RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 SCARF1Q14162 830 aa11.21□□□□□ -0.61
RTF1-204ENST00000558117 TMPRSS4Q9NRS4 437 aa11.21□□□□□ -0.61
RTF1-204ENST00000558117 CEP126Q9P2H0 1117 aa11.21□□□□□ -0.61
RTF1-204ENST00000558117 HECW2Q9P2P5 1572 aa11.2□□□□□ -0.62
RTF1-204ENST00000558117 SLFNL1Q499Z3 407 aa11.2□□□□□ -0.62
RTF1-204ENST00000558117 SENP2Q9HC62 589 aa11.2□□□□□ -0.62
RTF1-204ENST00000558117 ZNF787Q6DD87 383 aa11.19□□□□□ -0.62
RTF1-204ENST00000558117 MRPL14Q6P1L8 145 aaKnown RBP11.19□□□□□ -0.62
RTF1-204ENST00000558117 MEIOBQ8N635 442 aa11.19□□□□□ -0.62
RTF1-204ENST00000558117 ZNF784Q8NCA9 323 aaPredicted RBP11.19□□□□□ -0.62
RTF1-204ENST00000558117 ADAMTS19Q8TE59 1207 aa11.19□□□□□ -0.62
RTF1-204ENST00000558117 ALG2Q9H553 416 aa11.18□□□□□ -0.62
RTF1-204ENST00000558117 GMPR2Q9P2T1 348 aaKnown RBP11.18□□□□□ -0.62
RTF1-204ENST00000558117 ZNF777Q9ULD5 760 aaPredicted RBP11.18□□□□□ -0.62
RTF1-204ENST00000558117 PCDHB11Q9Y5F2 797 aa11.18□□□□□ -0.62
RTF1-204ENST00000558117 TRIM46Q7Z4K8 759 aa11.17□□□□□ -0.62
RTF1-204ENST00000558117 RNF135Q8IUD6 432 aa11.17□□□□□ -0.62
RTF1-204ENST00000558117 LINC00528Q8N1L1 170 aa11.17□□□□□ -0.62
RTF1-204ENST00000558117 KIFC2Q96AC6 838 aa11.17□□□□□ -0.62
RTF1-204ENST00000558117 ESF1Q9H501 851 aaKnown RBP11.17□□□□□ -0.62
RTF1-204ENST00000558117 CYLDQ9NQC7 956 aa11.17□□□□□ -0.62
RTF1-204ENST00000558117 CBLBQ13191 982 aa11.16□□□□□ -0.62
RTF1-204ENST00000558117 PURBQ96QR8 312 aaKnown RBP11.16□□□□□ -0.62
RTF1-204ENST00000558117 CLASP1Q7Z460 1538 aa11.15□□□□□ -0.62
RTF1-204ENST00000558117 C11orf95C9JLR9 678 aaPredicted RBP11.15□□□□□ -0.62
RTF1-204ENST00000558117 C6orf118Q5T5N4 469 aa11.15□□□□□ -0.62
RTF1-204ENST00000558117 HDGFL1Q5TGJ6 251 aa11.15□□□□□ -0.62
RTF1-204ENST00000558117 Q6ZVU0 165 aa11.15□□□□□ -0.62
RTF1-204ENST00000558117 TSEN34Q9BSV6 310 aaKnown RBP11.15□□□□□ -0.62
RTF1-204ENST00000558117 BMP2P12643 396 aa11.14□□□□□ -0.63
RTF1-204ENST00000558117 EIF4G3O43432 1585 aaKnown RBP11.14□□□□□ -0.63
RTF1-204ENST00000558117 CC2D2BQ6DHV5 1058 aa11.13□□□□□ -0.63
RTF1-204ENST00000558117 ZFP42Q96MM3 310 aa11.13□□□□□ -0.63
RTF1-204ENST00000558117 DOLKQ9UPQ8 538 aa11.13□□□□□ -0.63
RTF1-204ENST00000558117 GAPVD1Q14C86 1478 aa11.12□□□□□ -0.63
RTF1-204ENST00000558117 ADH1AP07327 375 aa11.12□□□□□ -0.63
RTF1-204ENST00000558117 PHTF2Q8N3S3 785 aa11.12□□□□□ -0.63
RTF1-204ENST00000558117 TRIM47Q96LD4 638 aa11.12□□□□□ -0.63
RTF1-204ENST00000558117 CFTRP13569 1480 aa11.12□□□□□ -0.63
RTF1-204ENST00000558117 LILRA1O75019 489 aa11.11□□□□□ -0.63
RTF1-204ENST00000558117 MYCP01106 439 aaPredicted RBP11.11□□□□□ -0.63
RTF1-204ENST00000558117 TSGA10IPQ3SY00 556 aa11.11□□□□□ -0.63
RTF1-204ENST00000558117 GLMNQ92990 594 aa11.11□□□□□ -0.63
RTF1-204ENST00000558117 CCDC85AQ96PX6 553 aaPredicted RBP11.11□□□□□ -0.63
RTF1-204ENST00000558117 DISP3Q9P2K9 1392 aa11.11□□□□□ -0.63
RTF1-204ENST00000558117 SYNJ2O15056 1496 aa11.11□□□□□ -0.63
RTF1-204ENST00000558117 POTECB2RU33 542 aa11.1□□□□□ -0.63
RTF1-204ENST00000558117 PIK3CDO00329 1044 aa11.1□□□□□ -0.63
RTF1-204ENST00000558117 ERVK-9P63128 1117 aa11.1□□□□□ -0.63
RTF1-204ENST00000558117 RELBQ01201 579 aa11.1□□□□□ -0.63
RTF1-204ENST00000558117 ERICH6Q7L0X2 663 aa11.1□□□□□ -0.63
RTF1-204ENST00000558117 AQRO60306 1485 aaKnown RBP eCLIP11.1□□□□□ -0.634e-7■■■□□ 16.1
RTF1-204ENST00000558117 ARID3CA6NKF2 412 aa11.09□□□□□ -0.63
RTF1-204ENST00000558117 OXLD1Q5BKU9 147 aa11.09□□□□□ -0.63
RTF1-204ENST00000558117 CYP2U1Q7Z449 544 aa11.09□□□□□ -0.63
RTF1-204ENST00000558117 AGBL1Q96MI9 1066 aa11.09□□□□□ -0.63
RTF1-204ENST00000558117 ADD1P35611 737 aaKnown RBP11.08□□□□□ -0.64
RTF1-204ENST00000558117 PLPP7Q8NBV4 271 aa11.08□□□□□ -0.64
RTF1-204ENST00000558117 ATP5J2-PTCD1G3V325 749 aa11.07□□□□□ -0.64
RTF1-204ENST00000558117 MAP7D1Q3KQU3 841 aa11.07□□□□□ -0.64
RTF1-204ENST00000558117 SIRT1Q96EB6 747 aa11.07□□□□□ -0.64
RTF1-204ENST00000558117 CALR3Q96L12 384 aaKnown RBP11.07□□□□□ -0.64
RTF1-204ENST00000558117 UCN2Q96RP3 112 aa11.07□□□□□ -0.64
RTF1-204ENST00000558117 SKIP12755 728 aa11.06□□□□□ -0.64
RTF1-204ENST00000558117 SNRPBP14678 240 aaKnown RBP11.06□□□□□ -0.64
RTF1-204ENST00000558117 SCTRP47872 440 aa11.06□□□□□ -0.64
RTF1-204ENST00000558117 USP4Q13107 963 aa11.06□□□□□ -0.64
RTF1-204ENST00000558117 CDCA7Q9BWT1 371 aaPredicted RBP11.06□□□□□ -0.64
RTF1-204ENST00000558117 KIF13AQ9H1H9 1805 aa11.06□□□□□ -0.64
RTF1-204ENST00000558117 SPINT1O43278 529 aa11.05□□□□□ -0.64
RTF1-204ENST00000558117 PTGIRP43119 386 aa11.05□□□□□ -0.64
RTF1-204ENST00000558117 ZNF395Q9H8N7 513 aaPredicted RBP11.05□□□□□ -0.64
RTF1-204ENST00000558117 POLMQ9NP87 494 aaPredicted RBP11.05□□□□□ -0.64
RTF1-204ENST00000558117 ADGRL1O94910 1474 aa11.05□□□□□ -0.64
RTF1-204ENST00000558117 MAN1A2O60476 641 aa11.04□□□□□ -0.64
RTF1-204ENST00000558117 CHIC2Q9UKJ5 165 aa11.04□□□□□ -0.64
RTF1-204ENST00000558117 MROH2BQ7Z745 1585 aa11.03□□□□□ -0.64
RTF1-204ENST00000558117 TBC1D9Q6ZT07 1266 aa11.03□□□□□ -0.64
RTF1-204ENST00000558117 NFATC2IPQ8NCF5 419 aa11.03□□□□□ -0.64
RTF1-204ENST00000558117 OSBPL3Q9H4L5 887 aa11.03□□□□□ -0.64
RTF1-204ENST00000558117 TTLL8A6PVC2 850 aa11.02□□□□□ -0.65
RTF1-204ENST00000558117 SUPT5HO00267 1087 aaKnown RBP11.02□□□□□ -0.65
RTF1-204ENST00000558117 EML3Q32P44 896 aa11.02□□□□□ -0.65
RTF1-204ENST00000558117 INSM2Q96T92 566 aaPredicted RBP11.02□□□□□ -0.65
RTF1-204ENST00000558117 C1orf115Q9H7X2 142 aa11.02□□□□□ -0.65
RTF1-204ENST00000558117 SOS2Q07890 1332 aaPredicted RBP11.02□□□□□ -0.65
RTF1-204ENST00000558117 MEN1O00255 615 aa11□□□□□ -0.65
RTF1-204ENST00000558117 NLRP3Q96P20 1036 aa11□□□□□ -0.65
RTF1-204ENST00000558117 SYNJ1O43426 1573 aa10.99□□□□□ -0.65
RTF1-204ENST00000558117 USP17L5A8MUK1 530 aa10.99□□□□□ -0.65
RTF1-204ENST00000558117 LZTS3O60299 673 aaPredicted RBP10.99□□□□□ -0.65
RTF1-204ENST00000558117 ARHGEF10LQ9HCE6 1279 aa10.99□□□□□ -0.65
RTF1-204ENST00000558117 TFIP11Q9UBB9 837 aaKnown RBP10.99□□□□□ -0.65
RTF1-204ENST00000558117 KDM6BO15054 1643 aa10.98□□□□□ -0.65
RTF1-204ENST00000558117 SOBPA7XYQ1 873 aa10.98□□□□□ -0.65
RTF1-204ENST00000558117 GNRH1P01148 92 aa10.98□□□□□ -0.65
RTF1-204ENST00000558117 CTSOP43234 321 aaPredicted RBP10.98□□□□□ -0.65
RTF1-204ENST00000558117 FAM69CQ0P6D2 419 aa10.98□□□□□ -0.65
RTF1-204ENST00000558117 KDF1Q8NAX2 398 aaPredicted RBP10.98□□□□□ -0.65
RTF1-204ENST00000558117 TOPBP1Q92547 1522 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms