RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 MAGI2Q86UL8 1455 aa17.13■□□□□ 0.33
TCOF1-207ENST00000504761 FLT4P35916 1363 aa17.13■□□□□ 0.33
TCOF1-207ENST00000504761 NEK4P51957 841 aa17.13■□□□□ 0.33
TCOF1-207ENST00000504761 IFNL2Q8IZJ0 200 aa17.13■□□□□ 0.33
TCOF1-207ENST00000504761 MYD88Q99836 296 aa17.13■□□□□ 0.33
TCOF1-207ENST00000504761 PIP4K2AP48426 406 aaPredicted RBP17.12■□□□□ 0.33
TCOF1-207ENST00000504761 JARID2Q92833 1246 aaPredicted RBP17.12■□□□□ 0.33
TCOF1-207ENST00000504761 AACSQ86V21 672 aa17.12■□□□□ 0.33
TCOF1-207ENST00000504761 DNAAF4Q8WXU2 420 aa17.12■□□□□ 0.33
TCOF1-207ENST00000504761 DBF4Q9UBU7 674 aaPredicted RBP17.12■□□□□ 0.33
TCOF1-207ENST00000504761 DDX49Q9Y6V7 483 aaKnown RBP17.12■□□□□ 0.33
TCOF1-207ENST00000504761 HOXC9P31274 260 aa17.12■□□□□ 0.33
TCOF1-207ENST00000504761 NGLY1Q96IV0 654 aa17.11■□□□□ 0.33
TCOF1-207ENST00000504761 CNNM1Q9NRU3 951 aa17.11■□□□□ 0.33
TCOF1-207ENST00000504761 IL13P35225 146 aa17.11■□□□□ 0.33
TCOF1-207ENST00000504761 LRRFIP1Q32MZ4 808 aaKnown RBP17.11■□□□□ 0.33
TCOF1-207ENST00000504761 FAM184AQ8NB25 1140 aa17.11■□□□□ 0.33
TCOF1-207ENST00000504761 NPC1L1Q9UHC9 1359 aa17.1■□□□□ 0.33
TCOF1-207ENST00000504761 CHMP5Q9NZZ3 219 aa17.1■□□□□ 0.33
TCOF1-207ENST00000504761 VAMP4O75379 141 aa17.1■□□□□ 0.33
TCOF1-207ENST00000504761 L1TD1Q5T7N2 865 aaKnown RBP17.1■□□□□ 0.33
TCOF1-207ENST00000504761 RNF20Q5VTR2 975 aa17.1■□□□□ 0.33
TCOF1-207ENST00000504761 BICDL1Q6ZP65 573 aa17.1■□□□□ 0.33
TCOF1-207ENST00000504761 MEIS3Q99687 375 aa17.1■□□□□ 0.33
TCOF1-207ENST00000504761 ZBTB3Q9H5J0 574 aa17.1■□□□□ 0.33
TCOF1-207ENST00000504761 ATP5J2-PTCD1G3V325 749 aa17.1■□□□□ 0.33
TCOF1-207ENST00000504761 H3BQV1 296 aa17.1■□□□□ 0.33
TCOF1-207ENST00000504761 IFFO2Q5TF58 517 aa17.1■□□□□ 0.33
TCOF1-207ENST00000504761 MCTP1Q6DN14 999 aa17.09■□□□□ 0.33
TCOF1-207ENST00000504761 TRPM2O94759 1503 aa17.09■□□□□ 0.33
TCOF1-207ENST00000504761 FOSBP53539 338 aa17.09■□□□□ 0.33
TCOF1-207ENST00000504761 ERC1Q8IUD2 1116 aa17.09■□□□□ 0.33
TCOF1-207ENST00000504761 FBXW7Q969H0 707 aa17.09■□□□□ 0.33
TCOF1-207ENST00000504761 KDM5DQ9BY66 1539 aa17.08■□□□□ 0.33
TCOF1-207ENST00000504761 CCDC57Q2TAC2 916 aa17.08■□□□□ 0.33
TCOF1-207ENST00000504761 CHPF2Q9P2E5 772 aa17.08■□□□□ 0.33
TCOF1-207ENST00000504761 LARP1Q6PKG0 1096 aaKnown RBP17.08■□□□□ 0.32
TCOF1-207ENST00000504761 EXOC5O00471 708 aa17.08■□□□□ 0.32
TCOF1-207ENST00000504761 STARD3NLO95772 234 aa17.08■□□□□ 0.32
TCOF1-207ENST00000504761 FMNL2Q96PY5 1086 aa17.08■□□□□ 0.32
TCOF1-207ENST00000504761 TRIM35Q9UPQ4 493 aa17.08■□□□□ 0.32
TCOF1-207ENST00000504761 MAP3K2Q9Y2U5 619 aa17.08■□□□□ 0.32
TCOF1-207ENST00000504761 VPS37CA5D8V6 355 aaPredicted RBP17.07■□□□□ 0.32
TCOF1-207ENST00000504761 TSHZ3Q63HK5 1081 aa17.07■□□□□ 0.32
TCOF1-207ENST00000504761 EDC4Q6P2E9 1401 aaKnown RBP17.07■□□□□ 0.32
TCOF1-207ENST00000504761 GOLGA6L3A6NEY3 463 aa17.07■□□□□ 0.32
TCOF1-207ENST00000504761 LRRIQ1Q96JM4 1722 aa17.07■□□□□ 0.32
TCOF1-207ENST00000504761 HECW2Q9P2P5 1572 aa17.07■□□□□ 0.32
TCOF1-207ENST00000504761 ERVK-7P63135 1459 aa17.07■□□□□ 0.32
TCOF1-207ENST00000504761 NFKBIBQ15653 356 aa17.06■□□□□ 0.32
TCOF1-207ENST00000504761 ADCY10Q96PN6 1610 aa17.06■□□□□ 0.32
TCOF1-207ENST00000504761 MRPL50Q8N5N7 158 aaKnown RBP17.06■□□□□ 0.32
TCOF1-207ENST00000504761 NFATC2IPQ8NCF5 419 aa17.06■□□□□ 0.32
TCOF1-207ENST00000504761 CWC27Q6UX04 472 aaKnown RBP17.06■□□□□ 0.32
TCOF1-207ENST00000504761 PLEKHG3A1L390 1219 aa17.06■□□□□ 0.32
TCOF1-207ENST00000504761 IP6K1Q92551 441 aa17.06■□□□□ 0.32
TCOF1-207ENST00000504761 CFAP74Q9C0B2 1584 aa17.05■□□□□ 0.32
TCOF1-207ENST00000504761 PTPRCP08575 1304 aa17.05■□□□□ 0.32
TCOF1-207ENST00000504761 GPTP24298 496 aa17.05■□□□□ 0.32
TCOF1-207ENST00000504761 FKBP4Q02790 459 aaKnown RBP eCLIP17.05■□□□□ 0.32
TCOF1-207ENST00000504761 TRDNQ13061 729 aa17.05■□□□□ 0.32
TCOF1-207ENST00000504761 A0A087WZG4 1122 aa17.05■□□□□ 0.32
TCOF1-207ENST00000504761 CLASP1Q7Z460 1538 aa17.05■□□□□ 0.32
TCOF1-207ENST00000504761 DDX11L8A8MPP1 907 aa17.04■□□□□ 0.32
TCOF1-207ENST00000504761 SF3A1Q15459 793 aaKnown RBP17.04■□□□□ 0.32
TCOF1-207ENST00000504761 CDC42BPBQ9Y5S2 1711 aa17.04■□□□□ 0.32
TCOF1-207ENST00000504761 KDM5CP41229 1560 aa17.04■□□□□ 0.32
TCOF1-207ENST00000504761 DRC7Q8IY82 874 aa17.04■□□□□ 0.32
TCOF1-207ENST00000504761 CEP126Q9P2H0 1117 aa17.04■□□□□ 0.32
TCOF1-207ENST00000504761 SMC3Q9UQE7 1217 aa17.04■□□□□ 0.32
TCOF1-207ENST00000504761 SBNO2Q9Y2G9 1366 aa17.04■□□□□ 0.32
TCOF1-207ENST00000504761 CPLX1O14810 134 aa17.04■□□□□ 0.32
TCOF1-207ENST00000504761 ZCRB1Q8TBF4 217 aaKnown RBP17.04■□□□□ 0.32
TCOF1-207ENST00000504761 SYAP1Q96A49 352 aaPredicted RBP17.04■□□□□ 0.32
TCOF1-207ENST00000504761 CCDC8Q9H0W5 538 aaPredicted RBP17.04■□□□□ 0.32
TCOF1-207ENST00000504761 HYPKQ9NX55 129 aa17.04■□□□□ 0.32
TCOF1-207ENST00000504761 ZFYVE9O95405 1425 aa17.03■□□□□ 0.32
TCOF1-207ENST00000504761 HTATSF1O43719 755 aaKnown RBP17.03■□□□□ 0.32
TCOF1-207ENST00000504761 PTMSP20962 102 aa17.03■□□□□ 0.32
TCOF1-207ENST00000504761 KIF3AQ9Y496 699 aa17.03■□□□□ 0.32
TCOF1-207ENST00000504761 MX1P20591 662 aa17.03■□□□□ 0.32
TCOF1-207ENST00000504761 AKAP4Q5JQC9 854 aa17.03■□□□□ 0.32
TCOF1-207ENST00000504761 MPHOSPH8Q99549 860 aa17.03■□□□□ 0.32
TCOF1-207ENST00000504761 UBAP1LF5GYI3 381 aa17.03■□□□□ 0.32
TCOF1-207ENST00000504761 KIF1BPQ96EK5 621 aa17.03■□□□□ 0.32
TCOF1-207ENST00000504761 UBE3BQ7Z3V4 1068 aa17.02■□□□□ 0.32
TCOF1-207ENST00000504761 KLHL34Q8N239 644 aa17.02■□□□□ 0.32
TCOF1-207ENST00000504761 ABCC3O15438 1527 aa17.02■□□□□ 0.32
TCOF1-207ENST00000504761 ROBO2Q9HCK4 1378 aa17.02■□□□□ 0.32
TCOF1-207ENST00000504761 KDM4AO75164 1064 aa17.02■□□□□ 0.31
TCOF1-207ENST00000504761 PPP1R42Q7Z4L9 355 aa17.02■□□□□ 0.31
TCOF1-207ENST00000504761 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.02■□□□□ 0.31
TCOF1-207ENST00000504761 BOLA2Q9H3K6 86 aa17.02■□□□□ 0.31
TCOF1-207ENST00000504761 RAD21O60216 631 aa17.01■□□□□ 0.31
TCOF1-207ENST00000504761 CCDC158Q5M9N0 1113 aa17.01■□□□□ 0.31
TCOF1-207ENST00000504761 RALYLQ86SE5 291 aaKnown RBP17.01■□□□□ 0.31
TCOF1-207ENST00000504761 TTC39AQ5SRH9 613 aa17.01■□□□□ 0.31
TCOF1-207ENST00000504761 NBPF6Q5VWK0 638 aa17.01■□□□□ 0.31
TCOF1-207ENST00000504761 COPS6Q7L5N1 327 aa17.01■□□□□ 0.31
TCOF1-207ENST00000504761 NBPF4Q96M43 638 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms