RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 PRIM1P49642 420 aaKnown RBP17.26■□□□□ 0.35
SNHG1-216ENST00000541416 PELP1Q8IZL8 1130 aaKnown RBP17.26■□□□□ 0.35
SNHG1-216ENST00000541416 ZCRB1Q8TBF4 217 aaKnown RBP17.26■□□□□ 0.35
SNHG1-216ENST00000541416 PNPLA7Q6ZV29 1317 aa17.25■□□□□ 0.35
SNHG1-216ENST00000541416 HOXC9P31274 260 aa17.25■□□□□ 0.35
SNHG1-216ENST00000541416 CGNL1Q0VF96 1302 aa17.24■□□□□ 0.35
SNHG1-216ENST00000541416 CCNL1Q9UK58 526 aaPredicted RBP17.24■□□□□ 0.35
SNHG1-216ENST00000541416 USP47Q96K76 1375 aa17.24■□□□□ 0.35
SNHG1-216ENST00000541416 MAP3K19Q56UN5 1328 aa17.23■□□□□ 0.35
SNHG1-216ENST00000541416 SMG6Q86US8 1419 aaKnown RBP17.23■□□□□ 0.35
SNHG1-216ENST00000541416 MSH5O43196 834 aa17.23■□□□□ 0.35
SNHG1-216ENST00000541416 GIGYF1O75420 1035 aaPredicted RBP17.23■□□□□ 0.35
SNHG1-216ENST00000541416 DOT1LQ8TEK3 1739 aa17.23■□□□□ 0.35
SNHG1-216ENST00000541416 RTL1A6NKG5 1358 aa17.23■□□□□ 0.35
SNHG1-216ENST00000541416 LY75O60449 1722 aa17.22■□□□□ 0.35
SNHG1-216ENST00000541416 COL24A1Q17RW2 1714 aa17.22■□□□□ 0.35
SNHG1-216ENST00000541416 GRIN3BO60391 1043 aa17.22■□□□□ 0.35
SNHG1-216ENST00000541416 RAPGEF4Q8WZA2 1011 aa17.22■□□□□ 0.35
SNHG1-216ENST00000541416 KCNQ4P56696 695 aa17.19■□□□□ 0.34
SNHG1-216ENST00000541416 FLAD1Q8NFF5 587 aa17.19■□□□□ 0.34
SNHG1-216ENST00000541416 TUBGCP6Q96RT7 1819 aa17.19■□□□□ 0.34
SNHG1-216ENST00000541416 NSD2O96028 1365 aa17.18■□□□□ 0.34
SNHG1-216ENST00000541416 MEGF6O75095 1541 aa17.18■□□□□ 0.34
SNHG1-216ENST00000541416 ST20-MTHFSA0A0A6YYL1 179 aa17.18■□□□□ 0.34
SNHG1-216ENST00000541416 TATP17735 454 aaPredicted RBP17.17■□□□□ 0.34
SNHG1-216ENST00000541416 NLGN2Q8NFZ4 835 aa17.17■□□□□ 0.34
SNHG1-216ENST00000541416 TESK2Q96S53 571 aa17.17■□□□□ 0.34
SNHG1-216ENST00000541416 SHANK3Q9BYB0 1731 aa17.16■□□□□ 0.34
SNHG1-216ENST00000541416 RGPD2P0DJD1 1756 aa17.16■□□□□ 0.34
SNHG1-216ENST00000541416 PCDH11XQ9BZA7 1347 aa17.16■□□□□ 0.34
SNHG1-216ENST00000541416 PCDH11YQ9BZA8 1340 aa17.16■□□□□ 0.34
SNHG1-216ENST00000541416 TMF1P82094 1093 aa17.15■□□□□ 0.34
SNHG1-216ENST00000541416 RRS1Q15050 365 aaKnown RBP17.15■□□□□ 0.34
SNHG1-216ENST00000541416 NBPF6Q5VWK0 638 aa17.15■□□□□ 0.34
SNHG1-216ENST00000541416 COL23A1Q86Y22 540 aaPredicted RBP17.15■□□□□ 0.34
SNHG1-216ENST00000541416 NBPF4Q96M43 638 aa17.15■□□□□ 0.34
SNHG1-216ENST00000541416 CDCA8Q53HL2 280 aa17.14■□□□□ 0.33
SNHG1-216ENST00000541416 CD2APQ9Y5K6 639 aa17.14■□□□□ 0.33
SNHG1-216ENST00000541416 KIF24Q5T7B8 1368 aa17.14■□□□□ 0.33
SNHG1-216ENST00000541416 CEP350Q5VT06 3117 aa17.14■□□□□ 0.33
SNHG1-216ENST00000541416 FBLN1P23142 703 aa17.13■□□□□ 0.33
SNHG1-216ENST00000541416 SMARCC1Q92922 1105 aaPredicted RBP17.13■□□□□ 0.33
SNHG1-216ENST00000541416 FYB1O15117 783 aa17.12■□□□□ 0.33
SNHG1-216ENST00000541416 USHBP1Q8N6Y0 703 aa17.12■□□□□ 0.33
SNHG1-216ENST00000541416 GGNBP2Q9H3C7 697 aa17.12■□□□□ 0.33
SNHG1-216ENST00000541416 C5P01031 1676 aa17.12■□□□□ 0.33
SNHG1-216ENST00000541416 INSRP06213 1382 aa17.12■□□□□ 0.33
SNHG1-216ENST00000541416 FLT4P35916 1363 aa17.12■□□□□ 0.33
SNHG1-216ENST00000541416 NSD3Q9BZ95 1437 aa17.12■□□□□ 0.33
SNHG1-216ENST00000541416 YBX3P16989 372 aaKnown RBP eCLIP17.11■□□□□ 0.33
SNHG1-216ENST00000541416 MSL1Q68DK7 614 aa17.11■□□□□ 0.33
SNHG1-216ENST00000541416 PALLDQ8WX93 1383 aa17.11■□□□□ 0.33
SNHG1-216ENST00000541416 MPRIPQ6WCQ1 1025 aa17.1■□□□□ 0.33
SNHG1-216ENST00000541416 AK7Q96M32 723 aa17.1■□□□□ 0.33
SNHG1-216ENST00000541416 HSP90AB2PQ58FF8 381 aa17.08■□□□□ 0.32
SNHG1-216ENST00000541416 GPBP1L1Q9HC44 474 aaPredicted RBP17.07■□□□□ 0.32
SNHG1-216ENST00000541416 TAF1LQ8IZX4 1826 aa17.07■□□□□ 0.32
SNHG1-216ENST00000541416 KIF20BQ96Q89 1820 aa17.07■□□□□ 0.32
SNHG1-216ENST00000541416 SPG7Q9UQ90 795 aa17.06■□□□□ 0.32
SNHG1-216ENST00000541416 ATP10DQ9P241 1426 aa17.05■□□□□ 0.32
SNHG1-216ENST00000541416 C4BP0C0L5 1744 aa17.05■□□□□ 0.32
SNHG1-216ENST00000541416 CYP27B1O15528 508 aa17.05■□□□□ 0.32
SNHG1-216ENST00000541416 SSFA2P28290 1259 aa17.04■□□□□ 0.32
SNHG1-216ENST00000541416 ITGB4P16144 1822 aa17.03■□□□□ 0.32
SNHG1-216ENST00000541416 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.02■□□□□ 0.32
SNHG1-216ENST00000541416 PPM1GO15355 546 aaPredicted RBP17.02■□□□□ 0.32
SNHG1-216ENST00000541416 PHF14O94880 888 aa17.02■□□□□ 0.32
SNHG1-216ENST00000541416 NKX1-1Q15270 411 aaPredicted RBP17.02■□□□□ 0.32
SNHG1-216ENST00000541416 PKD1L3Q7Z443 1732 aa17.01■□□□□ 0.31
SNHG1-216ENST00000541416 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.01■□□□□ 0.31
SNHG1-216ENST00000541416 TMOD3Q9NYL9 352 aa17.01■□□□□ 0.31
SNHG1-216ENST00000541416 IGSF1Q8N6C5 1336 aa17■□□□□ 0.31
SNHG1-216ENST00000541416 LOC102724428A0A0B4J2F2 783 aa17■□□□□ 0.31
SNHG1-216ENST00000541416 SIK1P57059 783 aa17■□□□□ 0.31
SNHG1-216ENST00000541416 PIGBQ92521 554 aa17■□□□□ 0.31
SNHG1-216ENST00000541416 UBR3Q6ZT12 1888 aa16.99■□□□□ 0.31
SNHG1-216ENST00000541416 TOGARAM1Q9Y4F4 1720 aa16.99■□□□□ 0.31
SNHG1-216ENST00000541416 IFFO2Q5TF58 517 aa16.99■□□□□ 0.31
SNHG1-216ENST00000541416 EMILIN1Q9Y6C2 1016 aa16.99■□□□□ 0.31
SNHG1-216ENST00000541416 IFNL2Q8IZJ0 200 aa16.98■□□□□ 0.31
SNHG1-216ENST00000541416 ZNF526Q8TF50 670 aaPredicted RBP16.98■□□□□ 0.31
SNHG1-216ENST00000541416 ADCY9O60503 1353 aa16.98■□□□□ 0.31
SNHG1-216ENST00000541416 WASHC2AQ641Q2 1341 aa16.97■□□□□ 0.31
SNHG1-216ENST00000541416 NCAPD2Q15021 1401 aa16.97■□□□□ 0.31
SNHG1-216ENST00000541416 GNPATO15228 680 aa16.97■□□□□ 0.31
SNHG1-216ENST00000541416 HSPA6P17066 643 aa16.96■□□□□ 0.31
SNHG1-216ENST00000541416 ATP6V1AP38606 617 aa16.96■□□□□ 0.31
SNHG1-216ENST00000541416 PLEKHG2Q9H7P9 1386 aa16.95■□□□□ 0.3
SNHG1-216ENST00000541416 LINC00116Q8NCU8 138 aa16.95■□□□□ 0.3
SNHG1-216ENST00000541416 ANKRD26Q9UPS8 1709 aa16.94■□□□□ 0.3
SNHG1-216ENST00000541416 EYA1Q99502 592 aa16.94■□□□□ 0.3
SNHG1-216ENST00000541416 CARD14Q9BXL6 1004 aa16.94■□□□□ 0.3
SNHG1-216ENST00000541416 MAP2P11137 1827 aaKnown RBP16.93■□□□□ 0.3
SNHG1-216ENST00000541416 PHKG2P15735 406 aa16.93■□□□□ 0.3
SNHG1-216ENST00000541416 AMIGO3Q86WK7 504 aa16.93■□□□□ 0.3
SNHG1-216ENST00000541416 ASAP1Q9ULH1 1129 aa16.93■□□□□ 0.3
SNHG1-216ENST00000541416 RTCBQ9Y3I0 505 aaKnown RBP16.93■□□□□ 0.3
SNHG1-216ENST00000541416 HSP90AB1P08238 724 aaKnown RBP16.92■□□□□ 0.3
SNHG1-216ENST00000541416 MMP10P09238 476 aa16.92■□□□□ 0.3
SNHG1-216ENST00000541416 TGFB2P61812 414 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms