RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ACSBG1Q96GR2 724 aa20.3■□□□□ 0.84
USP28-204ENST00000537642 KNSTRNQ9Y448 316 aa20.3■□□□□ 0.84
USP28-204ENST00000537642 DDX54Q8TDD1 881 aaKnown RBP20.29■□□□□ 0.84
USP28-204ENST00000537642 R3HDM1Q15032 1099 aaKnown RBP20.28■□□□□ 0.84
USP28-204ENST00000537642 ZCRB1Q8TBF4 217 aaKnown RBP20.28■□□□□ 0.84
USP28-204ENST00000537642 AMER1Q5JTC6 1135 aaPredicted RBP20.27■□□□□ 0.84
USP28-204ENST00000537642 RAPGEF4Q8WZA2 1011 aa20.27■□□□□ 0.84
USP28-204ENST00000537642 NCAPD2Q15021 1401 aa20.27■□□□□ 0.83
USP28-204ENST00000537642 BTAF1O14981 1849 aa20.26■□□□□ 0.83
USP28-204ENST00000537642 MORC1Q86VD1 984 aa20.26■□□□□ 0.83
USP28-204ENST00000537642 PER1O15534 1290 aaPredicted RBP20.25■□□□□ 0.83
USP28-204ENST00000537642 TATP17735 454 aaPredicted RBP20.25■□□□□ 0.83
USP28-204ENST00000537642 PROM2Q8N271 834 aa20.25■□□□□ 0.83
USP28-204ENST00000537642 EYA1Q99502 592 aa20.24■□□□□ 0.83
USP28-204ENST00000537642 EIF4A2Q14240 407 aaKnown RBP20.23■□□□□ 0.83
USP28-204ENST00000537642 DOT1LQ8TEK3 1739 aa20.22■□□□□ 0.83
USP28-204ENST00000537642 NBPF14Q5TI25 921 aa20.22■□□□□ 0.83
USP28-204ENST00000537642 TXNRD1Q16881 649 aa20.21■□□□□ 0.83
USP28-204ENST00000537642 PKD1L3Q7Z443 1732 aa20.21■□□□□ 0.83
USP28-204ENST00000537642 LRP5O75197 1615 aa20.2■□□□□ 0.82
USP28-204ENST00000537642 PRIM1P49642 420 aaKnown RBP20.19■□□□□ 0.82
USP28-204ENST00000537642 ANO8Q9HCE9 1232 aaPredicted RBP20.19■□□□□ 0.82
USP28-204ENST00000537642 PCDH11XQ9BZA7 1347 aa20.19■□□□□ 0.82
USP28-204ENST00000537642 PCDH11YQ9BZA8 1340 aa20.19■□□□□ 0.82
USP28-204ENST00000537642 CYP27B1O15528 508 aa20.17■□□□□ 0.82
USP28-204ENST00000537642 CC2D1BQ5T0F9 858 aaKnown RBP20.16■□□□□ 0.82
USP28-204ENST00000537642 SYTL4Q96C24 671 aaPredicted RBP20.16■□□□□ 0.82
USP28-204ENST00000537642 IGSF1Q8N6C5 1336 aa20.16■□□□□ 0.82
USP28-204ENST00000537642 NPC1L1Q9UHC9 1359 aa20.14■□□□□ 0.81
USP28-204ENST00000537642 TOGARAM1Q9Y4F4 1720 aa20.13■□□□□ 0.81
USP28-204ENST00000537642 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.13■□□□□ 0.812e-6■□□□□ 8.4
USP28-204ENST00000537642 SPG7Q9UQ90 795 aa20.13■□□□□ 0.81
USP28-204ENST00000537642 PAPPAQ13219 1627 aa20.13■□□□□ 0.81
USP28-204ENST00000537642 LRRC4BQ9NT99 713 aa20.12■□□□□ 0.81
USP28-204ENST00000537642 ITGB4P16144 1822 aa20.11■□□□□ 0.81
USP28-204ENST00000537642 LY75O60449 1722 aa20.11■□□□□ 0.81
USP28-204ENST00000537642 IL13P35225 146 aa20.11■□□□□ 0.81
USP28-204ENST00000537642 MTHFSP49914 203 aa20.11■□□□□ 0.81
USP28-204ENST00000537642 CNGB1Q14028 1251 aaPredicted RBP20.1■□□□□ 0.81
USP28-204ENST00000537642 NKX1-1Q15270 411 aaPredicted RBP20.1■□□□□ 0.81
USP28-204ENST00000537642 SLC15A2Q16348 729 aa20.1■□□□□ 0.81
USP28-204ENST00000537642 STK32BQ9NY57 414 aa20.1■□□□□ 0.81
USP28-204ENST00000537642 CASZ1Q86V15 1759 aa20.1■□□□□ 0.81
USP28-204ENST00000537642 PLEKHG2Q9H7P9 1386 aa20.09■□□□□ 0.81
USP28-204ENST00000537642 AEBP1Q8IUX7 1158 aa20.09■□□□□ 0.81
USP28-204ENST00000537642 PHKG2P15735 406 aa20.08■□□□□ 0.81
USP28-204ENST00000537642 SLC27A3Q5K4L6 730 aa20.08■□□□□ 0.81
USP28-204ENST00000537642 PDGFDQ9GZP0 370 aaPredicted RBP20.08■□□□□ 0.81
USP28-204ENST00000537642 IFNL2Q8IZJ0 200 aa20.07■□□□□ 0.8
USP28-204ENST00000537642 KCNQ4P56696 695 aa20.06■□□□□ 0.8
USP28-204ENST00000537642 SULT6B1Q6IMI4 303 aa20.06■□□□□ 0.8
USP28-204ENST00000537642 MPRIPQ6WCQ1 1025 aa20.06■□□□□ 0.8
USP28-204ENST00000537642 KDRP35968 1356 aa20.06■□□□□ 0.8
USP28-204ENST00000537642 ZNF827Q17R98 1081 aa20.05■□□□□ 0.8
USP28-204ENST00000537642 PLEKHO1Q53GL0 409 aaPredicted RBP20.04■□□□□ 0.8
USP28-204ENST00000537642 PIGBQ92521 554 aa20.03■□□□□ 0.8
USP28-204ENST00000537642 AKT1S1Q96B36 256 aa20.03■□□□□ 0.8
USP28-204ENST00000537642 CCNL1Q9UK58 526 aaPredicted RBP20.03■□□□□ 0.8
USP28-204ENST00000537642 AMOTQ4VCS5 1084 aa20.02■□□□□ 0.8
USP28-204ENST00000537642 SPON1Q9HCB6 807 aa20.02■□□□□ 0.8
USP28-204ENST00000537642 COL3A1P02461 1466 aaPredicted RBP20.02■□□□□ 0.8
USP28-204ENST00000537642 PALLDQ8WX93 1383 aa20.01■□□□□ 0.79
USP28-204ENST00000537642 DIAPH1O60610 1272 aaKnown RBP20.01■□□□□ 0.79
USP28-204ENST00000537642 ZNF530Q6P9A1 599 aaPredicted RBP20.01■□□□□ 0.79
USP28-204ENST00000537642 TUBGCP6Q96RT7 1819 aa20.01■□□□□ 0.79
USP28-204ENST00000537642 QSER1Q2KHR3 1735 aa20■□□□□ 0.79
USP28-204ENST00000537642 ZBTB7AO95365 584 aa20■□□□□ 0.79
USP28-204ENST00000537642 SMARCC1Q92922 1105 aaPredicted RBP19.99■□□□□ 0.79
USP28-204ENST00000537642 TMOD3Q9NYL9 352 aa19.99■□□□□ 0.79
USP28-204ENST00000537642 TAF1LQ8IZX4 1826 aa19.99■□□□□ 0.79
USP28-204ENST00000537642 C5P01031 1676 aa19.98■□□□□ 0.79
USP28-204ENST00000537642 HSP90AB1P08238 724 aaKnown RBP19.98■□□□□ 0.79
USP28-204ENST00000537642 HMOX1P09601 288 aa19.98■□□□□ 0.79
USP28-204ENST00000537642 KDM6AO15550 1401 aaPredicted RBP19.98■□□□□ 0.79
USP28-204ENST00000537642 DCAF5Q96JK2 942 aa19.97■□□□□ 0.79
USP28-204ENST00000537642 ERVV-2B6SEH9 535 aa19.96■□□□□ 0.79
USP28-204ENST00000537642 ASAP1Q9ULH1 1129 aa19.96■□□□□ 0.79
USP28-204ENST00000537642 ATF5Q9Y2D1 282 aaPredicted RBP19.96■□□□□ 0.79
USP28-204ENST00000537642 PNPLA7Q6ZV29 1317 aa19.96■□□□□ 0.79
USP28-204ENST00000537642 PPP2R1AP30153 589 aa19.95■□□□□ 0.78
USP28-204ENST00000537642 PTGER2P43116 358 aa19.95■□□□□ 0.78
USP28-204ENST00000537642 C1orf141Q5JVX7 400 aa19.95■□□□□ 0.78
USP28-204ENST00000537642 MTFR1LQ9H019 292 aa19.95■□□□□ 0.78
USP28-204ENST00000537642 TFCP2L1Q9NZI6 479 aa19.95■□□□□ 0.78
USP28-204ENST00000537642 ATG3Q9NT62 314 aa19.93■□□□□ 0.78
USP28-204ENST00000537642 PPP1R1BQ9UD71 204 aaPredicted RBP19.93■□□□□ 0.78
USP28-204ENST00000537642 SCN11AQ9UI33 1791 aa19.93■□□□□ 0.78
USP28-204ENST00000537642 LOC102724428A0A0B4J2F2 783 aa19.92■□□□□ 0.78
USP28-204ENST00000537642 U2SURPO15042 1029 aaKnown RBP19.92■□□□□ 0.78
USP28-204ENST00000537642 SIK1P57059 783 aa19.92■□□□□ 0.78
USP28-204ENST00000537642 C4BP0C0L5 1744 aa19.91■□□□□ 0.78
USP28-204ENST00000537642 VIRMAQ69YN4 1812 aaKnown RBP19.91■□□□□ 0.78
USP28-204ENST00000537642 CABP4P57796 275 aa19.91■□□□□ 0.78
USP28-204ENST00000537642 AKAP4Q5JQC9 854 aa19.91■□□□□ 0.78
USP28-204ENST00000537642 CFAP53Q96M91 514 aa19.91■□□□□ 0.78
USP28-204ENST00000537642 SGIP1Q9BQI5 828 aa19.91■□□□□ 0.78
USP28-204ENST00000537642 MTHFSDQ2M296 383 aaKnown RBP19.9■□□□□ 0.78
USP28-204ENST00000537642 HMGB2P26583 209 aaKnown RBP19.89■□□□□ 0.77
USP28-204ENST00000537642 SLC16A10Q8TF71 515 aa19.89■□□□□ 0.77
USP28-204ENST00000537642 COL24A1Q17RW2 1714 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms