RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 RRS1Q15050 365 aaKnown RBP13.36□□□□□ -0.27
HDAC3-214ENST00000495485 PPP4R2Q9NY27 417 aa13.36□□□□□ -0.27
HDAC3-214ENST00000495485 PARP4Q9UKK3 1724 aaKnown RBP13.36□□□□□ -0.27
HDAC3-214ENST00000495485 THSD7AQ9UPZ6 1657 aa13.35□□□□□ -0.27
HDAC3-214ENST00000495485 CALD1Q05682 793 aaKnown RBP13.35□□□□□ -0.27
HDAC3-214ENST00000495485 LARP1Q6PKG0 1096 aaKnown RBP13.35□□□□□ -0.27
HDAC3-214ENST00000495485 WWC1Q8IX03 1113 aa13.35□□□□□ -0.27
HDAC3-214ENST00000495485 MYH16Q9H6N6 1097 aa13.35□□□□□ -0.27
HDAC3-214ENST00000495485 PEAK1Q9H792 1746 aa13.35□□□□□ -0.27
HDAC3-214ENST00000495485 SENP3-EIF4A1A0A087X0R7 540 aa13.34□□□□□ -0.27
HDAC3-214ENST00000495485 LMOD3Q0VAK6 560 aa13.34□□□□□ -0.27
HDAC3-214ENST00000495485 CDCA7LQ96GN5 454 aa13.34□□□□□ -0.27
HDAC3-214ENST00000495485 DUSP27Q5VZP5 1158 aa13.33□□□□□ -0.28
HDAC3-214ENST00000495485 EMILIN1Q9Y6C2 1016 aa13.33□□□□□ -0.28
HDAC3-214ENST00000495485 RGS12O14924 1447 aa13.32□□□□□ -0.28
HDAC3-214ENST00000495485 NCAPD2Q15021 1401 aa13.32□□□□□ -0.28
HDAC3-214ENST00000495485 IL13P35225 146 aa13.32□□□□□ -0.28
HDAC3-214ENST00000495485 NEUROD2Q15784 382 aa13.32□□□□□ -0.28
HDAC3-214ENST00000495485 HSP90AB2PQ58FF8 381 aa13.32□□□□□ -0.28
HDAC3-214ENST00000495485 TRMT2AQ8IZ69 625 aaKnown RBP13.32□□□□□ -0.28
HDAC3-214ENST00000495485 PLEKHF1Q96S99 279 aa13.32□□□□□ -0.28
HDAC3-214ENST00000495485 NLRP2Q9NX02 1062 aa13.32□□□□□ -0.28
HDAC3-214ENST00000495485 TMPOP42166 694 aaKnown RBP13.31□□□□□ -0.28
HDAC3-214ENST00000495485 RRP1P56182 461 aaKnown RBP13.31□□□□□ -0.28
HDAC3-214ENST00000495485 SEPT12Q8IYM1 358 aa13.31□□□□□ -0.28
HDAC3-214ENST00000495485 BRWD3Q6RI45 1802 aa13.31□□□□□ -0.28
HDAC3-214ENST00000495485 IL16Q14005 1332 aa13.31□□□□□ -0.28
HDAC3-214ENST00000495485 DISP2A7MBM2 1401 aa13.3□□□□□ -0.28
HDAC3-214ENST00000495485 CT47B1P0C2W7 299 aaPredicted RBP13.3□□□□□ -0.28
HDAC3-214ENST00000495485 IL2RBP14784 551 aa13.3□□□□□ -0.28
HDAC3-214ENST00000495485 FAM98CQ17RN3 349 aaKnown RBP13.3□□□□□ -0.28
HDAC3-214ENST00000495485 RGPD2P0DJD1 1756 aa13.3□□□□□ -0.28
HDAC3-214ENST00000495485 KAT6BQ8WYB5 2073 aa13.29□□□□□ -0.28
HDAC3-214ENST00000495485 FBLN1P23142 703 aa13.29□□□□□ -0.28
HDAC3-214ENST00000495485 PRKAR2BP31323 418 aa13.29□□□□□ -0.28
HDAC3-214ENST00000495485 RIPK4P57078 832 aa13.29□□□□□ -0.28
HDAC3-214ENST00000495485 KRT27Q7Z3Y8 459 aa13.29□□□□□ -0.28
HDAC3-214ENST00000495485 RSPH6AQ9H0K4 717 aa13.29□□□□□ -0.28
HDAC3-214ENST00000495485 BCL9O00512 1426 aa13.29□□□□□ -0.28
HDAC3-214ENST00000495485 A0A0G2JS52 829 aa13.28□□□□□ -0.28
HDAC3-214ENST00000495485 EXOC5O00471 708 aa13.28□□□□□ -0.28
HDAC3-214ENST00000495485 MYT1Q01538 1121 aa13.28□□□□□ -0.28
HDAC3-214ENST00000495485 DDB1Q16531 1140 aa13.28□□□□□ -0.28
HDAC3-214ENST00000495485 CCDC125Q86Z20 511 aa13.28□□□□□ -0.28
HDAC3-214ENST00000495485 RAPGEF4Q8WZA2 1011 aa13.28□□□□□ -0.28
HDAC3-214ENST00000495485 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.28□□□□□ -0.28
HDAC3-214ENST00000495485 USP35Q9P2H5 1018 aa13.28□□□□□ -0.28
HDAC3-214ENST00000495485 IGSF1Q8N6C5 1336 aa13.28□□□□□ -0.28
HDAC3-214ENST00000495485 TNS2Q63HR2 1409 aa13.28□□□□□ -0.28
HDAC3-214ENST00000495485 IRX6P78412 446 aaPredicted RBP13.27□□□□□ -0.29
HDAC3-214ENST00000495485 EIF4A2Q14240 407 aaKnown RBP13.27□□□□□ -0.29
HDAC3-214ENST00000495485 NFE2L2Q16236 605 aa13.27□□□□□ -0.29
HDAC3-214ENST00000495485 LTV1Q96GA3 475 aaPredicted RBP13.27□□□□□ -0.29
HDAC3-214ENST00000495485 RRP7AQ9Y3A4 280 aaKnown RBP13.27□□□□□ -0.29
HDAC3-214ENST00000495485 OVOS2A0A0G2JMS6 1433 aa13.27□□□□□ -0.29
HDAC3-214ENST00000495485 LRRC37A3O60309 1634 aa13.27□□□□□ -0.29
HDAC3-214ENST00000495485 RGPD1P0DJD0 1748 aa13.27□□□□□ -0.29
HDAC3-214ENST00000495485 TATP17735 454 aaPredicted RBP13.26□□□□□ -0.29
HDAC3-214ENST00000495485 KDRP35968 1356 aa13.26□□□□□ -0.29
HDAC3-214ENST00000495485 NBPF6Q5VWK0 638 aa13.26□□□□□ -0.29
HDAC3-214ENST00000495485 NBPF4Q96M43 638 aa13.26□□□□□ -0.29
HDAC3-214ENST00000495485 HMOX1P09601 288 aa13.25□□□□□ -0.29
HDAC3-214ENST00000495485 FAM196AQ6ZSG2 479 aa13.25□□□□□ -0.29
HDAC3-214ENST00000495485 EYA1Q99502 592 aa13.25□□□□□ -0.29
HDAC3-214ENST00000495485 PKD1L3Q7Z443 1732 aa13.25□□□□□ -0.29
HDAC3-214ENST00000495485 MS4A1P11836 297 aa13.24□□□□□ -0.29
HDAC3-214ENST00000495485 ILDR2Q71H61 639 aa13.24□□□□□ -0.29
HDAC3-214ENST00000495485 GNAI1P63096 354 aa13.23□□□□□ -0.29
HDAC3-214ENST00000495485 AMOTQ4VCS5 1084 aa13.23□□□□□ -0.29
HDAC3-214ENST00000495485 ZNF428Q96B54 188 aa13.23□□□□□ -0.29
HDAC3-214ENST00000495485 CCDC136Q96JN2 1154 aa13.23□□□□□ -0.29
HDAC3-214ENST00000495485 SPG7Q9UQ90 795 aa13.23□□□□□ -0.29
HDAC3-214ENST00000495485 PCDH11XQ9BZA7 1347 aa13.22□□□□□ -0.29
HDAC3-214ENST00000495485 PCDH11YQ9BZA8 1340 aa13.22□□□□□ -0.29
HDAC3-214ENST00000495485 SOCS7O14512 581 aa13.22□□□□□ -0.29
HDAC3-214ENST00000495485 SULT6B1Q6IMI4 303 aa13.22□□□□□ -0.29
HDAC3-214ENST00000495485 ZCRB1Q8TBF4 217 aaKnown RBP13.22□□□□□ -0.29
HDAC3-214ENST00000495485 TRIM35Q9UPQ4 493 aa13.22□□□□□ -0.29
HDAC3-214ENST00000495485 SBF2Q86WG5 1849 aa13.21□□□□□ -0.29
HDAC3-214ENST00000495485 HMGB2P26583 209 aaKnown RBP13.21□□□□□ -0.29
HDAC3-214ENST00000495485 CANXP27824 592 aaKnown RBP13.21□□□□□ -0.29
HDAC3-214ENST00000495485 MEGF6O75095 1541 aa13.2□□□□□ -0.3
HDAC3-214ENST00000495485 AAMPQ13685 434 aa13.2□□□□□ -0.3
HDAC3-214ENST00000495485 PLEKHO1Q53GL0 409 aaPredicted RBP13.2□□□□□ -0.3
HDAC3-214ENST00000495485 GAS2L2Q8NHY3 880 aa13.2□□□□□ -0.3
HDAC3-214ENST00000495485 SPINK5Q9NQ38 1064 aaPredicted RBP13.2□□□□□ -0.3
HDAC3-214ENST00000495485 HSP90AB1P08238 724 aaKnown RBP13.19□□□□□ -0.3
HDAC3-214ENST00000495485 PDE3AQ14432 1141 aa13.19□□□□□ -0.3
HDAC3-214ENST00000495485 RTF1Q92541 710 aaKnown RBP13.19□□□□□ -0.3
HDAC3-214ENST00000495485 IFT57Q9NWB7 429 aa13.19□□□□□ -0.3
HDAC3-214ENST00000495485 SHANK3Q9BYB0 1731 aa13.19□□□□□ -0.3
HDAC3-214ENST00000495485 DLG5Q8TDM6 1919 aa13.18□□□□□ -0.3
HDAC3-214ENST00000495485 HTATSF1O43719 755 aaKnown RBP13.18□□□□□ -0.3
HDAC3-214ENST00000495485 SF3B2Q13435 895 aaKnown RBP13.18□□□□□ -0.3
HDAC3-214ENST00000495485 RGPD3A6NKT7 1758 aaPredicted RBP13.17□□□□□ -0.3
HDAC3-214ENST00000495485 RGPD4Q7Z3J3 1758 aa13.17□□□□□ -0.3
HDAC3-214ENST00000495485 IFNL2Q8IZJ0 200 aa13.17□□□□□ -0.3
HDAC3-214ENST00000495485 USHBP1Q8N6Y0 703 aa13.17□□□□□ -0.3
HDAC3-214ENST00000495485 PHACTR3Q96KR7 559 aa13.17□□□□□ -0.3
HDAC3-214ENST00000495485 FANCIQ9NVI1 1328 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms