RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 FAM161AQ3B820 660 aa26.23■■□□□ 1.79
SMPDL3A-203ENST00000539041 C19orf44Q9H6X5 657 aa26.23■■□□□ 1.79
SMPDL3A-203ENST00000539041 FOXO3O43524 673 aa26.23■■□□□ 1.79
SMPDL3A-203ENST00000539041 HTATSF1O43719 755 aaKnown RBP26.22■■□□□ 1.79
SMPDL3A-203ENST00000539041 LTV1Q96GA3 475 aaPredicted RBP26.22■■□□□ 1.79
SMPDL3A-203ENST00000539041 DCCP43146 1447 aa26.2■■□□□ 1.79
SMPDL3A-203ENST00000539041 NCOA3Q9Y6Q9 1424 aa26.2■■□□□ 1.79
SMPDL3A-203ENST00000539041 ZBTB40Q9NUA8 1239 aa26.2■■□□□ 1.78
SMPDL3A-203ENST00000539041 RGPD5Q99666 1765 aa26.2■■□□□ 1.78
SMPDL3A-203ENST00000539041 CACNA1FO60840 1977 aa26.2■■□□□ 1.78
SMPDL3A-203ENST00000539041 XIRP1Q702N8 1843 aaKnown RBP26.19■■□□□ 1.78
SMPDL3A-203ENST00000539041 ABCC4O15439 1325 aa26.18■■□□□ 1.78
SMPDL3A-203ENST00000539041 HDAC1Q13547 482 aaPredicted RBP26.18■■□□□ 1.78
SMPDL3A-203ENST00000539041 C8orf34Q49A92 452 aa26.18■■□□□ 1.78
SMPDL3A-203ENST00000539041 CHMP4BQ9H444 224 aaKnown RBP26.18■■□□□ 1.78
SMPDL3A-203ENST00000539041 MST1RQ04912 1400 aa26.18■■□□□ 1.78
SMPDL3A-203ENST00000539041 API5Q9BZZ5 524 aaKnown RBP26.18■■□□□ 1.78
SMPDL3A-203ENST00000539041 PDZRN3Q9UPQ7 1066 aa26.18■■□□□ 1.78
SMPDL3A-203ENST00000539041 CAMTA1Q9Y6Y1 1673 aa26.17■■□□□ 1.78
SMPDL3A-203ENST00000539041 XPCQ01831 940 aaPredicted RBP26.17■■□□□ 1.78
SMPDL3A-203ENST00000539041 KRT28Q7Z3Y7 464 aa26.17■■□□□ 1.78
SMPDL3A-203ENST00000539041 IPO9Q96P70 1041 aaKnown RBP26.17■■□□□ 1.78
SMPDL3A-203ENST00000539041 TMEM94Q12767 1356 aa26.16■■□□□ 1.78
SMPDL3A-203ENST00000539041 LMO7Q8WWI1 1683 aa26.16■■□□□ 1.78
SMPDL3A-203ENST00000539041 MAP3K5Q99683 1374 aa26.16■■□□□ 1.78
SMPDL3A-203ENST00000539041 USP19O94966 1318 aa26.16■■□□□ 1.78
SMPDL3A-203ENST00000539041 GNAT3A8MTJ3 354 aa26.15■■□□□ 1.78
SMPDL3A-203ENST00000539041 ERICH6Q7L0X2 663 aa26.15■■□□□ 1.78
SMPDL3A-203ENST00000539041 NPM2Q86SE8 214 aaKnown RBP26.15■■□□□ 1.78
SMPDL3A-203ENST00000539041 FAM208AQ9UK61 1670 aaKnown RBP26.15■■□□□ 1.78
SMPDL3A-203ENST00000539041 MSH6P52701 1360 aa26.15■■□□□ 1.78
SMPDL3A-203ENST00000539041 KRT24Q2M2I5 525 aa26.14■■□□□ 1.78
SMPDL3A-203ENST00000539041 ANP32EQ9BTT0 268 aa26.14■■□□□ 1.78
SMPDL3A-203ENST00000539041 TSPYL4Q9UJ04 414 aa26.14■■□□□ 1.78
SMPDL3A-203ENST00000539041 GCP02774 474 aa26.13■■□□□ 1.77
SMPDL3A-203ENST00000539041 ATF3P18847 181 aa26.13■■□□□ 1.77
SMPDL3A-203ENST00000539041 ZBTB7CA1YPR0 619 aa26.12■■□□□ 1.77
SMPDL3A-203ENST00000539041 STRCQ7RTU9 1775 aa26.12■■□□□ 1.77
SMPDL3A-203ENST00000539041 ARHGEF25Q86VW2 580 aa26.12■■□□□ 1.77
SMPDL3A-203ENST00000539041 USHBP1Q8N6Y0 703 aa26.12■■□□□ 1.77
SMPDL3A-203ENST00000539041 ZBTB7BO15156 539 aaPredicted RBP26.11■■□□□ 1.77
SMPDL3A-203ENST00000539041 LMOD2Q6P5Q4 547 aa26.1■■□□□ 1.77
SMPDL3A-203ENST00000539041 NBPF6Q5VWK0 638 aa26.1■■□□□ 1.77
SMPDL3A-203ENST00000539041 NBPF4Q96M43 638 aa26.1■■□□□ 1.77
SMPDL3A-203ENST00000539041 MIS18AQ9NYP9 233 aa26.1■■□□□ 1.77
SMPDL3A-203ENST00000539041 NOP58Q9Y2X3 529 aaKnown RBP26.1■■□□□ 1.77
SMPDL3A-203ENST00000539041 MED1Q15648 1581 aaPredicted RBP26.09■■□□□ 1.77
SMPDL3A-203ENST00000539041 KDM3BQ7LBC6 1761 aa26.09■■□□□ 1.77
SMPDL3A-203ENST00000539041 NCAPD2Q15021 1401 aa26.09■■□□□ 1.77
SMPDL3A-203ENST00000539041 SMC5Q8IY18 1101 aa26.08■■□□□ 1.77
SMPDL3A-203ENST00000539041 HSPA2P54652 639 aa26.07■■□□□ 1.76
SMPDL3A-203ENST00000539041 RGS12O14924 1447 aa26.07■■□□□ 1.76
SMPDL3A-203ENST00000539041 CRYBG1Q9Y4K1 1723 aa26.07■■□□□ 1.76
SMPDL3A-203ENST00000539041 BABAM1Q9NWV8 329 aa26.06■■□□□ 1.76
SMPDL3A-203ENST00000539041 PTPRCP08575 1304 aa26.06■■□□□ 1.76
SMPDL3A-203ENST00000539041 IL17REQ8NFR9 667 aa26.05■■□□□ 1.76
SMPDL3A-203ENST00000539041 N4BP2Q86UW6 1770 aaPredicted RBP26.05■■□□□ 1.76
SMPDL3A-203ENST00000539041 CADPS2Q86UW7 1296 aa26.04■■□□□ 1.76
SMPDL3A-203ENST00000539041 INTS3Q68E01 1043 aaKnown RBP26.03■■□□□ 1.76
SMPDL3A-203ENST00000539041 ZBTB47Q9UFB7 747 aaPredicted RBP26.03■■□□□ 1.76
SMPDL3A-203ENST00000539041 LMTK3Q96Q04 1460 aa26.03■■□□□ 1.76
SMPDL3A-203ENST00000539041 COL18A1P39060 1754 aa26.03■■□□□ 1.76
SMPDL3A-203ENST00000539041 LRRC59Q96AG4 307 aaKnown RBP26.02■■□□□ 1.76
SMPDL3A-203ENST00000539041 PLEKHG5O94827 1062 aa26.02■■□□□ 1.76
SMPDL3A-203ENST00000539041 TAF7Q15545 349 aaPredicted RBP26.02■■□□□ 1.76
SMPDL3A-203ENST00000539041 SOS1Q07889 1333 aaPredicted RBP26.02■■□□□ 1.76
SMPDL3A-203ENST00000539041 ANKRD24Q8TF21 1146 aa26.01■■□□□ 1.75
SMPDL3A-203ENST00000539041 CEMIPQ8WUJ3 1361 aa26.01■■□□□ 1.75
SMPDL3A-203ENST00000539041 DDRGK1Q96HY6 314 aa26■■□□□ 1.75
SMPDL3A-203ENST00000539041 NPHP3Q7Z494 1330 aa25.99■■□□□ 1.75
SMPDL3A-203ENST00000539041 SLC4A2P04920 1241 aa25.99■■□□□ 1.75
SMPDL3A-203ENST00000539041 SIPA1L3O60292 1781 aaPredicted RBP25.98■■□□□ 1.75
SMPDL3A-203ENST00000539041 PLEKHO1Q53GL0 409 aaPredicted RBP25.98■■□□□ 1.75
SMPDL3A-203ENST00000539041 C1orf115Q9H7X2 142 aa25.98■■□□□ 1.75
SMPDL3A-203ENST00000539041 PXDNQ92626 1479 aa25.98■■□□□ 1.75
SMPDL3A-203ENST00000539041 TNS3Q68CZ2 1445 aa25.98■■□□□ 1.75
SMPDL3A-203ENST00000539041 ABCC6O95255 1503 aa25.96■■□□□ 1.75
SMPDL3A-203ENST00000539041 NUCB1Q02818 461 aa25.96■■□□□ 1.75
SMPDL3A-203ENST00000539041 AMOTQ4VCS5 1084 aa25.96■■□□□ 1.75
SMPDL3A-203ENST00000539041 AKAP4Q5JQC9 854 aa25.96■■□□□ 1.75
SMPDL3A-203ENST00000539041 GCC1Q96CN9 775 aa25.96■■□□□ 1.75
SMPDL3A-203ENST00000539041 STK31Q9BXU1 1019 aa25.95■■□□□ 1.75
SMPDL3A-203ENST00000539041 ADAMTS7Q9UKP4 1686 aa25.95■■□□□ 1.74
SMPDL3A-203ENST00000539041 CCDC30Q5VVM6 783 aa25.95■■□□□ 1.74
SMPDL3A-203ENST00000539041 ZNF530Q6P9A1 599 aaPredicted RBP25.95■■□□□ 1.74
SMPDL3A-203ENST00000539041 DDX17Q92841 729 aaKnown RBP25.95■■□□□ 1.74
SMPDL3A-203ENST00000539041 AXIN2Q9Y2T1 843 aa25.95■■□□□ 1.74
SMPDL3A-203ENST00000539041 OVOS2A0A0G2JMS6 1433 aa25.94■■□□□ 1.74
SMPDL3A-203ENST00000539041 KDM4FA0A1W2PPD8 638 aa25.93■■□□□ 1.74
SMPDL3A-203ENST00000539041 ZC3H6P61129 1189 aaKnown RBP25.92■■□□□ 1.74
SMPDL3A-203ENST00000539041 G2E3Q7L622 706 aa25.92■■□□□ 1.74
SMPDL3A-203ENST00000539041 SCN11AQ9UI33 1791 aa25.92■■□□□ 1.74
SMPDL3A-203ENST00000539041 SIRT2Q8IXJ6 389 aa25.92■■□□□ 1.74
SMPDL3A-203ENST00000539041 ERBB3P21860 1342 aa25.91■■□□□ 1.74
SMPDL3A-203ENST00000539041 CHD1LQ86WJ1 897 aa25.91■■□□□ 1.74
SMPDL3A-203ENST00000539041 LGR6Q9HBX8 967 aa25.91■■□□□ 1.74
SMPDL3A-203ENST00000539041 ATP10DQ9P241 1426 aa25.89■■□□□ 1.74
SMPDL3A-203ENST00000539041 C1orf141Q5JVX7 400 aa25.89■■□□□ 1.73
SMPDL3A-203ENST00000539041 SPATA31A3Q5VYP0 1347 aa25.88■■□□□ 1.73
SMPDL3A-203ENST00000539041 CCT4P50991 539 aaKnown RBP25.87■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms