RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 CHMP4CQ96CF2 233 aa15.68■□□□□ 0.1
TCOF1-213ENST00000514442 LRPPRCP42704 1394 aaKnown RBP15.68■□□□□ 0.1
TCOF1-213ENST00000514442 DHX16O60231 1041 aaKnown RBP15.68■□□□□ 0.1
TCOF1-213ENST00000514442 TPD52L1Q16890 204 aaPredicted RBP15.68■□□□□ 0.1
TCOF1-213ENST00000514442 TSPYL1Q9H0U9 437 aa15.68■□□□□ 0.1
TCOF1-213ENST00000514442 SETQ01105 290 aaPredicted RBP15.67■□□□□ 0.1
TCOF1-213ENST00000514442 BICD2Q8TD16 824 aa15.67■□□□□ 0.1
TCOF1-213ENST00000514442 IL1RAPL2Q9NP60 686 aa15.67■□□□□ 0.1
TCOF1-213ENST00000514442 SRGAP3O43295 1099 aa15.67■□□□□ 0.1
TCOF1-213ENST00000514442 KLHL40Q2TBA0 621 aa15.67■□□□□ 0.1
TCOF1-213ENST00000514442 MPNDQ8N594 471 aa15.67■□□□□ 0.1
TCOF1-213ENST00000514442 TCOF1Q13428 1488 aaKnown RBP15.67■□□□□ 0.1
TCOF1-213ENST00000514442 MAPK8IP2Q13387 824 aaPredicted RBP15.67■□□□□ 0.1
TCOF1-213ENST00000514442 SYCE3A1L190 88 aa15.67■□□□□ 0.1
TCOF1-213ENST00000514442 IGHDP01880 384 aa15.67■□□□□ 0.1
TCOF1-213ENST00000514442 KLHL34Q8N239 644 aa15.67■□□□□ 0.1
TCOF1-213ENST00000514442 TRIM34Q9BYJ4 488 aa15.66■□□□□ 0.1
TCOF1-213ENST00000514442 PES1O00541 588 aaKnown RBP15.66■□□□□ 0.1
TCOF1-213ENST00000514442 SSFA2P28290 1259 aa15.66■□□□□ 0.1
TCOF1-213ENST00000514442 CNNM1Q9NRU3 951 aa15.66■□□□□ 0.1
TCOF1-213ENST00000514442 ERICH2A1L162 156 aa15.65■□□□□ 0.1
TCOF1-213ENST00000514442 RALGAPBQ86X10 1494 aa15.65■□□□□ 0.1
TCOF1-213ENST00000514442 BECN2A8MW95 431 aa15.65■□□□□ 0.1
TCOF1-213ENST00000514442 ERC1Q8IUD2 1116 aa15.65■□□□□ 0.1
TCOF1-213ENST00000514442 CCDC112Q8NEF3 446 aa15.65■□□□□ 0.1
TCOF1-213ENST00000514442 TNRQ92752 1358 aa15.65■□□□□ 0.1
TCOF1-213ENST00000514442 NKTRP30414 1462 aaKnown RBP15.65■□□□□ 0.1
TCOF1-213ENST00000514442 CCDC85AQ96PX6 553 aaPredicted RBP15.64■□□□□ 0.1
TCOF1-213ENST00000514442 PRAG1Q86YV5 1406 aa15.64■□□□□ 0.1
TCOF1-213ENST00000514442 ZNF518AQ6AHZ1 1483 aa15.64■□□□□ 0.09
TCOF1-213ENST00000514442 ACEP12821 1306 aa15.64■□□□□ 0.09
TCOF1-213ENST00000514442 MPRIPQ6WCQ1 1025 aa15.64■□□□□ 0.09
TCOF1-213ENST00000514442 MTMR7Q9Y216 660 aa15.64■□□□□ 0.09
TCOF1-213ENST00000514442 EXOC6BQ9Y2D4 811 aa15.64■□□□□ 0.09
TCOF1-213ENST00000514442 ZKSCAN5Q9Y2L8 839 aa15.64■□□□□ 0.09
TCOF1-213ENST00000514442 CALCOCO1Q9P1Z2 691 aa15.64■□□□□ 0.09
TCOF1-213ENST00000514442 DISP1Q96F81 1524 aa15.64■□□□□ 0.09
TCOF1-213ENST00000514442 FAM83GA6ND36 823 aa15.64■□□□□ 0.09
TCOF1-213ENST00000514442 ERICH4A6NGS2 130 aa15.64■□□□□ 0.09
TCOF1-213ENST00000514442 PTCD1O75127 700 aaKnown RBP15.64■□□□□ 0.09
TCOF1-213ENST00000514442 BCL11BQ9C0K0 894 aaPredicted RBP15.64■□□□□ 0.09
TCOF1-213ENST00000514442 KDM2BQ8NHM5 1336 aa15.63■□□□□ 0.09
TCOF1-213ENST00000514442 SPDYE4A6NLX3 237 aa15.63■□□□□ 0.09
TCOF1-213ENST00000514442 F6X3S4 739 aa15.63■□□□□ 0.09
TCOF1-213ENST00000514442 PPP6R1Q9UPN7 881 aa15.63■□□□□ 0.09
TCOF1-213ENST00000514442 TTC39AQ5SRH9 613 aa15.62■□□□□ 0.09
TCOF1-213ENST00000514442 AACSQ86V21 672 aa15.62■□□□□ 0.09
TCOF1-213ENST00000514442 SPC24Q8NBT2 197 aa15.62■□□□□ 0.09
TCOF1-213ENST00000514442 KIF20AO95235 890 aa15.62■□□□□ 0.09
TCOF1-213ENST00000514442 NCBP3Q53F19 620 aaKnown RBP15.62■□□□□ 0.09
TCOF1-213ENST00000514442 TBC1D2BQ9UPU7 963 aa15.62■□□□□ 0.09
TCOF1-213ENST00000514442 SMARCA5O60264 1052 aaPredicted RBP15.61■□□□□ 0.09
TCOF1-213ENST00000514442 PSMA5P28066 241 aa15.61■□□□□ 0.09
TCOF1-213ENST00000514442 ZSCAN23Q3MJ62 389 aa15.61■□□□□ 0.09
TCOF1-213ENST00000514442 SAMD1Q6SPF0 538 aaPredicted RBP15.61■□□□□ 0.09
TCOF1-213ENST00000514442 PBRM1Q86U86 1689 aa15.61■□□□□ 0.09
TCOF1-213ENST00000514442 NUTM1Q86Y26 1132 aa15.61■□□□□ 0.09
TCOF1-213ENST00000514442 BAG4O95429 457 aaKnown RBP15.6■□□□□ 0.09
TCOF1-213ENST00000514442 MCM2P49736 904 aa15.6■□□□□ 0.09
TCOF1-213ENST00000514442 TAF7Q15545 349 aaPredicted RBP15.6■□□□□ 0.09
TCOF1-213ENST00000514442 ABCC11Q96J66 1382 aa15.6■□□□□ 0.09
TCOF1-213ENST00000514442 CCDC158Q5M9N0 1113 aa15.6■□□□□ 0.09
TCOF1-213ENST00000514442 STK11IPQ8N1F8 1099 aa15.6■□□□□ 0.09
TCOF1-213ENST00000514442 MNS1Q8NEH6 495 aa15.59■□□□□ 0.09
TCOF1-213ENST00000514442 RPAP2Q8IXW5 612 aaPredicted RBP15.59■□□□□ 0.09
TCOF1-213ENST00000514442 RRP12Q5JTH9 1297 aaKnown RBP15.59■□□□□ 0.09
TCOF1-213ENST00000514442 HOMER1Q86YM7 354 aa15.59■□□□□ 0.09
TCOF1-213ENST00000514442 NUP160Q12769 1436 aa15.59■□□□□ 0.09
TCOF1-213ENST00000514442 SEC24BO95487 1268 aa15.58■□□□□ 0.09
TCOF1-213ENST00000514442 CCDC57Q2TAC2 916 aa15.58■□□□□ 0.09
TCOF1-213ENST00000514442 ZRANB1Q9UGI0 708 aa15.58■□□□□ 0.09
TCOF1-213ENST00000514442 NSD2O96028 1365 aa15.58■□□□□ 0.09
TCOF1-213ENST00000514442 KRT28Q7Z3Y7 464 aa15.58■□□□□ 0.08
TCOF1-213ENST00000514442 NOL7Q9UMY1 257 aaKnown RBP15.58■□□□□ 0.08
TCOF1-213ENST00000514442 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.58■□□□□ 0.08
TCOF1-213ENST00000514442 TIGD1Q96MW7 591 aa15.58■□□□□ 0.08
TCOF1-213ENST00000514442 TRIM5Q9C035 493 aa15.58■□□□□ 0.08
TCOF1-213ENST00000514442 SPINK5Q9NQ38 1064 aaPredicted RBP15.58■□□□□ 0.08
TCOF1-213ENST00000514442 TRIM27P14373 513 aa15.58■□□□□ 0.08
TCOF1-213ENST00000514442 ALDH1L2Q3SY69 923 aa15.58■□□□□ 0.08
TCOF1-213ENST00000514442 FSD2A1L4K1 749 aa15.57■□□□□ 0.08
TCOF1-213ENST00000514442 HIP1O00291 1037 aa15.57■□□□□ 0.08
TCOF1-213ENST00000514442 ADAMTS2O95450 1211 aa15.57■□□□□ 0.08
TCOF1-213ENST00000514442 FKBP4Q02790 459 aaKnown RBP eCLIP15.57■□□□□ 0.08
TCOF1-213ENST00000514442 CWC27Q6UX04 472 aaKnown RBP15.57■□□□□ 0.08
TCOF1-213ENST00000514442 BICDL1Q6ZP65 573 aa15.57■□□□□ 0.08
TCOF1-213ENST00000514442 UHRF1BP1LA0JNW5 1464 aa15.57■□□□□ 0.08
TCOF1-213ENST00000514442 STK3Q13188 491 aa15.57■□□□□ 0.08
TCOF1-213ENST00000514442 RIMS2Q9UQ26 1411 aa15.57■□□□□ 0.08
TCOF1-213ENST00000514442 ANKRD36BQ8N2N9 1353 aa15.56■□□□□ 0.08
TCOF1-213ENST00000514442 HSP90AB2PQ58FF8 381 aa15.56■□□□□ 0.08
TCOF1-213ENST00000514442 CCAR2Q8N163 923 aaKnown RBP15.56■□□□□ 0.08
TCOF1-213ENST00000514442 MBIPQ9NS73 344 aa15.56■□□□□ 0.08
TCOF1-213ENST00000514442 RAB3GAP1Q15042 981 aa15.56■□□□□ 0.08
TCOF1-213ENST00000514442 TESK2Q96S53 571 aa15.56■□□□□ 0.08
TCOF1-213ENST00000514442 PHF23Q9BUL5 403 aaPredicted RBP15.56■□□□□ 0.08
TCOF1-213ENST00000514442 ABCA5Q8WWZ7 1642 aa15.56■□□□□ 0.08
TCOF1-213ENST00000514442 SAFBQ15424 915 aaKnown RBP eCLIP15.55■□□□□ 0.08
TCOF1-213ENST00000514442 SNX21Q969T3 373 aa15.55■□□□□ 0.08
TCOF1-213ENST00000514442 ABCC10Q5T3U5 1492 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms