RNA–Protein interactions for RNA: ENST00000556737.1

SHMT2-224, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-224ENST00000556737 PLSCR1O15162 318 aa14.25□□□□□ -0.13
SHMT2-224ENST00000556737 USHBP1Q8N6Y0 703 aa14.25□□□□□ -0.13
SHMT2-224ENST00000556737 KCNQ2O43526 872 aa14.24□□□□□ -0.13
SHMT2-224ENST00000556737 R3HDM1Q15032 1099 aaKnown RBP14.24□□□□□ -0.13
SHMT2-224ENST00000556737 POLKQ9UBT6 870 aa14.24□□□□□ -0.13
SHMT2-224ENST00000556737 WASHC2AQ641Q2 1341 aa14.23□□□□□ -0.13
SHMT2-224ENST00000556737 LY75O60449 1722 aa14.22□□□□□ -0.13
SHMT2-224ENST00000556737 ACSBG1Q96GR2 724 aa14.22□□□□□ -0.13
SHMT2-224ENST00000556737 ANO8Q9HCE9 1232 aaPredicted RBP14.22□□□□□ -0.13
SHMT2-224ENST00000556737 PROM2Q8N271 834 aa14.21□□□□□ -0.13
SHMT2-224ENST00000556737 TNNT2P45379 298 aaPredicted RBP14.2□□□□□ -0.14
SHMT2-224ENST00000556737 ZCRB1Q8TBF4 217 aaKnown RBP14.2□□□□□ -0.14
SHMT2-224ENST00000556737 DDX54Q8TDD1 881 aaKnown RBP14.2□□□□□ -0.14
SHMT2-224ENST00000556737 PPM1GO15355 546 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-224ENST00000556737 ZEB1P37275 1124 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-224ENST00000556737 AMER1Q5JTC6 1135 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-224ENST00000556737 TATP17735 454 aaPredicted RBP14.18□□□□□ -0.14
SHMT2-224ENST00000556737 RAPGEF4Q8WZA2 1011 aa14.18□□□□□ -0.14
SHMT2-224ENST00000556737 ITGB4P16144 1822 aa14.18□□□□□ -0.14
SHMT2-224ENST00000556737 TUBGCP6Q96RT7 1819 aa14.18□□□□□ -0.14
SHMT2-224ENST00000556737 PCDH11XQ9BZA7 1347 aa14.17□□□□□ -0.14
SHMT2-224ENST00000556737 PCDH11YQ9BZA8 1340 aa14.17□□□□□ -0.14
SHMT2-224ENST00000556737 EIF4A2Q14240 407 aaKnown RBP14.17□□□□□ -0.14
SHMT2-224ENST00000556737 TXNRD1Q16881 649 aa14.17□□□□□ -0.14
SHMT2-224ENST00000556737 EYA1Q99502 592 aa14.17□□□□□ -0.14
SHMT2-224ENST00000556737 QSER1Q2KHR3 1735 aa14.17□□□□□ -0.14
SHMT2-224ENST00000556737 IGSF1Q8N6C5 1336 aa14.16□□□□□ -0.14
SHMT2-224ENST00000556737 PER1O15534 1290 aaPredicted RBP14.16□□□□□ -0.14
SHMT2-224ENST00000556737 NBPF14Q5TI25 921 aa14.16□□□□□ -0.14
SHMT2-224ENST00000556737 KNSTRNQ9Y448 316 aa14.16□□□□□ -0.14
SHMT2-224ENST00000556737 PLEKHG2Q9H7P9 1386 aa14.16□□□□□ -0.14
SHMT2-224ENST00000556737 CYP27B1O15528 508 aa14.15□□□□□ -0.14
SHMT2-224ENST00000556737 MORC1Q86VD1 984 aa14.15□□□□□ -0.14
SHMT2-224ENST00000556737 PRIM1P49642 420 aaKnown RBP14.14□□□□□ -0.15
SHMT2-224ENST00000556737 KAT6BQ8WYB5 2073 aa14.13□□□□□ -0.15
SHMT2-224ENST00000556737 NPC1L1Q9UHC9 1359 aa14.13□□□□□ -0.15
SHMT2-224ENST00000556737 LRRC4BQ9NT99 713 aa14.13□□□□□ -0.15
SHMT2-224ENST00000556737 C5P01031 1676 aa14.13□□□□□ -0.15
SHMT2-224ENST00000556737 COL3A1P02461 1466 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-224ENST00000556737 TAF1LQ8IZX4 1826 aa14.11□□□□□ -0.15
SHMT2-224ENST00000556737 SYTL4Q96C24 671 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-224ENST00000556737 PDGFDQ9GZP0 370 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-224ENST00000556737 KDRP35968 1356 aa14.1□□□□□ -0.15
SHMT2-224ENST00000556737 COL24A1Q17RW2 1714 aa14.1□□□□□ -0.15
SHMT2-224ENST00000556737 SLC15A2Q16348 729 aa14.1□□□□□ -0.15
SHMT2-224ENST00000556737 ZNF827Q17R98 1081 aa14.1□□□□□ -0.15
SHMT2-224ENST00000556737 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.1□□□□□ -0.15
SHMT2-224ENST00000556737 NKX1-1Q15270 411 aaPredicted RBP14.09□□□□□ -0.15
SHMT2-224ENST00000556737 SLC27A3Q5K4L6 730 aa14.09□□□□□ -0.15
SHMT2-224ENST00000556737 STK32BQ9NY57 414 aa14.09□□□□□ -0.15
SHMT2-224ENST00000556737 PHKG2P15735 406 aa14.08□□□□□ -0.16
SHMT2-224ENST00000556737 IL13P35225 146 aa14.08□□□□□ -0.16
SHMT2-224ENST00000556737 AEBP1Q8IUX7 1158 aa14.08□□□□□ -0.16
SHMT2-224ENST00000556737 AKT1S1Q96B36 256 aa14.08□□□□□ -0.16
SHMT2-224ENST00000556737 SPG7Q9UQ90 795 aa14.08□□□□□ -0.16
SHMT2-224ENST00000556737 KDM6AO15550 1401 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-224ENST00000556737 KCNQ4P56696 695 aa14.07□□□□□ -0.16
SHMT2-224ENST00000556737 CC2D1BQ5T0F9 858 aaKnown RBP14.07□□□□□ -0.16
SHMT2-224ENST00000556737 PALLDQ8WX93 1383 aa14.07□□□□□ -0.16
SHMT2-224ENST00000556737 MTHFSP49914 203 aa14.06□□□□□ -0.16
SHMT2-224ENST00000556737 SPON1Q9HCB6 807 aa14.06□□□□□ -0.16
SHMT2-224ENST00000556737 C4BP0C0L5 1744 aa14.06□□□□□ -0.16
SHMT2-224ENST00000556737 ADAMTS7Q9UKP4 1686 aa14.05□□□□□ -0.16
SHMT2-224ENST00000556737 ZNF831Q5JPB2 1677 aa14.04□□□□□ -0.16
SHMT2-224ENST00000556737 SCN11AQ9UI33 1791 aa14.04□□□□□ -0.16
SHMT2-224ENST00000556737 VIRMAQ69YN4 1812 aaKnown RBP14.04□□□□□ -0.16
SHMT2-224ENST00000556737 ZBTB7AO95365 584 aa14.04□□□□□ -0.16
SHMT2-224ENST00000556737 MPRIPQ6WCQ1 1025 aa14.04□□□□□ -0.16
SHMT2-224ENST00000556737 IFNL2Q8IZJ0 200 aa14.04□□□□□ -0.16
SHMT2-224ENST00000556737 PIGBQ92521 554 aa14.04□□□□□ -0.16
SHMT2-224ENST00000556737 CCNL1Q9UK58 526 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-224ENST00000556737 PNPLA7Q6ZV29 1317 aa14.04□□□□□ -0.16
SHMT2-224ENST00000556737 PTGER2P43116 358 aa14.03□□□□□ -0.16
SHMT2-224ENST00000556737 SULT6B1Q6IMI4 303 aa14.03□□□□□ -0.16
SHMT2-224ENST00000556737 SGIP1Q9BQI5 828 aa14.03□□□□□ -0.16
SHMT2-224ENST00000556737 CICQ96RK0 1608 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-224ENST00000556737 UBR3Q6ZT12 1888 aa14.03□□□□□ -0.16
SHMT2-224ENST00000556737 COL5A3P25940 1745 aaPredicted RBP14.02□□□□□ -0.16
SHMT2-224ENST00000556737 MRC1P22897 1456 aa14.02□□□□□ -0.16
SHMT2-224ENST00000556737 ZNF530Q6P9A1 599 aaPredicted RBP14.01□□□□□ -0.17
SHMT2-224ENST00000556737 MTFR1LQ9H019 292 aa14.01□□□□□ -0.17
SHMT2-224ENST00000556737 AMOTQ4VCS5 1084 aa14□□□□□ -0.17
SHMT2-224ENST00000556737 PLEKHO1Q53GL0 409 aaPredicted RBP14□□□□□ -0.17
SHMT2-224ENST00000556737 TMOD3Q9NYL9 352 aa14□□□□□ -0.17
SHMT2-224ENST00000556737 TJP1Q07157 1748 aa13.99□□□□□ -0.17
SHMT2-224ENST00000556737 CNGB1Q14028 1251 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-224ENST00000556737 SMARCC1Q92922 1105 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-224ENST00000556737 DCAF5Q96JK2 942 aa13.99□□□□□ -0.17
SHMT2-224ENST00000556737 ATF5Q9Y2D1 282 aaPredicted RBP13.99□□□□□ -0.17
SHMT2-224ENST00000556737 DIAPH1O60610 1272 aaKnown RBP13.98□□□□□ -0.17
SHMT2-224ENST00000556737 ASAP1Q9ULH1 1129 aa13.98□□□□□ -0.17
SHMT2-224ENST00000556737 ERVV-2B6SEH9 535 aa13.97□□□□□ -0.17
SHMT2-224ENST00000556737 HSP90AB1P08238 724 aaKnown RBP13.97□□□□□ -0.17
SHMT2-224ENST00000556737 HMOX1P09601 288 aa13.97□□□□□ -0.17
SHMT2-224ENST00000556737 ATG3Q9NT62 314 aa13.97□□□□□ -0.17
SHMT2-224ENST00000556737 TFCP2L1Q9NZI6 479 aa13.97□□□□□ -0.17
SHMT2-224ENST00000556737 LOC102724428A0A0B4J2F2 783 aa13.96□□□□□ -0.17
SHMT2-224ENST00000556737 SIK1P57059 783 aa13.96□□□□□ -0.17
SHMT2-224ENST00000556737 AMIGO3Q86WK7 504 aa13.96□□□□□ -0.17
SHMT2-224ENST00000556737 PPP1R1BQ9UD71 204 aaPredicted RBP13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 145.6 ms