RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 GCP02774 474 aa33.69■■■□□ 2.98
CCDC88C-205ENST00000553403 CRB1P82279 1406 aa33.69■■■□□ 2.98
CCDC88C-205ENST00000553403 TWISTNBQ3B726 338 aaPredicted RBP33.68■■■□□ 2.98
CCDC88C-205ENST00000553403 MCM10Q7L590 875 aa33.68■■■□□ 2.98
CCDC88C-205ENST00000553403 TSPYL6Q8N831 410 aa33.68■■■□□ 2.98
CCDC88C-205ENST00000553403 RTF1Q92541 710 aaKnown RBP33.68■■■□□ 2.98
CCDC88C-205ENST00000553403 LTV1Q96GA3 475 aaPredicted RBP33.67■■■□□ 2.98
CCDC88C-205ENST00000553403 MSH6P52701 1360 aa33.66■■■□□ 2.98
CCDC88C-205ENST00000553403 ARHGEF25Q86VW2 580 aa33.66■■■□□ 2.98
CCDC88C-205ENST00000553403 MRPL50Q8N5N7 158 aaKnown RBP33.66■■■□□ 2.98
CCDC88C-205ENST00000553403 ALS2Q96Q42 1657 aa33.66■■■□□ 2.98
CCDC88C-205ENST00000553403 HAP1P54257 671 aaPredicted RBP33.65■■■□□ 2.98
CCDC88C-205ENST00000553403 C8orf58Q8NAV2 365 aa33.64■■■□□ 2.98
CCDC88C-205ENST00000553403 ARHGAP45Q92619 1136 aa33.64■■■□□ 2.98
CCDC88C-205ENST00000553403 KIAA0232Q92628 1395 aa33.64■■■□□ 2.98
CCDC88C-205ENST00000553403 DDX19BQ9UMR2 479 aa33.62■■■□□ 2.97
CCDC88C-205ENST00000553403 IGHDP01880 384 aa33.61■■■□□ 2.97
CCDC88C-205ENST00000553403 LMOD2Q6P5Q4 547 aa33.61■■■□□ 2.97
CCDC88C-205ENST00000553403 LRRC37A3O60309 1634 aa33.59■■■□□ 2.97
CCDC88C-205ENST00000553403 NPHP3Q7Z494 1330 aa33.58■■■□□ 2.97
CCDC88C-205ENST00000553403 GNAT3A8MTJ3 354 aa33.58■■■□□ 2.97
CCDC88C-205ENST00000553403 ELL2O00472 640 aaPredicted RBP33.57■■■□□ 2.96
CCDC88C-205ENST00000553403 PCDHB15Q9Y5E8 787 aa33.57■■■□□ 2.96
CCDC88C-205ENST00000553403 MAP3K5Q99683 1374 aa33.56■■■□□ 2.96
CCDC88C-205ENST00000553403 NBPF6Q5VWK0 638 aa33.56■■■□□ 2.96
CCDC88C-205ENST00000553403 NBPF4Q96M43 638 aa33.56■■■□□ 2.96
CCDC88C-205ENST00000553403 NCAPD2Q15021 1401 aa33.56■■■□□ 2.96
CCDC88C-205ENST00000553403 ITPRIPQ8IWB1 547 aa33.55■■■□□ 2.96
CCDC88C-205ENST00000553403 TMEM57Q8N5G2 664 aa33.55■■■□□ 2.96
CCDC88C-205ENST00000553403 ZBTB7CA1YPR0 619 aa33.55■■■□□ 2.96
CCDC88C-205ENST00000553403 MED1Q15648 1581 aaPredicted RBP33.53■■■□□ 2.96
CCDC88C-205ENST00000553403 USHBP1Q8N6Y0 703 aa33.53■■■□□ 2.96
CCDC88C-205ENST00000553403 RWDD1Q9H446 243 aaPredicted RBP33.52■■■□□ 2.96
CCDC88C-205ENST00000553403 BABAM1Q9NWV8 329 aa33.51■■■□□ 2.95
CCDC88C-205ENST00000553403 TNS3Q68CZ2 1445 aa33.5■■■□□ 2.95
CCDC88C-205ENST00000553403 SLAIN2Q9P270 581 aa33.5■■■□□ 2.95
CCDC88C-205ENST00000553403 TSPYL4Q9UJ04 414 aa33.5■■■□□ 2.95
CCDC88C-205ENST00000553403 CAMTA1Q9Y6Y1 1673 aa33.5■■■□□ 2.95
CCDC88C-205ENST00000553403 API5Q9BZZ5 524 aaKnown RBP33.49■■■□□ 2.95
CCDC88C-205ENST00000553403 CHMP4BQ9H444 224 aaKnown RBP33.49■■■□□ 2.95
CCDC88C-205ENST00000553403 PXDNQ92626 1479 aa33.49■■■□□ 2.95
CCDC88C-205ENST00000553403 PDE4AP27815 886 aa33.48■■■□□ 2.95
CCDC88C-205ENST00000553403 SKAP1Q86WV1 359 aa33.48■■■□□ 2.95
CCDC88C-205ENST00000553403 ANKRD24Q8TF21 1146 aa33.48■■■□□ 2.95
CCDC88C-205ENST00000553403 ABCC4O15439 1325 aa33.47■■■□□ 2.95
CCDC88C-205ENST00000553403 RGPD2P0DJD1 1756 aa33.47■■■□□ 2.95
CCDC88C-205ENST00000553403 ZBTB40Q9NUA8 1239 aa33.47■■■□□ 2.95
CCDC88C-205ENST00000553403 BACH2Q9BYV9 841 aa33.46■■■□□ 2.95
CCDC88C-205ENST00000553403 IL17REQ8NFR9 667 aa33.45■■■□□ 2.95
CCDC88C-205ENST00000553403 DDX17Q92841 729 aaKnown RBP33.45■■■□□ 2.95
CCDC88C-205ENST00000553403 LRRC59Q96AG4 307 aaKnown RBP33.45■■■□□ 2.94
CCDC88C-205ENST00000553403 KRT24Q2M2I5 525 aa33.44■■■□□ 2.94
CCDC88C-205ENST00000553403 ROBO1Q9Y6N7 1651 aa33.44■■■□□ 2.94
CCDC88C-205ENST00000553403 SPATA31A3Q5VYP0 1347 aa33.44■■■□□ 2.94
CCDC88C-205ENST00000553403 HDAC1Q13547 482 aaPredicted RBP33.43■■■□□ 2.94
CCDC88C-205ENST00000553403 AMOTQ4VCS5 1084 aa33.42■■■□□ 2.94
CCDC88C-205ENST00000553403 PLEKHO1Q53GL0 409 aaPredicted RBP33.42■■■□□ 2.94
CCDC88C-205ENST00000553403 SOS1Q07889 1333 aaPredicted RBP33.42■■■□□ 2.94
CCDC88C-205ENST00000553403 ABCC6O95255 1503 aa33.42■■■□□ 2.94
CCDC88C-205ENST00000553403 TAF7Q15545 349 aaPredicted RBP33.42■■■□□ 2.94
CCDC88C-205ENST00000553403 MIS18AQ9NYP9 233 aa33.42■■■□□ 2.94
CCDC88C-205ENST00000553403 AXIN2Q9Y2T1 843 aa33.42■■■□□ 2.94
CCDC88C-205ENST00000553403 PLEKHG5O94827 1062 aa33.41■■■□□ 2.94
CCDC88C-205ENST00000553403 BRINP3Q76B58 766 aa33.41■■■□□ 2.94
CCDC88C-205ENST00000553403 CEMIPQ8WUJ3 1361 aa33.41■■■□□ 2.94
CCDC88C-205ENST00000553403 LMO7Q8WWI1 1683 aa33.39■■■□□ 2.94
CCDC88C-205ENST00000553403 ZC3H6P61129 1189 aaKnown RBP33.39■■■□□ 2.94
CCDC88C-205ENST00000553403 AKAP4Q5JQC9 854 aa33.38■■■□□ 2.93
CCDC88C-205ENST00000553403 ILDR2Q71H61 639 aa33.38■■■□□ 2.93
CCDC88C-205ENST00000553403 PTPRCP08575 1304 aa33.37■■■□□ 2.93
CCDC88C-205ENST00000553403 ERBB3P21860 1342 aa33.37■■■□□ 2.93
CCDC88C-205ENST00000553403 ZBTB7BO15156 539 aaPredicted RBP33.37■■■□□ 2.93
CCDC88C-205ENST00000553403 CRYBG1Q9Y4K1 1723 aa33.37■■■□□ 2.93
CCDC88C-205ENST00000553403 RGS3P49796 1198 aa33.36■■■□□ 2.93
CCDC88C-205ENST00000553403 COL18A1P39060 1754 aa33.36■■■□□ 2.93
CCDC88C-205ENST00000553403 RGPD5Q99666 1765 aa33.35■■■□□ 2.93
CCDC88C-205ENST00000553403 ZNF530Q6P9A1 599 aaPredicted RBP33.33■■■□□ 2.93
CCDC88C-205ENST00000553403 CPDO75976 1380 aa33.32■■■□□ 2.92
CCDC88C-205ENST00000553403 OVOS2A0A0G2JMS6 1433 aa33.32■■■□□ 2.92
CCDC88C-205ENST00000553403 PDZRN3Q9UPQ7 1066 aa33.32■■■□□ 2.92
CCDC88C-205ENST00000553403 RGS12O14924 1447 aa33.31■■■□□ 2.92
CCDC88C-205ENST00000553403 FAM161AQ3B820 660 aa33.31■■■□□ 2.92
CCDC88C-205ENST00000553403 INTS3Q68E01 1043 aaKnown RBP33.31■■■□□ 2.92
CCDC88C-205ENST00000553403 SOS2Q07890 1332 aaPredicted RBP33.3■■■□□ 2.92
CCDC88C-205ENST00000553403 FAM208AQ9UK61 1670 aaKnown RBP33.28■■■□□ 2.92
CCDC88C-205ENST00000553403 PLEKHG2Q9H7P9 1386 aa33.28■■■□□ 2.92
CCDC88C-205ENST00000553403 SLC4A2P04920 1241 aa33.28■■■□□ 2.92
CCDC88C-205ENST00000553403 C1orf141Q5JVX7 400 aa33.28■■■□□ 2.92
CCDC88C-205ENST00000553403 SMC5Q8IY18 1101 aa33.27■■■□□ 2.92
CCDC88C-205ENST00000553403 CCDC30Q5VVM6 783 aa33.26■■■□□ 2.92
CCDC88C-205ENST00000553403 CABLES1Q8TDN4 633 aa33.26■■■□□ 2.92
CCDC88C-205ENST00000553403 PHLPP1O60346 1717 aa33.26■■■□□ 2.92
CCDC88C-205ENST00000553403 LGR6Q9HBX8 967 aa33.26■■■□□ 2.91
CCDC88C-205ENST00000553403 ANP32AP39687 249 aaKnown RBP33.25■■■□□ 2.91
CCDC88C-205ENST00000553403 STK31Q9BXU1 1019 aa33.25■■■□□ 2.91
CCDC88C-205ENST00000553403 RNMTO43148 476 aaKnown RBP33.23■■■□□ 2.91
CCDC88C-205ENST00000553403 KDM3BQ7LBC6 1761 aa33.23■■■□□ 2.91
CCDC88C-205ENST00000553403 C8orf34Q49A92 452 aa33.23■■■□□ 2.91
CCDC88C-205ENST00000553403 TEFQ10587 303 aa33.22■■■□□ 2.91
CCDC88C-205ENST00000553403 NLRP2Q9NX02 1062 aa33.22■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms