RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 ANKK1Q8NFD2 765 aa7.61□□□□□ -1.19
HMGB1P23-201ENST00000518743 SIGLEC1Q9BZZ2 1709 aa7.61□□□□□ -1.19
HMGB1P23-201ENST00000518743 PTPRKQ15262 1439 aa7.61□□□□□ -1.19
HMGB1P23-201ENST00000518743 GOLGA8CPA6NN73 597 aa7.6□□□□□ -1.19
HMGB1P23-201ENST00000518743 FBXO45P0C2W1 286 aa7.6□□□□□ -1.19
HMGB1P23-201ENST00000518743 PPP4CP60510 307 aa7.6□□□□□ -1.19
HMGB1P23-201ENST00000518743 NBPF14Q5TI25 921 aa7.6□□□□□ -1.19
HMGB1P23-201ENST00000518743 FAM196BA6NMK8 535 aa7.59□□□□□ -1.19
HMGB1P23-201ENST00000518743 ATP5J2-PTCD1G3V325 749 aa7.59□□□□□ -1.19
HMGB1P23-201ENST00000518743 JUNDP17535 347 aa7.59□□□□□ -1.19
HMGB1P23-201ENST00000518743 ERCC3P19447 782 aa7.59□□□□□ -1.19
HMGB1P23-201ENST00000518743 SLFNL1Q499Z3 407 aa7.59□□□□□ -1.19
HMGB1P23-201ENST00000518743 LARP1Q6PKG0 1096 aaKnown RBP7.59□□□□□ -1.19
HMGB1P23-201ENST00000518743 BRICD5Q6PL45 260 aa7.59□□□□□ -1.19
HMGB1P23-201ENST00000518743 ZFYVE16Q7Z3T8 1539 aa7.58□□□□□ -1.2
HMGB1P23-201ENST00000518743 USP17L3A6NCW0 530 aa7.58□□□□□ -1.2
HMGB1P23-201ENST00000518743 USP17L4A6NCW7 530 aa7.58□□□□□ -1.2
HMGB1P23-201ENST00000518743 E9PSI1 815 aa7.58□□□□□ -1.2
HMGB1P23-201ENST00000518743 F12P00748 615 aaPredicted RBP7.58□□□□□ -1.2
HMGB1P23-201ENST00000518743 SKIP12755 728 aa7.58□□□□□ -1.2
HMGB1P23-201ENST00000518743 MAP7D1Q3KQU3 841 aa7.58□□□□□ -1.2
HMGB1P23-201ENST00000518743 PUS10Q3MIT2 529 aaKnown RBP7.58□□□□□ -1.2
HMGB1P23-201ENST00000518743 KANK4Q5T7N3 995 aaPredicted RBP7.58□□□□□ -1.2
HMGB1P23-201ENST00000518743 PDXDC2PQ6P474 469 aa7.58□□□□□ -1.2
HMGB1P23-201ENST00000518743 USP17L2Q6R6M4 530 aa7.58□□□□□ -1.2
HMGB1P23-201ENST00000518743 USP17L1Q7RTZ2 530 aa7.58□□□□□ -1.2
HMGB1P23-201ENST00000518743 SUPT6HQ7KZ85 1726 aaKnown RBP7.58□□□□□ -1.2
HMGB1P23-201ENST00000518743 USP17L5A8MUK1 530 aa7.57□□□□□ -1.2
HMGB1P23-201ENST00000518743 PTPN5P54829 565 aa7.57□□□□□ -1.2
HMGB1P23-201ENST00000518743 WNT2BQ93097 391 aa7.57□□□□□ -1.2
HMGB1P23-201ENST00000518743 HCSTQ9UBK5 93 aa7.57□□□□□ -1.2
HMGB1P23-201ENST00000518743 NOVA2Q9UNW9 492 aaKnown RBP7.57□□□□□ -1.2
HMGB1P23-201ENST00000518743 PCDHB3Q9Y5E6 796 aa7.57□□□□□ -1.2
HMGB1P23-201ENST00000518743 EFCAB5A4FU69 1503 aa7.57□□□□□ -1.2
HMGB1P23-201ENST00000518743 ARHGEF12Q9NZN5 1544 aa7.57□□□□□ -1.2
HMGB1P23-201ENST00000518743 NEO1Q92859 1461 aa7.56□□□□□ -1.2
HMGB1P23-201ENST00000518743 SENP3-EIF4A1A0A087X0R7 540 aa7.56□□□□□ -1.2
HMGB1P23-201ENST00000518743 CCNYL3P0C7X3 344 aa7.56□□□□□ -1.2
HMGB1P23-201ENST00000518743 ARID4AP29374 1257 aaPredicted RBP7.56□□□□□ -1.2
HMGB1P23-201ENST00000518743 CTHP32929 405 aa7.56□□□□□ -1.2
HMGB1P23-201ENST00000518743 MSS51Q4VC12 460 aa7.56□□□□□ -1.2
HMGB1P23-201ENST00000518743 CDCA8Q53HL2 280 aa7.56□□□□□ -1.2
HMGB1P23-201ENST00000518743 TRIM50Q86XT4 487 aa7.56□□□□□ -1.2
HMGB1P23-201ENST00000518743 SCUBE3Q8IX30 993 aa7.56□□□□□ -1.2
HMGB1P23-201ENST00000518743 ESF1Q9H501 851 aaKnown RBP7.56□□□□□ -1.2
HMGB1P23-201ENST00000518743 TSR3Q9UJK0 312 aaKnown RBP7.56□□□□□ -1.2
HMGB1P23-201ENST00000518743 SETBP1Q9Y6X0 1596 aa7.55□□□□□ -1.2
HMGB1P23-201ENST00000518743 RBM25P49756 843 aaKnown RBP7.55□□□□□ -1.2
HMGB1P23-201ENST00000518743 RNF19BQ6ZMZ0 732 aa7.55□□□□□ -1.2
HMGB1P23-201ENST00000518743 CPS1P31327 1500 aa7.55□□□□□ -1.2
HMGB1P23-201ENST00000518743 RICTORQ6R327 1708 aa7.55□□□□□ -1.2
HMGB1P23-201ENST00000518743 DENND4BO75064 1496 aaPredicted RBP7.55□□□□□ -1.2
HMGB1P23-201ENST00000518743 SOWAHBA6NEL2 793 aa7.54□□□□□ -1.2
HMGB1P23-201ENST00000518743 YY1P25490 414 aa7.54□□□□□ -1.2
HMGB1P23-201ENST00000518743 ATP1A2P50993 1020 aa7.54□□□□□ -1.2
HMGB1P23-201ENST00000518743 EML3Q32P44 896 aa7.54□□□□□ -1.2
HMGB1P23-201ENST00000518743 BLOC1S3Q6QNY0 202 aa7.54□□□□□ -1.2
HMGB1P23-201ENST00000518743 THSD4Q6ZMP0 1018 aa7.54□□□□□ -1.2
HMGB1P23-201ENST00000518743 CCDC125Q86Z20 511 aa7.54□□□□□ -1.2
HMGB1P23-201ENST00000518743 RNF135Q8IUD6 432 aa7.54□□□□□ -1.2
HMGB1P23-201ENST00000518743 FAM200AQ8TCP9 573 aa7.54□□□□□ -1.2
HMGB1P23-201ENST00000518743 CDCA7Q9BWT1 371 aaPredicted RBP7.54□□□□□ -1.2
HMGB1P23-201ENST00000518743 EVA1BQ9NVM1 165 aa7.54□□□□□ -1.2
HMGB1P23-201ENST00000518743 MKRN1Q9UHC7 482 aaKnown RBP7.54□□□□□ -1.2
HMGB1P23-201ENST00000518743 C3P01024 1663 aa7.54□□□□□ -1.2
HMGB1P23-201ENST00000518743 USP17L15C9J2P7 530 aa7.53□□□□□ -1.2
HMGB1P23-201ENST00000518743 USP17L10C9JJH3 530 aa7.53□□□□□ -1.2
HMGB1P23-201ENST00000518743 USP17L13C9JLJ4 530 aa7.53□□□□□ -1.2
HMGB1P23-201ENST00000518743 USP17L12C9JPN9 530 aa7.53□□□□□ -1.2
HMGB1P23-201ENST00000518743 USP17L11C9JVI0 530 aa7.53□□□□□ -1.2
HMGB1P23-201ENST00000518743 USP17L21D6R901 530 aa7.53□□□□□ -1.2
HMGB1P23-201ENST00000518743 USP17L18D6R9N7 530 aa7.53□□□□□ -1.2
HMGB1P23-201ENST00000518743 USP17L22D6RA61 530 aa7.53□□□□□ -1.2
HMGB1P23-201ENST00000518743 USP17L17D6RBQ6 530 aa7.53□□□□□ -1.2
HMGB1P23-201ENST00000518743 USP17L19D6RCP7 530 aa7.53□□□□□ -1.2
HMGB1P23-201ENST00000518743 USP17L20D6RJB6 530 aa7.53□□□□□ -1.2
HMGB1P23-201ENST00000518743 BCAMP50895 628 aa7.53□□□□□ -1.2
HMGB1P23-201ENST00000518743 USP17L24Q0WX57 530 aa7.53□□□□□ -1.2
HMGB1P23-201ENST00000518743 SWI5Q1ZZU3 235 aa7.53□□□□□ -1.2
HMGB1P23-201ENST00000518743 TMEM164Q5U3C3 297 aa7.53□□□□□ -1.2
HMGB1P23-201ENST00000518743 THAP11Q96EK4 314 aa7.53□□□□□ -1.2
HMGB1P23-201ENST00000518743 CEP126Q9P2H0 1117 aa7.53□□□□□ -1.2
HMGB1P23-201ENST00000518743 RBM19Q9Y4C8 960 aaKnown RBP7.53□□□□□ -1.2
HMGB1P23-201ENST00000518743 IQGAP2Q13576 1575 aa7.52□□□□□ -1.21
HMGB1P23-201ENST00000518743 RASA1P20936 1047 aa7.52□□□□□ -1.21
HMGB1P23-201ENST00000518743 KCNH2Q12809 1159 aa7.52□□□□□ -1.21
HMGB1P23-201ENST00000518743 FOXD4L5Q5VV16 416 aaPredicted RBP7.52□□□□□ -1.21
HMGB1P23-201ENST00000518743 FOXD4L4Q8WXT5 416 aaPredicted RBP7.52□□□□□ -1.21
HMGB1P23-201ENST00000518743 CLP1Q92989 425 aaKnown RBP7.52□□□□□ -1.21
HMGB1P23-201ENST00000518743 NUDT12Q9BQG2 462 aa7.52□□□□□ -1.21
HMGB1P23-201ENST00000518743 HPS5Q9UPZ3 1129 aa7.52□□□□□ -1.21
HMGB1P23-201ENST00000518743 TRAPPC8Q9Y2L5 1435 aa7.52□□□□□ -1.21
HMGB1P23-201ENST00000518743 DXOO77932 396 aaKnown RBP7.51□□□□□ -1.21
HMGB1P23-201ENST00000518743 RNF20Q5VTR2 975 aa7.51□□□□□ -1.21
HMGB1P23-201ENST00000518743 NYAP1Q6ZVC0 841 aa7.51□□□□□ -1.21
HMGB1P23-201ENST00000518743 TXNDC2Q86VQ3 553 aa7.51□□□□□ -1.21
HMGB1P23-201ENST00000518743 SIRT1Q96EB6 747 aa7.51□□□□□ -1.21
HMGB1P23-201ENST00000518743 MAP10Q9P2G4 905 aa7.51□□□□□ -1.21
HMGB1P23-201ENST00000518743 ZMIZ1Q9ULJ6 1067 aa7.51□□□□□ -1.21
HMGB1P23-201ENST00000518743 PCDHB9Q9Y5E1 797 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms