RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-209ENST00000542286 SLC4A10Q6U841 1118 aa18.5■□□□□ 0.55
DDX55-209ENST00000542286 NRKQ7Z2Y5 1582 aa18.5■□□□□ 0.55
DDX55-209ENST00000542286 SMARCA5O60264 1052 aaPredicted RBP18.49■□□□□ 0.55
DDX55-209ENST00000542286 SLC4A2P04920 1241 aa18.49■□□□□ 0.55
DDX55-209ENST00000542286 ARHGAP45Q92619 1136 aa18.49■□□□□ 0.55
DDX55-209ENST00000542286 ZNF428Q96B54 188 aa18.49■□□□□ 0.55
DDX55-209ENST00000542286 MEIS3Q99687 375 aa18.48■□□□□ 0.55
DDX55-209ENST00000542286 ANTXR1Q9H6X2 564 aa18.48■□□□□ 0.55
DDX55-209ENST00000542286 ARXQ96QS3 562 aa18.47■□□□□ 0.55
DDX55-209ENST00000542286 API5Q9BZZ5 524 aaKnown RBP18.47■□□□□ 0.55
DDX55-209ENST00000542286 TSPYL4Q9UJ04 414 aa18.47■□□□□ 0.55
DDX55-209ENST00000542286 TBX22Q9Y458 520 aa18.47■□□□□ 0.55
DDX55-209ENST00000542286 CEP170BQ9Y4F5 1589 aaPredicted RBP18.47■□□□□ 0.55
DDX55-209ENST00000542286 SSH2Q76I76 1423 aa18.47■□□□□ 0.55
DDX55-209ENST00000542286 TOPAZ1Q8N9V7 1692 aa18.47■□□□□ 0.55
DDX55-209ENST00000542286 PIK3R4Q99570 1358 aa18.47■□□□□ 0.55
DDX55-209ENST00000542286 SETD1BQ9UPS6 1966 aaKnown RBP18.47■□□□□ 0.55
DDX55-209ENST00000542286 RBM42Q9BTD8 480 aaKnown RBP18.47■□□□□ 0.55
DDX55-209ENST00000542286 FOXD4L1Q9NU39 408 aa18.47■□□□□ 0.55
DDX55-209ENST00000542286 THEMISQ8N1K5 641 aaPredicted RBP18.46■□□□□ 0.55
DDX55-209ENST00000542286 ABTB2Q8N961 1025 aa18.46■□□□□ 0.55
DDX55-209ENST00000542286 MSH6P52701 1360 aa18.46■□□□□ 0.55
DDX55-209ENST00000542286 XPCQ01831 940 aaPredicted RBP18.46■□□□□ 0.55
DDX55-209ENST00000542286 USP31Q70CQ4 1352 aa18.45■□□□□ 0.54
DDX55-209ENST00000542286 RTF1Q92541 710 aaKnown RBP18.45■□□□□ 0.54
DDX55-209ENST00000542286 RGS12O14924 1447 aa18.45■□□□□ 0.54
DDX55-209ENST00000542286 DIP2AQ14689 1571 aa18.44■□□□□ 0.54
DDX55-209ENST00000542286 RRAGDQ9NQL2 400 aaPredicted RBP18.44■□□□□ 0.54
DDX55-209ENST00000542286 GSPT1P15170 499 aaKnown RBP18.44■□□□□ 0.54
DDX55-209ENST00000542286 TBC1D9Q6ZT07 1266 aa18.44■□□□□ 0.54
DDX55-209ENST00000542286 CRB1P82279 1406 aa18.44■□□□□ 0.54
DDX55-209ENST00000542286 CD2BP2O95400 341 aaKnown RBP18.43■□□□□ 0.54
DDX55-209ENST00000542286 GCC1Q96CN9 775 aa18.43■□□□□ 0.54
DDX55-209ENST00000542286 FLT4P35916 1363 aa18.43■□□□□ 0.54
DDX55-209ENST00000542286 PKNOX2Q96KN3 472 aa18.42■□□□□ 0.54
DDX55-209ENST00000542286 HOXC9P31274 260 aa18.41■□□□□ 0.54
DDX55-209ENST00000542286 SBNO1A3KN83 1393 aa18.41■□□□□ 0.54
DDX55-209ENST00000542286 BMP2KLQ5H9B9 411 aa18.41■□□□□ 0.54
DDX55-209ENST00000542286 TSHZ3Q63HK5 1081 aa18.41■□□□□ 0.54
DDX55-209ENST00000542286 INTS3Q68E01 1043 aaKnown RBP18.4■□□□□ 0.54
DDX55-209ENST00000542286 CEP85Q6P2H3 762 aa18.4■□□□□ 0.54
DDX55-209ENST00000542286 PIK3C2AO00443 1686 aa18.4■□□□□ 0.54
DDX55-209ENST00000542286 PLEKHM2Q8IWE5 1019 aa18.4■□□□□ 0.54
DDX55-209ENST00000542286 TTC21AQ8NDW8 1320 aa18.4■□□□□ 0.54
DDX55-209ENST00000542286 ARHGAP23Q9P227 1491 aa18.4■□□□□ 0.54
DDX55-209ENST00000542286 FER1L4A9Z1Z3 1794 aa18.4■□□□□ 0.54
DDX55-209ENST00000542286 NALCNQ8IZF0 1738 aa18.39■□□□□ 0.53
DDX55-209ENST00000542286 RGPD1P0DJD0 1748 aa18.39■□□□□ 0.53
DDX55-209ENST00000542286 SLIT1O75093 1534 aa18.38■□□□□ 0.53
DDX55-209ENST00000542286 ATP10DQ9P241 1426 aa18.38■□□□□ 0.53
DDX55-209ENST00000542286 IGSF1Q8N6C5 1336 aa18.38■□□□□ 0.53
DDX55-209ENST00000542286 KIF2CQ99661 725 aa18.38■□□□□ 0.53
DDX55-209ENST00000542286 GZF1Q9H116 711 aaPredicted RBP18.38■□□□□ 0.53
DDX55-209ENST00000542286 IL17REQ8NFR9 667 aa18.38■□□□□ 0.53
DDX55-209ENST00000542286 DCTPP1Q9H773 170 aa18.38■□□□□ 0.53
DDX55-209ENST00000542286 ARHGEF10O15013 1369 aa18.38■□□□□ 0.53
DDX55-209ENST00000542286 RTL1A6NKG5 1358 aa18.37■□□□□ 0.53
DDX55-209ENST00000542286 GLIPR1L2Q4G1C9 344 aa18.36■□□□□ 0.53
DDX55-209ENST00000542286 LMOD2Q6P5Q4 547 aa18.36■□□□□ 0.53
DDX55-209ENST00000542286 ANKRD44Q8N8A2 993 aa18.36■□□□□ 0.53
DDX55-209ENST00000542286 ESCO1Q5FWF5 840 aa18.36■□□□□ 0.53
DDX55-209ENST00000542286 L1TD1Q5T7N2 865 aaKnown RBP18.36■□□□□ 0.53
DDX55-209ENST00000542286 HSCBQ8IWL3 235 aa18.36■□□□□ 0.53
DDX55-209ENST00000542286 LRRC59Q96AG4 307 aaKnown RBP18.36■□□□□ 0.53
DDX55-209ENST00000542286 EXOC6BQ9Y2D4 811 aa18.36■□□□□ 0.53
DDX55-209ENST00000542286 FKBP5Q13451 457 aaPredicted RBP18.35■□□□□ 0.53
DDX55-209ENST00000542286 FMN2Q9NZ56 1722 aa18.35■□□□□ 0.53
DDX55-209ENST00000542286 CHMP4BQ9H444 224 aaKnown RBP18.34■□□□□ 0.53
DDX55-209ENST00000542286 GNAT3A8MTJ3 354 aa18.34■□□□□ 0.53
DDX55-209ENST00000542286 PHF8Q9UPP1 1060 aa18.34■□□□□ 0.53
DDX55-209ENST00000542286 KDRP35968 1356 aa18.34■□□□□ 0.53
DDX55-209ENST00000542286 KIAA0232Q92628 1395 aa18.34■□□□□ 0.53
DDX55-209ENST00000542286 ANXA1P04083 346 aa18.33■□□□□ 0.53
DDX55-209ENST00000542286 RBM25P49756 843 aaKnown RBP18.33■□□□□ 0.53
DDX55-209ENST00000542286 GAS2L2Q8NHY3 880 aa18.33■□□□□ 0.52
DDX55-209ENST00000542286 LGR6Q9HBX8 967 aa18.33■□□□□ 0.52
DDX55-209ENST00000542286 NBPF6Q5VWK0 638 aa18.32■□□□□ 0.52
DDX55-209ENST00000542286 NBPF4Q96M43 638 aa18.32■□□□□ 0.52
DDX55-209ENST00000542286 ORAI2Q96SN7 254 aa18.32■□□□□ 0.52
DDX55-209ENST00000542286 KCNQ3O43525 872 aa18.32■□□□□ 0.52
DDX55-209ENST00000542286 EIF2S2P20042 333 aaKnown RBP18.32■□□□□ 0.52
DDX55-209ENST00000542286 PHAXQ9H814 394 aaKnown RBP18.32■□□□□ 0.52
DDX55-209ENST00000542286 FLIIQ13045 1269 aa18.31■□□□□ 0.52
DDX55-209ENST00000542286 TTC22Q5TAA0 569 aa18.31■□□□□ 0.52
DDX55-209ENST00000542286 HSP90AB1P08238 724 aaKnown RBP18.3■□□□□ 0.52
DDX55-209ENST00000542286 SDSP20132 328 aa18.3■□□□□ 0.52
DDX55-209ENST00000542286 PTPRCP08575 1304 aa18.3■□□□□ 0.52
DDX55-209ENST00000542286 PNMA6EA0A0J9YXQ4 647 aa18.3■□□□□ 0.52
DDX55-209ENST00000542286 CDC45O75419 566 aa18.3■□□□□ 0.52
DDX55-209ENST00000542286 PSME1Q06323 249 aa18.3■□□□□ 0.52
DDX55-209ENST00000542286 STK31Q9BXU1 1019 aa18.3■□□□□ 0.52
DDX55-209ENST00000542286 NAP1L5Q96NT1 182 aaPredicted RBP18.3■□□□□ 0.52
DDX55-209ENST00000542286 XRN1Q8IZH2 1706 aaKnown RBP18.29■□□□□ 0.52
DDX55-209ENST00000542286 VSIG10Q8N0Z9 540 aa18.29■□□□□ 0.52
DDX55-209ENST00000542286 RPAP2Q8IXW5 612 aaPredicted RBP18.28■□□□□ 0.52
DDX55-209ENST00000542286 MCM4P33991 863 aa18.28■□□□□ 0.52
DDX55-209ENST00000542286 NWD1Q149M9 1564 aa18.28■□□□□ 0.52
DDX55-209ENST00000542286 CHMP5Q9NZZ3 219 aa18.28■□□□□ 0.52
DDX55-209ENST00000542286 ANKLE2Q86XL3 938 aa18.27■□□□□ 0.52
DDX55-209ENST00000542286 MARF1Q9Y4F3 1742 aaKnown RBP18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms