RNA–Protein interactions for RNA: ENST00000519004.5

PABPC1-208, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

TSL 2 BASIC

Gene PABPC1, Length 2,401 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-208ENST00000519004 CUL4AQ13619 759 aa16.3■□□□□ 0.2
PABPC1-208ENST00000519004 PSEN1P49768 467 aa16.29■□□□□ 0.2
PABPC1-208ENST00000519004 FOXD4L6Q3SYB3 417 aaPredicted RBP16.29■□□□□ 0.2
PABPC1-208ENST00000519004 FBXO38Q6PIJ6 1188 aa16.29■□□□□ 0.2
PABPC1-208ENST00000519004 FOXD4L3Q6VB84 417 aaPredicted RBP16.29■□□□□ 0.2
PABPC1-208ENST00000519004 TMEM87AQ8NBN3 555 aa16.29■□□□□ 0.2
PABPC1-208ENST00000519004 NOL10Q9BSC4 688 aaKnown RBP16.29■□□□□ 0.2
PABPC1-208ENST00000519004 ARHGEF5Q12774 1597 aa16.29■□□□□ 0.2
PABPC1-208ENST00000519004 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.29■□□□□ 0.2
PABPC1-208ENST00000519004 REC8O95072 547 aa16.28■□□□□ 0.2
PABPC1-208ENST00000519004 BRD2P25440 801 aaKnown RBP16.28■□□□□ 0.2
PABPC1-208ENST00000519004 NFATC2IPQ8NCF5 419 aa16.28■□□□□ 0.2
PABPC1-208ENST00000519004 RSPH14Q9UHP6 348 aa16.28■□□□□ 0.2
PABPC1-208ENST00000519004 MORC1Q86VD1 984 aa16.28■□□□□ 0.2
PABPC1-208ENST00000519004 ZNF446Q9NWS9 450 aa16.27■□□□□ 0.2
PABPC1-208ENST00000519004 LRMPQ12912 555 aa16.27■□□□□ 0.19
PABPC1-208ENST00000519004 SLFNL1Q499Z3 407 aa16.27■□□□□ 0.19
PABPC1-208ENST00000519004 IFT57Q9NWB7 429 aa16.27■□□□□ 0.19
PABPC1-208ENST00000519004 SLC52A1Q9NWF4 448 aa16.27■□□□□ 0.19
PABPC1-208ENST00000519004 IQGAP3Q86VI3 1631 aa16.27■□□□□ 0.19
PABPC1-208ENST00000519004 TNNT3P45378 269 aaPredicted RBP16.26■□□□□ 0.19
PABPC1-208ENST00000519004 DUOX2Q9NRD8 1548 aa16.26■□□□□ 0.19
PABPC1-208ENST00000519004 CD109Q6YHK3 1445 aa16.26■□□□□ 0.19
PABPC1-208ENST00000519004 ZNF215Q9UL58 517 aaPredicted RBP16.26■□□□□ 0.19
PABPC1-208ENST00000519004 ERCC6Q03468 1493 aa16.25■□□□□ 0.19
PABPC1-208ENST00000519004 HNRNPMP52272 730 aaKnown RBP eCLIP16.25■□□□□ 0.19
PABPC1-208ENST00000519004 MLECQ14165 292 aa16.25■□□□□ 0.19
PABPC1-208ENST00000519004 RASSF4Q9H2L5 321 aa16.25■□□□□ 0.19
PABPC1-208ENST00000519004 SPAG9O60271 1321 aaKnown RBP16.25■□□□□ 0.19
PABPC1-208ENST00000519004 ERBB3P21860 1342 aa16.25■□□□□ 0.19
PABPC1-208ENST00000519004 RPAP1Q9BWH6 1393 aaPredicted RBP16.25■□□□□ 0.19
PABPC1-208ENST00000519004 DHX16O60231 1041 aaKnown RBP16.25■□□□□ 0.19
PABPC1-208ENST00000519004 INTS4Q96HW7 963 aaKnown RBP16.25■□□□□ 0.19
PABPC1-208ENST00000519004 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.25■□□□□ 0.19
PABPC1-208ENST00000519004 V9GYY5 206 aaPredicted RBP16.25■□□□□ 0.19
PABPC1-208ENST00000519004 ADAMTS12P58397 1594 aa16.24■□□□□ 0.19
PABPC1-208ENST00000519004 U2SURPO15042 1029 aaKnown RBP16.24■□□□□ 0.19
PABPC1-208ENST00000519004 MTHFSP49914 203 aa16.24■□□□□ 0.19
PABPC1-208ENST00000519004 NEK4P51957 841 aa16.24■□□□□ 0.19
PABPC1-208ENST00000519004 MUM1L1Q5H9M0 696 aa16.24■□□□□ 0.19
PABPC1-208ENST00000519004 GIMAP6Q6P9H5 292 aa16.24■□□□□ 0.19
PABPC1-208ENST00000519004 CCDC186Q7Z3E2 898 aa16.24■□□□□ 0.19
PABPC1-208ENST00000519004 TRIM35Q9UPQ4 493 aa16.24■□□□□ 0.19
PABPC1-208ENST00000519004 NSD3Q9BZ95 1437 aa16.24■□□□□ 0.19
PABPC1-208ENST00000519004 ELF2Q15723 593 aa16.24■□□□□ 0.19
PABPC1-208ENST00000519004 RTF1Q92541 710 aaKnown RBP16.24■□□□□ 0.19
PABPC1-208ENST00000519004 TCHHQ07283 1943 aa16.23■□□□□ 0.19
PABPC1-208ENST00000519004 SPHKAPQ2M3C7 1700 aa16.23■□□□□ 0.19
PABPC1-208ENST00000519004 MCM2P49736 904 aa16.23■□□□□ 0.19
PABPC1-208ENST00000519004 ALDH1L2Q3SY69 923 aa16.23■□□□□ 0.19
PABPC1-208ENST00000519004 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.23■□□□□ 0.19
PABPC1-208ENST00000519004 HDAC5Q9UQL6 1122 aa16.23■□□□□ 0.19
PABPC1-208ENST00000519004 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.23■□□□□ 0.19
PABPC1-208ENST00000519004 PIK3R4Q99570 1358 aa16.23■□□□□ 0.19
PABPC1-208ENST00000519004 SDSP20132 328 aa16.23■□□□□ 0.19
PABPC1-208ENST00000519004 SRPK2P78362 688 aaKnown RBP16.23■□□□□ 0.19
PABPC1-208ENST00000519004 CEP135Q66GS9 1140 aa16.23■□□□□ 0.19
PABPC1-208ENST00000519004 IFT140Q96RY7 1462 aa16.22■□□□□ 0.19
PABPC1-208ENST00000519004 LOC102724159A0A0B4J2E5 919 aa16.22■□□□□ 0.19
PABPC1-208ENST00000519004 U2AF1L5P0DN76 240 aaPredicted RBP16.22■□□□□ 0.19
PABPC1-208ENST00000519004 UBE2HP62256 183 aa16.22■□□□□ 0.19
PABPC1-208ENST00000519004 U2AF1Q01081 240 aaKnown RBP eCLIP16.22■□□□□ 0.19
PABPC1-208ENST00000519004 PWP2Q15269 919 aaKnown RBP16.22■□□□□ 0.19
PABPC1-208ENST00000519004 C16orf71Q8IYS4 520 aaPredicted RBP16.22■□□□□ 0.19
PABPC1-208ENST00000519004 CNPY2Q9Y2B0 182 aa16.22■□□□□ 0.19
PABPC1-208ENST00000519004 IL16Q14005 1332 aa16.22■□□□□ 0.19
PABPC1-208ENST00000519004 TPD52L1Q16890 204 aaPredicted RBP16.21■□□□□ 0.19
PABPC1-208ENST00000519004 ZSCAN25Q6NSZ9 544 aa16.21■□□□□ 0.19
PABPC1-208ENST00000519004 SIRT1Q96EB6 747 aa16.21■□□□□ 0.19
PABPC1-208ENST00000519004 ERO1AQ96HE7 468 aa16.21■□□□□ 0.19
PABPC1-208ENST00000519004 CFAP53Q96M91 514 aa16.21■□□□□ 0.19
PABPC1-208ENST00000519004 SRCIN1Q9C0H9 1055 aa16.21■□□□□ 0.19
PABPC1-208ENST00000519004 POLKQ9UBT6 870 aa16.21■□□□□ 0.19
PABPC1-208ENST00000519004 WDR33Q9C0J8 1336 aaKnown RBP16.21■□□□□ 0.19
PABPC1-208ENST00000519004 BMS1Q14692 1282 aaKnown RBP16.21■□□□□ 0.19
PABPC1-208ENST00000519004 SYT10Q6XYQ8 523 aa16.21■□□□□ 0.19
PABPC1-208ENST00000519004 GTF3C6Q969F1 213 aa16.21■□□□□ 0.19
PABPC1-208ENST00000519004 TMX1Q9H3N1 280 aa16.21■□□□□ 0.19
PABPC1-208ENST00000519004 MYOM2P54296 1465 aa16.21■□□□□ 0.18
PABPC1-208ENST00000519004 GTF2A1P52655 376 aaPredicted RBP16.2■□□□□ 0.18
PABPC1-208ENST00000519004 CASC1Q6TDU7 716 aa16.2■□□□□ 0.18
PABPC1-208ENST00000519004 NEK11Q8NG66 645 aa16.2■□□□□ 0.18
PABPC1-208ENST00000519004 NRBP1Q9UHY1 535 aa16.2■□□□□ 0.18
PABPC1-208ENST00000519004 FHOD1Q9Y613 1164 aa16.2■□□□□ 0.18
PABPC1-208ENST00000519004 PTPRCP08575 1304 aa16.2■□□□□ 0.18
PABPC1-208ENST00000519004 TPRNQ4KMQ1 711 aa16.2■□□□□ 0.18
PABPC1-208ENST00000519004 OTUD7AQ8TE49 926 aaPredicted RBP16.2■□□□□ 0.18
PABPC1-208ENST00000519004 ZNF592Q92610 1267 aa16.2■□□□□ 0.18
PABPC1-208ENST00000519004 TMPOP42166 694 aaKnown RBP16.19■□□□□ 0.18
PABPC1-208ENST00000519004 BRPF1P55201 1214 aaPredicted RBP16.19■□□□□ 0.18
PABPC1-208ENST00000519004 RTL1A6NKG5 1358 aa16.19■□□□□ 0.18
PABPC1-208ENST00000519004 ERC2O15083 957 aa16.19■□□□□ 0.18
PABPC1-208ENST00000519004 H2AFXP16104 143 aaPredicted RBP16.19■□□□□ 0.18
PABPC1-208ENST00000519004 PTCH1Q13635 1447 aa16.19■□□□□ 0.18
PABPC1-208ENST00000519004 TRIM66O15016 1216 aa16.18■□□□□ 0.18
PABPC1-208ENST00000519004 PLA2G4AP47712 749 aa16.18■□□□□ 0.18
PABPC1-208ENST00000519004 GYS2P54840 703 aa16.18■□□□□ 0.18
PABPC1-208ENST00000519004 ICE2Q659A1 982 aa16.18■□□□□ 0.18
PABPC1-208ENST00000519004 CTR9Q6PD62 1173 aa16.18■□□□□ 0.18
PABPC1-208ENST00000519004 PLEKHF1Q96S99 279 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms