RNA–Protein interactions for RNA: ENST00000540848.5

LMO3-224, Transcript of LIM domain only 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LMO3, Length 1,574 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-224ENST00000540848 MTHFSP49914 203 aa13.27□□□□□ -0.29
LMO3-224ENST00000540848 CCDC27Q2M243 656 aa13.27□□□□□ -0.29
LMO3-224ENST00000540848 IQSEC2Q5JU85 1478 aa13.27□□□□□ -0.29
LMO3-224ENST00000540848 SLIT1O75093 1534 aa13.27□□□□□ -0.29
LMO3-224ENST00000540848 ADGRB2O60241 1585 aa13.26□□□□□ -0.29
LMO3-224ENST00000540848 FER1L4A9Z1Z3 1794 aa13.26□□□□□ -0.29
LMO3-224ENST00000540848 C3P01024 1663 aa13.25□□□□□ -0.29
LMO3-224ENST00000540848 ADAM33Q9BZ11 813 aa13.25□□□□□ -0.29
LMO3-224ENST00000540848 DIP2AQ14689 1571 aa13.25□□□□□ -0.29
LMO3-224ENST00000540848 METP08581 1390 aa13.25□□□□□ -0.29
LMO3-224ENST00000540848 EDC4Q6P2E9 1401 aaKnown RBP13.25□□□□□ -0.29
LMO3-224ENST00000540848 ARHGAP23Q9P227 1491 aa13.25□□□□□ -0.29
LMO3-224ENST00000540848 CDC42BPGQ6DT37 1551 aa13.24□□□□□ -0.29
LMO3-224ENST00000540848 SENP3-EIF4A1A0A087X0R7 540 aa13.24□□□□□ -0.29
LMO3-224ENST00000540848 WASLO00401 505 aaPredicted RBP13.24□□□□□ -0.29
LMO3-224ENST00000540848 PNNQ9H307 717 aaKnown RBP13.24□□□□□ -0.29
LMO3-224ENST00000540848 FYB1O15117 783 aa13.24□□□□□ -0.29
LMO3-224ENST00000540848 WDR63Q8IWG1 891 aa13.24□□□□□ -0.29
LMO3-224ENST00000540848 CCDC146Q8IYE0 955 aa13.24□□□□□ -0.29
LMO3-224ENST00000540848 VPS9D1Q9Y2B5 631 aa13.24□□□□□ -0.29
LMO3-224ENST00000540848 EID1Q9Y6B2 187 aa13.24□□□□□ -0.29
LMO3-224ENST00000540848 CPSF1Q10570 1443 aaKnown RBP13.23□□□□□ -0.29
LMO3-224ENST00000540848 ADAMTS13Q76LX8 1427 aa13.23□□□□□ -0.29
LMO3-224ENST00000540848 SPRYD3Q8NCJ5 442 aa13.23□□□□□ -0.29
LMO3-224ENST00000540848 PNPLA6Q8IY17 1366 aa13.23□□□□□ -0.29
LMO3-224ENST00000540848 COL3A1P02461 1466 aaPredicted RBP13.23□□□□□ -0.29
LMO3-224ENST00000540848 WWC1Q8IX03 1113 aa13.22□□□□□ -0.29
LMO3-224ENST00000540848 CABP1Q9NZU7 370 aa13.22□□□□□ -0.29
LMO3-224ENST00000540848 RBM19Q9Y4C8 960 aaKnown RBP13.22□□□□□ -0.29
LMO3-224ENST00000540848 TNNT2P45379 298 aaPredicted RBP13.21□□□□□ -0.29
LMO3-224ENST00000540848 MON2Q7Z3U7 1717 aa13.21□□□□□ -0.29
LMO3-224ENST00000540848 WAPLQ7Z5K2 1190 aa13.21□□□□□ -0.29
LMO3-224ENST00000540848 ZDHHC16Q969W1 377 aa13.21□□□□□ -0.29
LMO3-224ENST00000540848 PCDHGA10Q9Y5H3 936 aa13.21□□□□□ -0.29
LMO3-224ENST00000540848 PPIP5K1Q6PFW1 1433 aa13.2□□□□□ -0.3
LMO3-224ENST00000540848 AKAP12Q02952 1782 aa13.2□□□□□ -0.3
LMO3-224ENST00000540848 ITSN1Q15811 1721 aa13.2□□□□□ -0.3
LMO3-224ENST00000540848 THEMISQ8N1K5 641 aaPredicted RBP13.2□□□□□ -0.3
LMO3-224ENST00000540848 TCP11L2Q8N4U5 519 aa13.2□□□□□ -0.3
LMO3-224ENST00000540848 EXOC6Q8TAG9 804 aa13.2□□□□□ -0.3
LMO3-224ENST00000540848 PTCH1Q13635 1447 aa13.19□□□□□ -0.3
LMO3-224ENST00000540848 AATKQ6ZMQ8 1374 aa13.19□□□□□ -0.3
LMO3-224ENST00000540848 DPYSL4O14531 572 aa13.19□□□□□ -0.3
LMO3-224ENST00000540848 GGNBP2Q9H3C7 697 aa13.19□□□□□ -0.3
LMO3-224ENST00000540848 CT47B1P0C2W7 299 aaPredicted RBP13.18□□□□□ -0.3
LMO3-224ENST00000540848 U2AF1L5P0DN76 240 aaPredicted RBP13.18□□□□□ -0.3
LMO3-224ENST00000540848 PTPREP23469 700 aa13.18□□□□□ -0.3
LMO3-224ENST00000540848 U2AF1Q01081 240 aaKnown RBP eCLIP13.18□□□□□ -0.3
LMO3-224ENST00000540848 ZBED2Q9BTP6 218 aa13.18□□□□□ -0.3
LMO3-224ENST00000540848 SLC4A5Q9BY07 1137 aa13.18□□□□□ -0.3
LMO3-224ENST00000540848 TBX22Q9Y458 520 aa13.18□□□□□ -0.3
LMO3-224ENST00000540848 TOPAZ1Q8N9V7 1692 aa13.17□□□□□ -0.3
LMO3-224ENST00000540848 TXNDC2Q86VQ3 553 aa13.17□□□□□ -0.3
LMO3-224ENST00000540848 NUDT16Q96DE0 195 aaKnown RBP13.17□□□□□ -0.3
LMO3-224ENST00000540848 MYH16Q9H6N6 1097 aa13.17□□□□□ -0.3
LMO3-224ENST00000540848 PIK3R4Q99570 1358 aa13.17□□□□□ -0.3
LMO3-224ENST00000540848 FANCIQ9NVI1 1328 aa13.16□□□□□ -0.3
LMO3-224ENST00000540848 DIAPH1O60610 1272 aaKnown RBP13.16□□□□□ -0.3
LMO3-224ENST00000540848 AAMPQ13685 434 aa13.16□□□□□ -0.3
LMO3-224ENST00000540848 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.16□□□□□ -0.3
LMO3-224ENST00000540848 ROBO2Q9HCK4 1378 aa13.16□□□□□ -0.3
LMO3-224ENST00000540848 IL16Q14005 1332 aa13.16□□□□□ -0.3
LMO3-224ENST00000540848 CDK12Q9NYV4 1490 aaPredicted RBP13.16□□□□□ -0.3
LMO3-224ENST00000540848 PAXIP1Q6ZW49 1069 aaPredicted RBP13.15□□□□□ -0.3
LMO3-224ENST00000540848 MAPK8IP3Q9UPT6 1336 aa13.15□□□□□ -0.3
LMO3-224ENST00000540848 BHMG1C9JSJ3 638 aaPredicted RBP13.15□□□□□ -0.3
LMO3-224ENST00000540848 LTKP29376 864 aa13.15□□□□□ -0.3
LMO3-224ENST00000540848 PDE3AQ14432 1141 aa13.15□□□□□ -0.3
LMO3-224ENST00000540848 TCERG1O14776 1098 aaKnown RBP13.14□□□□□ -0.31
LMO3-224ENST00000540848 FCHSD2O94868 740 aa13.14□□□□□ -0.31
LMO3-224ENST00000540848 CRBNQ96SW2 442 aa13.14□□□□□ -0.31
LMO3-224ENST00000540848 RIMS1Q86UR5 1692 aaKnown RBP13.13□□□□□ -0.31
LMO3-224ENST00000540848 NEFMP07197 916 aa13.13□□□□□ -0.31
LMO3-224ENST00000540848 CFAP44Q96MT7 982 aa13.13□□□□□ -0.31
LMO3-224ENST00000540848 PLEKHF1Q96S99 279 aa13.13□□□□□ -0.31
LMO3-224ENST00000540848 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.13□□□□□ -0.31
LMO3-224ENST00000540848 MAP2P11137 1827 aaKnown RBP13.13□□□□□ -0.31
LMO3-224ENST00000540848 NRKQ7Z2Y5 1582 aa13.13□□□□□ -0.31
LMO3-224ENST00000540848 CEP170BQ9Y4F5 1589 aaPredicted RBP13.13□□□□□ -0.31
LMO3-224ENST00000540848 PLEKHG3A1L390 1219 aa13.12□□□□□ -0.31
LMO3-224ENST00000540848 PLIN1O60240 522 aa13.12□□□□□ -0.31
LMO3-224ENST00000540848 MS4A1P11836 297 aa13.12□□□□□ -0.31
LMO3-224ENST00000540848 COG3Q96JB2 828 aa13.12□□□□□ -0.31
LMO3-224ENST00000540848 XRN1Q8IZH2 1706 aaKnown RBP13.12□□□□□ -0.31
LMO3-224ENST00000540848 U2SURPO15042 1029 aaKnown RBP13.11□□□□□ -0.31
LMO3-224ENST00000540848 PHF14O94880 888 aa13.11□□□□□ -0.31
LMO3-224ENST00000540848 COL9A1P20849 921 aa13.11□□□□□ -0.31
LMO3-224ENST00000540848 KCTD12Q96CX2 325 aaKnown RBP13.11□□□□□ -0.31
LMO3-224ENST00000540848 HCSTQ9UBK5 93 aa13.11□□□□□ -0.31
LMO3-224ENST00000540848 ZNF142P52746 1687 aaPredicted RBP13.11□□□□□ -0.31
LMO3-224ENST00000540848 TMPOP42166 694 aaKnown RBP13.11□□□□□ -0.31
LMO3-224ENST00000540848 CEBPAP49715 358 aaPredicted RBP13.11□□□□□ -0.31
LMO3-224ENST00000540848 CENPQQ7L2Z9 268 aaPredicted RBP13.11□□□□□ -0.31
LMO3-224ENST00000540848 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.11□□□□□ -0.31
LMO3-224ENST00000540848 POLKQ9UBT6 870 aa13.11□□□□□ -0.31
LMO3-224ENST00000540848 PTPRUQ92729 1446 aa13.1□□□□□ -0.31
LMO3-224ENST00000540848 TYW1BQ6NUM6 668 aa13.1□□□□□ -0.31
LMO3-224ENST00000540848 ANKARQ7Z5J8 1434 aa13.1□□□□□ -0.31
LMO3-224ENST00000540848 CALD1Q05682 793 aaKnown RBP13.09□□□□□ -0.31
LMO3-224ENST00000540848 NEUROD2Q15784 382 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms