RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 SETDB1Q15047 1291 aa10.7□□□□□ -0.7
VPS13D-212ENST00000543766 PPP1R12AO14974 1030 aaPredicted RBP10.69□□□□□ -0.7
VPS13D-212ENST00000543766 SETSIPP0DME0 302 aa10.69□□□□□ -0.7
VPS13D-212ENST00000543766 MORC1Q86VD1 984 aa10.69□□□□□ -0.7
VPS13D-212ENST00000543766 FAM184AQ8NB25 1140 aa10.69□□□□□ -0.7
VPS13D-212ENST00000543766 PANK2Q9BZ23 570 aa10.69□□□□□ -0.7
VPS13D-212ENST00000543766 HFM1A2PYH4 1435 aa10.69□□□□□ -0.7
VPS13D-212ENST00000543766 CCDC189A1A4V9 331 aa10.69□□□□□ -0.7
VPS13D-212ENST00000543766 GIMAP6Q6P9H5 292 aa10.69□□□□□ -0.7
VPS13D-212ENST00000543766 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.69□□□□□ -0.7
VPS13D-212ENST00000543766 C22orf23Q9BZE7 217 aa10.69□□□□□ -0.7
VPS13D-212ENST00000543766 POGKQ9P215 609 aa10.69□□□□□ -0.7
VPS13D-212ENST00000543766 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.69□□□□□ -0.72e-6■■■■■ 55.4
VPS13D-212ENST00000543766 CCDC175P0C221 793 aa10.69□□□□□ -0.7
VPS13D-212ENST00000543766 FAM210AQ96ND0 272 aa10.69□□□□□ -0.7
VPS13D-212ENST00000543766 DISP1Q96F81 1524 aa10.68□□□□□ -0.7
VPS13D-212ENST00000543766 MAP2K2P36507 400 aa10.68□□□□□ -0.7
VPS13D-212ENST00000543766 TAX1BP1Q86VP1 789 aa10.68□□□□□ -0.7
VPS13D-212ENST00000543766 PMM1Q92871 262 aa10.68□□□□□ -0.7
VPS13D-212ENST00000543766 CTAGE5O15320 804 aa10.68□□□□□ -0.7
VPS13D-212ENST00000543766 ICE2Q659A1 982 aa10.68□□□□□ -0.7
VPS13D-212ENST00000543766 CADPS2Q86UW7 1296 aa10.68□□□□□ -0.7
VPS13D-212ENST00000543766 ARPC5LQ9BPX5 153 aa10.68□□□□□ -0.7
VPS13D-212ENST00000543766 EXOC6Q8TAG9 804 aa10.68□□□□□ -0.7
VPS13D-212ENST00000543766 ARMC3Q5W041 872 aa10.67□□□□□ -0.7
VPS13D-212ENST00000543766 RABL2AQ9UBK7 228 aaPredicted RBP10.67□□□□□ -0.7
VPS13D-212ENST00000543766 EPRSP07814 1512 aaKnown RBP10.67□□□□□ -0.7
VPS13D-212ENST00000543766 OATP04181 439 aa10.67□□□□□ -0.7
VPS13D-212ENST00000543766 CASQ1P31415 396 aa10.67□□□□□ -0.7
VPS13D-212ENST00000543766 TAF4BQ92750 862 aa10.67□□□□□ -0.7
VPS13D-212ENST00000543766 NEFHP12036 1026 aa10.67□□□□□ -0.7
VPS13D-212ENST00000543766 KIAA2012Q0VF49 1180 aa10.67□□□□□ -0.7
VPS13D-212ENST00000543766 USP25Q9UHP3 1055 aa10.67□□□□□ -0.7
VPS13D-212ENST00000543766 RAPGEF6Q8TEU7 1601 aa10.67□□□□□ -0.7
VPS13D-212ENST00000543766 KDM2BQ8NHM5 1336 aa10.67□□□□□ -0.7
VPS13D-212ENST00000543766 IPO5O00410 1097 aaKnown RBP10.66□□□□□ -0.7
VPS13D-212ENST00000543766 ZRANB2O95218 330 aaKnown RBP eCLIP10.66□□□□□ -0.7
VPS13D-212ENST00000543766 XBP1P17861 261 aa10.66□□□□□ -0.7
VPS13D-212ENST00000543766 DUSP27Q5VZP5 1158 aa10.66□□□□□ -0.7
VPS13D-212ENST00000543766 CHCHD3Q9NX63 227 aaKnown RBP10.66□□□□□ -0.7
VPS13D-212ENST00000543766 XRCC6P12956 609 aaKnown RBP eCLIP10.66□□□□□ -0.7
VPS13D-212ENST00000543766 ELL2O00472 640 aaPredicted RBP10.66□□□□□ -0.7
VPS13D-212ENST00000543766 KIF1CO43896 1103 aaKnown RBP10.66□□□□□ -0.7
VPS13D-212ENST00000543766 ZNF396Q96N95 335 aaPredicted RBP10.66□□□□□ -0.7
VPS13D-212ENST00000543766 KIF16BQ96L93 1317 aa10.66□□□□□ -0.7
VPS13D-212ENST00000543766 FOXD4L1Q9NU39 408 aa10.65□□□□□ -0.7
VPS13D-212ENST00000543766 C8orf34Q49A92 452 aa10.65□□□□□ -0.7
VPS13D-212ENST00000543766 TRIM11Q96F44 468 aa10.65□□□□□ -0.7
VPS13D-212ENST00000543766 BCORL1Q5H9F3 1711 aa10.65□□□□□ -0.7
VPS13D-212ENST00000543766 ERCC4Q92889 916 aaPredicted RBP10.65□□□□□ -0.71
VPS13D-212ENST00000543766 ARHGEF10LQ9HCE6 1279 aa10.65□□□□□ -0.71
VPS13D-212ENST00000543766 ABCA8O94911 1581 aa10.65□□□□□ -0.71
VPS13D-212ENST00000543766 ERCC3P19447 782 aa10.64□□□□□ -0.71
VPS13D-212ENST00000543766 CDC37L1Q7L3B6 337 aa10.64□□□□□ -0.71
VPS13D-212ENST00000543766 KLF15Q9UIH9 416 aa10.64□□□□□ -0.71
VPS13D-212ENST00000543766 ZNF232Q9UNY5 417 aa10.64□□□□□ -0.71
VPS13D-212ENST00000543766 E9PCH4 1651 aa10.64□□□□□ -0.71
VPS13D-212ENST00000543766 SHTN1A0MZ66 631 aa10.64□□□□□ -0.71
VPS13D-212ENST00000543766 FAM160A1Q05DH4 1040 aa10.64□□□□□ -0.71
VPS13D-212ENST00000543766 CHAF1AQ13111 956 aaPredicted RBP10.64□□□□□ -0.71
VPS13D-212ENST00000543766 E2F4Q16254 413 aa10.64□□□□□ -0.71
VPS13D-212ENST00000543766 CTR9Q6PD62 1173 aa10.64□□□□□ -0.71
VPS13D-212ENST00000543766 NFXL1Q6ZNB6 911 aa10.64□□□□□ -0.71
VPS13D-212ENST00000543766 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.64□□□□□ -0.71
VPS13D-212ENST00000543766 KIF2CQ99661 725 aa10.64□□□□□ -0.71
VPS13D-212ENST00000543766 CHGAP10645 457 aaKnown RBP10.64□□□□□ -0.71
VPS13D-212ENST00000543766 USP5P45974 858 aa10.64□□□□□ -0.71
VPS13D-212ENST00000543766 NLRP1Q9C000 1473 aa10.64□□□□□ -0.71
VPS13D-212ENST00000543766 SPC24Q8NBT2 197 aa10.63□□□□□ -0.71
VPS13D-212ENST00000543766 CENPOQ9BU64 300 aa10.63□□□□□ -0.71
VPS13D-212ENST00000543766 FEZ2Q9UHY8 353 aaPredicted RBP10.63□□□□□ -0.71
VPS13D-212ENST00000543766 MIA2Q96PC5 1412 aa10.63□□□□□ -0.71
VPS13D-212ENST00000543766 CCDC91Q7Z6B0 441 aa10.63□□□□□ -0.71
VPS13D-212ENST00000543766 RASSF4Q9H2L5 321 aa10.63□□□□□ -0.71
VPS13D-212ENST00000543766 PDZRN3Q9UPQ7 1066 aa10.63□□□□□ -0.71
VPS13D-212ENST00000543766 ITM2BQ9Y287 266 aa10.63□□□□□ -0.71
VPS13D-212ENST00000543766 ERBB4Q15303 1308 aa10.63□□□□□ -0.71
VPS13D-212ENST00000543766 DYNC1I1O14576 645 aa10.62□□□□□ -0.71
VPS13D-212ENST00000543766 LMBRD2Q68DH5 695 aaPredicted RBP10.62□□□□□ -0.71
VPS13D-212ENST00000543766 TRIM74Q86UV6 250 aa10.62□□□□□ -0.71
VPS13D-212ENST00000543766 TRIM73Q86UV7 250 aa10.62□□□□□ -0.71
VPS13D-212ENST00000543766 PTPRKQ15262 1439 aa10.62□□□□□ -0.71
VPS13D-212ENST00000543766 MTUS2Q5JR59 1369 aa10.62□□□□□ -0.71
VPS13D-212ENST00000543766 AP1ARQ63HQ0 302 aa10.62□□□□□ -0.71
VPS13D-212ENST00000543766 KLHL23Q8NBE8 558 aa10.62□□□□□ -0.71
VPS13D-212ENST00000543766 C10orf67Q8IYJ2 551 aa10.62□□□□□ -0.71
VPS13D-212ENST00000543766 C1orf131Q8NDD1 294 aaKnown RBP10.62□□□□□ -0.71
VPS13D-212ENST00000543766 NAIPQ13075 1403 aa10.61□□□□□ -0.71
VPS13D-212ENST00000543766 PARNO95453 639 aaKnown RBP10.61□□□□□ -0.71
VPS13D-212ENST00000543766 CCDC15Q0P6D6 951 aa10.61□□□□□ -0.71
VPS13D-212ENST00000543766 PNISRQ8TF01 805 aaKnown RBP10.61□□□□□ -0.71
VPS13D-212ENST00000543766 ANTXR1Q9H6X2 564 aa10.61□□□□□ -0.71
VPS13D-212ENST00000543766 ZCCHC11Q5TAX3 1644 aaKnown RBP10.61□□□□□ -0.71
VPS13D-212ENST00000543766 ABCC10Q5T3U5 1492 aa10.61□□□□□ -0.71
VPS13D-212ENST00000543766 USP19O94966 1318 aa10.61□□□□□ -0.71
VPS13D-212ENST00000543766 KNSTRNQ9Y448 316 aa10.61□□□□□ -0.71
VPS13D-212ENST00000543766 RBM47A0AV96 593 aaKnown RBP10.6□□□□□ -0.71
VPS13D-212ENST00000543766 FLT3P36888 993 aa10.6□□□□□ -0.71
VPS13D-212ENST00000543766 EIF4G2P78344 907 aaKnown RBP eCLIP10.6□□□□□ -0.71
VPS13D-212ENST00000543766 TRAIPQ9BWF2 469 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms