□□□ -0.73
SPG11-209ENST00000558253 SSH2Q76I76 1423 aa10.51□□□□□ -0.73
SPG11-209ENST00000558253 VAMP4O75379 141 aa10.51□□□□□ -0.73
SPG11-209ENST00000558253 PRKCSHP14314 528 aaPredicted RBP10.51□□□□□ -0.73
SPG11-209ENST00000558253 POTEGQ6S5H5 508 aa10.51□□□□□ -0.73
SPG11-209ENST00000558253 ITPRIPQ8IWB1 547 aa10.51□□□□□ -0.73
SPG11-209ENST00000558253 SMC5Q8IY18 1101 aa10.51□□□□□ -0.73
SPG11-209ENST00000558253 PDZRN3Q9UPQ7 1066 aa10.51□□□□□ -0.73
SPG11-209ENST00000558253 AMOTL2Q9Y2J4 779 aa10.51□□□□□ -0.73
SPG11-209ENST00000558253 EMILIN1Q9Y6C2 1016 aa10.51□□□□□ -0.73
SPG11-209ENST00000558253 NRKQ7Z2Y5 1582 aa10.51□□□□□ -0.73
SPG11-209ENST00000558253 TOPAZ1Q8N9V7 1692 aa10.5□□□□□ -0.73
SPG11-209ENST00000558253 HTATSF1O43719 755 aaKnown RBP10.5□□□□□ -0.73
SPG11-209ENST00000558253 GCC1Q96CN9 775 aa10.5□□□□□ -0.73
SPG11-209ENST00000558253 PHACTR3Q96KR7 559 aa10.5□□□□□ -0.73
SPG11-209ENST00000558253 BCL2L13Q9BXK5 485 aa10.5□□□□□ -0.73
SPG11-209ENST00000558253 SOS1Q07889 1333 aaPredicted RBP10.5□□□□□ -0.73
SPG11-209ENST00000558253 ARHGEF10O15013 1369 aa10.5□□□□□ -0.73
SPG11-209ENST00000558253 KIAA0232Q92628 1395 aa10.5□□□□□ -0.73
SPG11-209ENST00000558253 MRPL50Q8N5N7 158 aaKnown RBP10.49□□□□□ -0.73
SPG11-209ENST00000558253 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.49□□□□□ -0.73
SPG11-209ENST00000558253 MAP2P11137 1827 aaKnown RBP10.49□□□□□ -0.73
SPG11-209ENST00000558253 PTPRUQ92729 1446 aa10.49□□□□□ -0.73
SPG11-209ENST00000558253 HMOX1P09601 288 aa10.48□□□□□ -0.73
SPG11-209ENST00000558253 PLCG2P16885 1265 aa10.48□□□□□ -0.73
SPG11-209ENST00000558253 EIF4A2Q14240 407 aaKnown RBP10.48□□□□□ -0.73
SPG11-209ENST00000558253 TMEM57Q8N5G2 664 aa10.48□□□□□ -0.73
SPG11-209ENST00000558253 PDCD7Q8N8D1 485 aaKnown RBP10.48□□□□□ -0.73
SPG11-209ENST00000558253 CHMP4AQ9BY43 222 aa10.48□□□□□ -0.73
SPG11-209ENST00000558253 BABAM1Q9NWV8 329 aa10.48□□□□□ -0.73
SPG11-209ENST00000558253 SBNO1A3KN83 1393 aa10.48□□□□□ -0.73
SPG11-209ENST00000558253 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.47□□□□□ -0.73
SPG11-209ENST00000558253 CHL1O00533 1208 aa10.47□□□□□ -0.73
SPG11-209ENST00000558253 TWISTNBQ3B726 338 aaPredicted RBP10.47□□□□□ -0.73
SPG11-209ENST00000558253 FAM163AQ96GL9 167 aaPredicted RBP10.47□□□□□ -0.73
SPG11-209ENST00000558253 MBIPQ9NS73 344 aa10.47□□□□□ -0.73
SPG11-209ENST00000558253 FLT4P35916 1363 aa10.47□□□□□ -0.73
SPG11-209ENST00000558253 ZBTB7BO15156 539 aaPredicted RBP10.46□□□□□ -0.73
SPG11-209ENST00000558253 NUCB1Q02818 461 aa10.46□□□□□ -0.73
SPG11-209ENST00000558253 RRS1Q15050 365 aaKnown RBP10.46□□□□□ -0.73
SPG11-209ENST00000558253 SULT6B1Q6IMI4 303 aa10.46□□□□□ -0.73
SPG11-209ENST00000558253 NGDNQ8NEJ9 315 aaKnown RBP10.46□□□□□ -0.73
SPG11-209ENST00000558253 GAS2L2Q8NHY3 880 aa10.46□□□□□ -0.73
SPG11-209ENST00000558253 LAS1LQ9Y4W2 734 aaKnown RBP10.46□□□□□ -0.73
SPG11-209ENST00000558253 ABCC4O15439 1325 aa10.46□□□□□ -0.73
SPG11-209ENST00000558253 PTPRCP08575 1304 aa10.46□□□□□ -0.73
SPG11-209ENST00000558253 NALCNQ8IZF0 1738 aa10.45□□□□□ -0.74
SPG11-209ENST00000558253 RIMS1Q86UR5 1692 aaKnown RBP10.45□□□□□ -0.74
SPG11-209ENST00000558253 SLC26A8Q96RN1 970 aa10.45□□□□□ -0.74
SPG11-209ENST00000558253 KDRP35968 1356 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms