RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 NBPF4Q96M43 638 aa6.96□□□□□ -1.29
LIMA1-215ENST00000552823 KIAA1210Q9ULL0 1709 aa6.96□□□□□ -1.29
LIMA1-215ENST00000552823 PLEKHG3A1L390 1219 aa6.96□□□□□ -1.3
LIMA1-215ENST00000552823 HOXC9P31274 260 aa6.96□□□□□ -1.3
LIMA1-215ENST00000552823 OS9Q13438 667 aaPredicted RBP6.96□□□□□ -1.3
LIMA1-215ENST00000552823 HDGFL1Q5TGJ6 251 aa6.96□□□□□ -1.3
LIMA1-215ENST00000552823 SMC5Q8IY18 1101 aa6.96□□□□□ -1.3
LIMA1-215ENST00000552823 IL17REQ8NFR9 667 aa6.96□□□□□ -1.3
LIMA1-215ENST00000552823 TBX22Q9Y458 520 aa6.96□□□□□ -1.3
LIMA1-215ENST00000552823 IL16Q14005 1332 aa6.96□□□□□ -1.3
LIMA1-215ENST00000552823 ZC3H13Q5T200 1668 aaKnown RBP6.96□□□□□ -1.3
LIMA1-215ENST00000552823 PRAMEF22A3QJZ6 481 aa6.96□□□□□ -1.3
LIMA1-215ENST00000552823 CT47B1P0C2W7 299 aaPredicted RBP6.96□□□□□ -1.3
LIMA1-215ENST00000552823 KAT6BQ8WYB5 2073 aa6.96□□□□□ -1.3
LIMA1-215ENST00000552823 GNAT3A8MTJ3 354 aa6.95□□□□□ -1.3
LIMA1-215ENST00000552823 CHL1O00533 1208 aa6.95□□□□□ -1.3
LIMA1-215ENST00000552823 NCLP19338 710 aaKnown RBP6.95□□□□□ -1.3
LIMA1-215ENST00000552823 NUCB1Q02818 461 aa6.95□□□□□ -1.3
LIMA1-215ENST00000552823 HDAC1Q13547 482 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-215ENST00000552823 NUTM1Q86Y26 1132 aa6.95□□□□□ -1.3
LIMA1-215ENST00000552823 DDX54Q8TDD1 881 aaKnown RBP6.95□□□□□ -1.3
LIMA1-215ENST00000552823 TBC1D32Q96NH3 1257 aa6.95□□□□□ -1.3
LIMA1-215ENST00000552823 LARP6Q9BRS8 491 aaKnown RBP6.95□□□□□ -1.3
LIMA1-215ENST00000552823 ZNF853P0CG23 659 aa6.95□□□□□ -1.3
LIMA1-215ENST00000552823 IQSEC2Q5JU85 1478 aa6.95□□□□□ -1.3
LIMA1-215ENST00000552823 TBC1D9Q6ZT07 1266 aa6.95□□□□□ -1.3
LIMA1-215ENST00000552823 ADAMTS13Q76LX8 1427 aa6.95□□□□□ -1.3
LIMA1-215ENST00000552823 PNPLA6Q8IY17 1366 aa6.95□□□□□ -1.3
LIMA1-215ENST00000552823 IFT172Q9UG01 1749 aa6.95□□□□□ -1.3
LIMA1-215ENST00000552823 MYO3AQ8NEV4 1616 aa6.95□□□□□ -1.3
LIMA1-215ENST00000552823 LRRC7Q96NW7 1537 aa6.95□□□□□ -1.3
LIMA1-215ENST00000552823 NLRP1Q9C000 1473 aa6.95□□□□□ -1.3
LIMA1-215ENST00000552823 MYL6BP14649 208 aa6.95□□□□□ -1.3
LIMA1-215ENST00000552823 LRRFIP2Q9Y608 721 aaKnown RBP6.95□□□□□ -1.3
LIMA1-215ENST00000552823 FAM135BQ49AJ0 1406 aa6.94□□□□□ -1.3
LIMA1-215ENST00000552823 FLIIQ13045 1269 aa6.94□□□□□ -1.3
LIMA1-215ENST00000552823 GSE1Q14687 1217 aa6.94□□□□□ -1.3
LIMA1-215ENST00000552823 GAS2L2Q8NHY3 880 aa6.94□□□□□ -1.3
LIMA1-215ENST00000552823 TAOK2Q9UL54 1235 aa6.94□□□□□ -1.3
LIMA1-215ENST00000552823 MAP2P11137 1827 aaKnown RBP6.94□□□□□ -1.3
LIMA1-215ENST00000552823 CD2BP2O95400 341 aaKnown RBP6.94□□□□□ -1.3
LIMA1-215ENST00000552823 CHAMP1Q96JM3 812 aa6.94□□□□□ -1.3
LIMA1-215ENST00000552823 CPSF1Q10570 1443 aaKnown RBP6.94□□□□□ -1.3
LIMA1-215ENST00000552823 SHPRHQ149N8 1683 aa6.93□□□□□ -1.3
LIMA1-215ENST00000552823 PNMA6EA0A0J9YXQ4 647 aa6.93□□□□□ -1.3
LIMA1-215ENST00000552823 SURF6O75683 361 aaKnown RBP6.93□□□□□ -1.3
LIMA1-215ENST00000552823 TAF7Q15545 349 aaPredicted RBP6.93□□□□□ -1.3
LIMA1-215ENST00000552823 NCBP3Q53F19 620 aaKnown RBP6.93□□□□□ -1.3
LIMA1-215ENST00000552823 MSH6P52701 1360 aa6.93□□□□□ -1.3
LIMA1-215ENST00000552823 CEP85Q6P2H3 762 aa6.93□□□□□ -1.3
LIMA1-215ENST00000552823 CHPF2Q9P2E5 772 aa6.93□□□□□ -1.3
LIMA1-215ENST00000552823 COL3A1P02461 1466 aaPredicted RBP6.93□□□□□ -1.3
LIMA1-215ENST00000552823 BTBD11A6QL63 1104 aa6.93□□□□□ -1.3
LIMA1-215ENST00000552823 C1orf141Q5JVX7 400 aa6.93□□□□□ -1.3
LIMA1-215ENST00000552823 KRT28Q7Z3Y7 464 aa6.93□□□□□ -1.3
LIMA1-215ENST00000552823 SIL1Q9H173 461 aa6.93□□□□□ -1.3
LIMA1-215ENST00000552823 USP6P35125 1406 aa6.92□□□□□ -1.3
LIMA1-215ENST00000552823 PI4KAP2A4QPH2 592 aa6.92□□□□□ -1.3
LIMA1-215ENST00000552823 GCP02774 474 aa6.92□□□□□ -1.3
LIMA1-215ENST00000552823 GSPT1P15170 499 aaKnown RBP6.92□□□□□ -1.3
LIMA1-215ENST00000552823 PLEKHM2Q8IWE5 1019 aa6.92□□□□□ -1.3
LIMA1-215ENST00000552823 PI4KAP1Q8N8J0 262 aa6.92□□□□□ -1.3
LIMA1-215ENST00000552823 AXIN2Q9Y2T1 843 aa6.92□□□□□ -1.3
LIMA1-215ENST00000552823 CCDC30Q5VVM6 783 aa6.92□□□□□ -1.3
LIMA1-215ENST00000552823 GCC1Q96CN9 775 aa6.92□□□□□ -1.3
LIMA1-215ENST00000552823 UBTFL1P0CB47 393 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-215ENST00000552823 SDSP20132 328 aa6.91□□□□□ -1.3
LIMA1-215ENST00000552823 ANKRD24Q8TF21 1146 aa6.91□□□□□ -1.3
LIMA1-215ENST00000552823 ANO2Q9NQ90 1003 aa6.91□□□□□ -1.3
LIMA1-215ENST00000552823 STRN4Q9NRL3 753 aa6.91□□□□□ -1.3
LIMA1-215ENST00000552823 FLT4P35916 1363 aa6.91□□□□□ -1.3
LIMA1-215ENST00000552823 ATP7BP35670 1465 aa6.91□□□□□ -1.3
LIMA1-215ENST00000552823 GNAI2P04899 355 aa6.91□□□□□ -1.3
LIMA1-215ENST00000552823 PROSER3Q2NL68 480 aa6.91□□□□□ -1.3
LIMA1-215ENST00000552823 CWF19L2Q2TBE0 894 aaKnown RBP6.91□□□□□ -1.3
LIMA1-215ENST00000552823 CHMP4BQ9H444 224 aaKnown RBP6.91□□□□□ -1.3
LIMA1-215ENST00000552823 C9orf78Q9NZ63 289 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-215ENST00000552823 PA2G4Q9UQ80 394 aaKnown RBP6.91□□□□□ -1.3
LIMA1-215ENST00000552823 CHMP3Q9Y3E7 222 aa6.91□□□□□ -1.3
LIMA1-215ENST00000552823 PLEKHG1Q9ULL1 1385 aa6.91□□□□□ -1.3
LIMA1-215ENST00000552823 SRGAP3O43295 1099 aa6.91□□□□□ -1.3
LIMA1-215ENST00000552823 ATF3P18847 181 aa6.91□□□□□ -1.3
LIMA1-215ENST00000552823 ANKRD44Q8N8A2 993 aa6.91□□□□□ -1.3
LIMA1-215ENST00000552823 HMMRO75330 724 aa6.9□□□□□ -1.3
LIMA1-215ENST00000552823 CDC45O75419 566 aa6.9□□□□□ -1.3
LIMA1-215ENST00000552823 NBPF7P0C2Y1 421 aaPredicted RBP6.9□□□□□ -1.3
LIMA1-215ENST00000552823 KLHDC4Q8TBB5 520 aa6.9□□□□□ -1.3
LIMA1-215ENST00000552823 CCDC85AQ96PX6 553 aaPredicted RBP6.9□□□□□ -1.3
LIMA1-215ENST00000552823 UPF3BQ9BZI7 483 aaKnown RBP6.9□□□□□ -1.3
LIMA1-215ENST00000552823 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.9□□□□□ -1.3
LIMA1-215ENST00000552823 ABCC4O15439 1325 aa6.9□□□□□ -1.3
LIMA1-215ENST00000552823 PPP4R3CPQ6ZMV5 832 aa6.9□□□□□ -1.31
LIMA1-215ENST00000552823 ARHGAP45Q92619 1136 aa6.9□□□□□ -1.31
LIMA1-215ENST00000552823 DCTPP1Q9H773 170 aa6.9□□□□□ -1.31
LIMA1-215ENST00000552823 AAMPQ13685 434 aa6.89□□□□□ -1.31
LIMA1-215ENST00000552823 PPP1R42Q7Z4L9 355 aa6.89□□□□□ -1.31
LIMA1-215ENST00000552823 AATKQ6ZMQ8 1374 aa6.89□□□□□ -1.31
LIMA1-215ENST00000552823 PTCD1O75127 700 aaKnown RBP6.89□□□□□ -1.31
LIMA1-215ENST00000552823 RAPGEF4Q8WZA2 1011 aa6.89□□□□□ -1.31
LIMA1-215ENST00000552823 SIRT1Q96EB6 747 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms