RNA–Protein interactions for RNA: ENST00000552839.6

TMEM116-218, Transcript of transmembrane protein 116, humanhuman

TSL 4

Gene TMEM116, Length 511 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM116-218ENST00000552839 SHANK3Q9BYB0 1731 aa15.79■□□□□ 0.12
TMEM116-218ENST00000552839 NLGN2Q8NFZ4 835 aa15.78■□□□□ 0.12
TMEM116-218ENST00000552839 DOT1LQ8TEK3 1739 aa15.77■□□□□ 0.12
TMEM116-218ENST00000552839 FAM208AQ9UK61 1670 aaKnown RBP15.77■□□□□ 0.12
TMEM116-218ENST00000552839 TMF1P82094 1093 aa15.77■□□□□ 0.12
TMEM116-218ENST00000552839 POLR3GLQ9BT43 218 aa15.77■□□□□ 0.12
TMEM116-218ENST00000552839 TFCP2L1Q9NZI6 479 aa15.77■□□□□ 0.12
TMEM116-218ENST00000552839 RGPD2P0DJD1 1756 aa15.77■□□□□ 0.11
TMEM116-218ENST00000552839 SLC12A5Q9H2X9 1139 aa15.76■□□□□ 0.11
TMEM116-218ENST00000552839 PRIM1P49642 420 aaKnown RBP15.75■□□□□ 0.11
TMEM116-218ENST00000552839 CDCA8Q53HL2 280 aa15.75■□□□□ 0.11
TMEM116-218ENST00000552839 HDGFL2Q7Z4V5 671 aaPredicted RBP15.75■□□□□ 0.11
TMEM116-218ENST00000552839 TMC1Q8TDI8 760 aa15.75■□□□□ 0.11
TMEM116-218ENST00000552839 IP6K1Q92551 441 aa15.75■□□□□ 0.11
TMEM116-218ENST00000552839 SYTL4Q96C24 671 aaPredicted RBP15.75■□□□□ 0.11
TMEM116-218ENST00000552839 EDC4Q6P2E9 1401 aaKnown RBP15.75■□□□□ 0.11
TMEM116-218ENST00000552839 YBX3P16989 372 aaKnown RBP eCLIP15.74■□□□□ 0.116e-6■□□□□ 10.9
TMEM116-218ENST00000552839 LTV1Q96GA3 475 aaPredicted RBP15.74■□□□□ 0.11
TMEM116-218ENST00000552839 NSD2O96028 1365 aa15.74■□□□□ 0.11
TMEM116-218ENST00000552839 ANKRD36BQ8N2N9 1353 aa15.74■□□□□ 0.11
TMEM116-218ENST00000552839 IFFO2Q5TF58 517 aa15.73■□□□□ 0.11
TMEM116-218ENST00000552839 A0A1W2PP64 1363 aa15.72■□□□□ 0.11
TMEM116-218ENST00000552839 GRIN3BO60391 1043 aa15.7■□□□□ 0.1
TMEM116-218ENST00000552839 COL23A1Q86Y22 540 aaPredicted RBP15.7■□□□□ 0.1
TMEM116-218ENST00000552839 TERF2IPQ9NYB0 399 aa15.7■□□□□ 0.1
TMEM116-218ENST00000552839 CCNL1Q9UK58 526 aaPredicted RBP15.7■□□□□ 0.1
TMEM116-218ENST00000552839 MSH5O43196 834 aa15.69■□□□□ 0.1
TMEM116-218ENST00000552839 FBLN1P23142 703 aa15.69■□□□□ 0.1
TMEM116-218ENST00000552839 ZCRB1Q8TBF4 217 aaKnown RBP15.69■□□□□ 0.1
TMEM116-218ENST00000552839 MAP3K19Q56UN5 1328 aa15.68■□□□□ 0.1
TMEM116-218ENST00000552839 HOXC9P31274 260 aa15.68■□□□□ 0.1
TMEM116-218ENST00000552839 MSL1Q68DK7 614 aa15.68■□□□□ 0.1
TMEM116-218ENST00000552839 TESK2Q96S53 571 aa15.68■□□□□ 0.1
TMEM116-218ENST00000552839 GOLGB1Q14789 3259 aaKnown RBP15.68■□□□□ 0.1
TMEM116-218ENST00000552839 MEGF6O75095 1541 aa15.68■□□□□ 0.1
TMEM116-218ENST00000552839 TAF1LQ8IZX4 1826 aa15.67■□□□□ 0.1
TMEM116-218ENST00000552839 C5P01031 1676 aa15.67■□□□□ 0.1
TMEM116-218ENST00000552839 AMPHP49418 695 aa15.66■□□□□ 0.1
TMEM116-218ENST00000552839 ATP10DQ9P241 1426 aa15.66■□□□□ 0.1
TMEM116-218ENST00000552839 PUS7Q96PZ0 661 aaKnown RBP15.65■□□□□ 0.1
TMEM116-218ENST00000552839 COG3Q96JB2 828 aa15.64■□□□□ 0.09
TMEM116-218ENST00000552839 NBPF6Q5VWK0 638 aa15.63■□□□□ 0.09
TMEM116-218ENST00000552839 NBPF4Q96M43 638 aa15.63■□□□□ 0.09
TMEM116-218ENST00000552839 CD2APQ9Y5K6 639 aa15.62■□□□□ 0.09
TMEM116-218ENST00000552839 ITGB4P16144 1822 aa15.61■□□□□ 0.09
TMEM116-218ENST00000552839 RRS1Q15050 365 aaKnown RBP15.61■□□□□ 0.09
TMEM116-218ENST00000552839 USHBP1Q8N6Y0 703 aa15.61■□□□□ 0.09
TMEM116-218ENST00000552839 GPBP1L1Q9HC44 474 aaPredicted RBP15.61■□□□□ 0.09
TMEM116-218ENST00000552839 ADCY9O60503 1353 aa15.61■□□□□ 0.09
TMEM116-218ENST00000552839 CGNL1Q0VF96 1302 aa15.6■□□□□ 0.09
TMEM116-218ENST00000552839 KIF7Q2M1P5 1343 aa15.6■□□□□ 0.09
TMEM116-218ENST00000552839 RTL1A6NKG5 1358 aa15.6■□□□□ 0.09
TMEM116-218ENST00000552839 UBR3Q6ZT12 1888 aa15.59■□□□□ 0.09
TMEM116-218ENST00000552839 FLAD1Q8NFF5 587 aa15.59■□□□□ 0.09
TMEM116-218ENST00000552839 RAPGEF4Q8WZA2 1011 aa15.59■□□□□ 0.09
TMEM116-218ENST00000552839 C4BP0C0L5 1744 aa15.59■□□□□ 0.09
TMEM116-218ENST00000552839 TOGARAM1Q9Y4F4 1720 aa15.59■□□□□ 0.09
TMEM116-218ENST00000552839 PALLDQ8WX93 1383 aa15.59■□□□□ 0.09
TMEM116-218ENST00000552839 HSPA6P17066 643 aa15.58■□□□□ 0.08
TMEM116-218ENST00000552839 TATP17735 454 aaPredicted RBP15.58■□□□□ 0.08
TMEM116-218ENST00000552839 ZNF526Q8TF50 670 aaPredicted RBP15.58■□□□□ 0.08
TMEM116-218ENST00000552839 ZNF316A6NFI3 1004 aaPredicted RBP15.57■□□□□ 0.08
TMEM116-218ENST00000552839 AMIGO3Q86WK7 504 aa15.57■□□□□ 0.08
TMEM116-218ENST00000552839 CEP350Q5VT06 3117 aa15.57■□□□□ 0.08
TMEM116-218ENST00000552839 FYB1O15117 783 aa15.56■□□□□ 0.08
TMEM116-218ENST00000552839 MPRIPQ6WCQ1 1025 aa15.56■□□□□ 0.08
TMEM116-218ENST00000552839 SMIM5Q71RC9 77 aa15.56■□□□□ 0.08
TMEM116-218ENST00000552839 WWC3Q9ULE0 1092 aa15.56■□□□□ 0.08
TMEM116-218ENST00000552839 PCDH11XQ9BZA7 1347 aa15.56■□□□□ 0.08
TMEM116-218ENST00000552839 PCDH11YQ9BZA8 1340 aa15.56■□□□□ 0.08
TMEM116-218ENST00000552839 SMG6Q86US8 1419 aaKnown RBP15.55■□□□□ 0.08
TMEM116-218ENST00000552839 IGSF1Q8N6C5 1336 aa15.55■□□□□ 0.08
TMEM116-218ENST00000552839 CYP27B1O15528 508 aa15.55■□□□□ 0.08
TMEM116-218ENST00000552839 HMGB2P26583 209 aaKnown RBP15.55■□□□□ 0.08
TMEM116-218ENST00000552839 GGNBP2Q9H3C7 697 aa15.55■□□□□ 0.08
TMEM116-218ENST00000552839 MAP2P11137 1827 aaKnown RBP15.54■□□□□ 0.08
TMEM116-218ENST00000552839 WASHC2AQ641Q2 1341 aa15.54■□□□□ 0.08
TMEM116-218ENST00000552839 HSP90AB2PQ58FF8 381 aa15.54■□□□□ 0.08
TMEM116-218ENST00000552839 AK7Q96M32 723 aa15.54■□□□□ 0.08
TMEM116-218ENST00000552839 INSRP06213 1382 aa15.53■□□□□ 0.08
TMEM116-218ENST00000552839 PHF14O94880 888 aa15.53■□□□□ 0.08
TMEM116-218ENST00000552839 PKD1L3Q7Z443 1732 aa15.53■□□□□ 0.08
TMEM116-218ENST00000552839 KIF20BQ96Q89 1820 aa15.52■□□□□ 0.08
TMEM116-218ENST00000552839 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.52■□□□□ 0.08
TMEM116-218ENST00000552839 SMARCC1Q92922 1105 aaPredicted RBP15.52■□□□□ 0.08
TMEM116-218ENST00000552839 KIF3CO14782 793 aa15.51■□□□□ 0.07
TMEM116-218ENST00000552839 PIGBQ92521 554 aa15.51■□□□□ 0.07
TMEM116-218ENST00000552839 SSFA2P28290 1259 aa15.5■□□□□ 0.07
TMEM116-218ENST00000552839 NSD3Q9BZ95 1437 aa15.5■□□□□ 0.07
TMEM116-218ENST00000552839 FLT4P35916 1363 aa15.49■□□□□ 0.07
TMEM116-218ENST00000552839 LINC00116Q8NCU8 138 aa15.49■□□□□ 0.07
TMEM116-218ENST00000552839 KIF13BQ9NQT8 1826 aa15.49■□□□□ 0.07
TMEM116-218ENST00000552839 N4BP2Q86UW6 1770 aaPredicted RBP15.49■□□□□ 0.07
TMEM116-218ENST00000552839 CICQ96RK0 1608 aaPredicted RBP15.48■□□□□ 0.07
TMEM116-218ENST00000552839 LOC102724428A0A0B4J2F2 783 aa15.48■□□□□ 0.07
TMEM116-218ENST00000552839 SIK1P57059 783 aa15.48■□□□□ 0.07
TMEM116-218ENST00000552839 PANK3Q9H999 370 aa15.48■□□□□ 0.07
TMEM116-218ENST00000552839 KNSTRNQ9Y448 316 aa15.48■□□□□ 0.07
TMEM116-218ENST00000552839 KIAA1551Q9HCM1 1747 aa15.48■□□□□ 0.07
TMEM116-218ENST00000552839 KIF24Q5T7B8 1368 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms