RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 TMEM132AQ24JP5 1023 aa22.65■■□□□ 1.22
COL27A1-207ENST00000494090 PRDM11Q9NQV5 511 aa22.65■■□□□ 1.22
COL27A1-207ENST00000494090 CTNNA3Q9UI47 895 aa22.65■■□□□ 1.22
COL27A1-207ENST00000494090 SYCP1Q15431 976 aa22.65■■□□□ 1.22
COL27A1-207ENST00000494090 CDKL5O76039 1030 aa22.64■■□□□ 1.21
COL27A1-207ENST00000494090 STIM1Q13586 685 aa22.64■■□□□ 1.21
COL27A1-207ENST00000494090 C20orf194Q5TEA3 1177 aa22.64■■□□□ 1.21
COL27A1-207ENST00000494090 LUC7LQ9NQ29 371 aaKnown RBP22.64■■□□□ 1.21
COL27A1-207ENST00000494090 DDX54Q8TDD1 881 aaKnown RBP22.63■■□□□ 1.21
COL27A1-207ENST00000494090 CCDC69A6NI79 296 aa22.63■■□□□ 1.21
COL27A1-207ENST00000494090 TXLNBQ8N3L3 684 aa22.63■■□□□ 1.21
COL27A1-207ENST00000494090 ME1P48163 572 aa22.63■■□□□ 1.21
COL27A1-207ENST00000494090 KRT32Q14532 448 aa22.63■■□□□ 1.21
COL27A1-207ENST00000494090 SOGA3Q5TF21 947 aa22.63■■□□□ 1.21
COL27A1-207ENST00000494090 ZNHIT6Q9NWK9 470 aaKnown RBP22.62■■□□□ 1.21
COL27A1-207ENST00000494090 NOL7Q9UMY1 257 aaKnown RBP22.62■■□□□ 1.21
COL27A1-207ENST00000494090 PPP6R1Q9UPN7 881 aa22.62■■□□□ 1.21
COL27A1-207ENST00000494090 KCNH5Q8NCM2 988 aa22.62■■□□□ 1.21
COL27A1-207ENST00000494090 JAKMIP1Q96N16 626 aaKnown RBP22.62■■□□□ 1.21
COL27A1-207ENST00000494090 CCDC61Q9Y6R9 512 aa22.62■■□□□ 1.21
COL27A1-207ENST00000494090 CEP126Q9P2H0 1117 aa22.62■■□□□ 1.21
COL27A1-207ENST00000494090 DCTN1Q14203 1278 aa22.62■■□□□ 1.21
COL27A1-207ENST00000494090 SSH1Q8WYL5 1049 aa22.62■■□□□ 1.21
COL27A1-207ENST00000494090 BCL11BQ9C0K0 894 aaPredicted RBP22.62■■□□□ 1.21
COL27A1-207ENST00000494090 CWC27Q6UX04 472 aaKnown RBP22.61■■□□□ 1.21
COL27A1-207ENST00000494090 NOM1Q5C9Z4 860 aaKnown RBP22.61■■□□□ 1.21
COL27A1-207ENST00000494090 NUDT16Q96DE0 195 aaKnown RBP22.61■■□□□ 1.21
COL27A1-207ENST00000494090 IL1RAPL2Q9NP60 686 aa22.61■■□□□ 1.21
COL27A1-207ENST00000494090 BTBD11A6QL63 1104 aa22.61■■□□□ 1.21
COL27A1-207ENST00000494090 SPATA32Q96LK8 384 aa22.61■■□□□ 1.21
COL27A1-207ENST00000494090 CFAP45Q9UL16 551 aa22.61■■□□□ 1.21
COL27A1-207ENST00000494090 LRPPRCP42704 1394 aaKnown RBP22.6■■□□□ 1.21
COL27A1-207ENST00000494090 RAPGEF3O95398 923 aa22.6■■□□□ 1.21
COL27A1-207ENST00000494090 RPRD2Q5VT52 1461 aaKnown RBP22.6■■□□□ 1.21
COL27A1-207ENST00000494090 GNAT3A8MTJ3 354 aa22.6■■□□□ 1.21
COL27A1-207ENST00000494090 SERPINC1P01008 464 aa22.6■■□□□ 1.21
COL27A1-207ENST00000494090 PATL2C9JE40 543 aaKnown RBP22.59■■□□□ 1.21
COL27A1-207ENST00000494090 ESPNB1AK53 854 aa22.59■■□□□ 1.21
COL27A1-207ENST00000494090 MYL6BP14649 208 aa22.58■■□□□ 1.21
COL27A1-207ENST00000494090 RAB11FIP3O75154 756 aa22.58■■□□□ 1.2
COL27A1-207ENST00000494090 DUSP27Q5VZP5 1158 aa22.58■■□□□ 1.2
COL27A1-207ENST00000494090 TTLL5Q6EMB2 1281 aa22.58■■□□□ 1.2
COL27A1-207ENST00000494090 NUP62CLQ9H1M0 184 aa22.57■■□□□ 1.2
COL27A1-207ENST00000494090 KIF14Q15058 1648 aa22.57■■□□□ 1.2
COL27A1-207ENST00000494090 MX1P20591 662 aa22.57■■□□□ 1.2
COL27A1-207ENST00000494090 ATP2B2Q01814 1243 aa22.57■■□□□ 1.2
COL27A1-207ENST00000494090 KIF1BPQ96EK5 621 aa22.56■■□□□ 1.2
COL27A1-207ENST00000494090 EXOC6BQ9Y2D4 811 aa22.56■■□□□ 1.2
COL27A1-207ENST00000494090 CWC15Q9P013 229 aaKnown RBP22.56■■□□□ 1.2
COL27A1-207ENST00000494090 CCDC112Q8NEF3 446 aa22.55■■□□□ 1.2
COL27A1-207ENST00000494090 WASF1Q92558 559 aa22.55■■□□□ 1.2
COL27A1-207ENST00000494090 THUMPD2Q9BTF0 503 aaKnown RBP22.55■■□□□ 1.2
COL27A1-207ENST00000494090 CBFA2T2O43439 604 aa22.55■■□□□ 1.2
COL27A1-207ENST00000494090 STARD3NLO95772 234 aa22.55■■□□□ 1.2
COL27A1-207ENST00000494090 BRPF1P55201 1214 aaPredicted RBP22.55■■□□□ 1.2
COL27A1-207ENST00000494090 RBM10P98175 930 aaKnown RBP22.54■■□□□ 1.2
COL27A1-207ENST00000494090 UBAC1Q9BSL1 405 aa22.54■■□□□ 1.2
COL27A1-207ENST00000494090 IGHMBP2P38935 993 aaKnown RBP22.54■■□□□ 1.2
COL27A1-207ENST00000494090 NUTM1Q86Y26 1132 aa22.54■■□□□ 1.2
COL27A1-207ENST00000494090 SLC26A8Q96RN1 970 aa22.54■■□□□ 1.2
COL27A1-207ENST00000494090 BMP2KQ9NSY1 1161 aaPredicted RBP22.54■■□□□ 1.2
COL27A1-207ENST00000494090 CEP57L1Q8IYX8 460 aa22.54■■□□□ 1.2
COL27A1-207ENST00000494090 NUTM2BA6NNL0 878 aaPredicted RBP22.53■■□□□ 1.2
COL27A1-207ENST00000494090 NUTM2EB1AL46 878 aaPredicted RBP22.53■■□□□ 1.2
COL27A1-207ENST00000494090 GLRX3O76003 335 aaKnown RBP22.53■■□□□ 1.2
COL27A1-207ENST00000494090 CASTP20810 708 aaKnown RBP22.53■■□□□ 1.2
COL27A1-207ENST00000494090 PPFIBP1Q86W92 1011 aa22.53■■□□□ 1.2
COL27A1-207ENST00000494090 NUTM2AQ8IVF1 878 aaPredicted RBP22.53■■□□□ 1.2
COL27A1-207ENST00000494090 FKBP4Q02790 459 aaKnown RBP eCLIP22.53■■□□□ 1.2
COL27A1-207ENST00000494090 MCM10Q7L590 875 aa22.53■■□□□ 1.2
COL27A1-207ENST00000494090 CCDC66A2RUB6 948 aa22.52■■□□□ 1.2
COL27A1-207ENST00000494090 ERLIN2O94905 339 aa22.52■■□□□ 1.2
COL27A1-207ENST00000494090 TDO2P48775 406 aa22.52■■□□□ 1.2
COL27A1-207ENST00000494090 SCAF11Q99590 1463 aaKnown RBP22.51■■□□□ 1.19
COL27A1-207ENST00000494090 PDCL3Q9H2J4 239 aa22.51■■□□□ 1.19
COL27A1-207ENST00000494090 PLB1Q6P1J6 1458 aa22.51■■□□□ 1.19
COL27A1-207ENST00000494090 ZNF652Q9Y2D9 606 aa22.51■■□□□ 1.19
COL27A1-207ENST00000494090 ZSCAN30Q86W11 494 aa22.5■■□□□ 1.19
COL27A1-207ENST00000494090 NUP133Q8WUM0 1156 aa22.5■■□□□ 1.19
COL27A1-207ENST00000494090 ZNF287Q9HBT7 754 aa22.5■■□□□ 1.19
COL27A1-207ENST00000494090 FAM135AQ9P2D6 1515 aa22.5■■□□□ 1.19
COL27A1-207ENST00000494090 NSD2O96028 1365 aa22.5■■□□□ 1.19
COL27A1-207ENST00000494090 MPNDQ8N594 471 aa22.5■■□□□ 1.19
COL27A1-207ENST00000494090 MAP3K11Q16584 847 aa22.5■■□□□ 1.19
COL27A1-207ENST00000494090 MIS18AQ9NYP9 233 aa22.5■■□□□ 1.19
COL27A1-207ENST00000494090 AKAP2Q9Y2D5 859 aa22.5■■□□□ 1.19
COL27A1-207ENST00000494090 SYCE3A1L190 88 aa22.49■■□□□ 1.19
COL27A1-207ENST00000494090 SKAP1Q86WV1 359 aa22.49■■□□□ 1.19
COL27A1-207ENST00000494090 PLEKHH1Q9ULM0 1364 aa22.49■■□□□ 1.19
COL27A1-207ENST00000494090 UQCRHLA0A096LP55 91 aa22.49■■□□□ 1.19
COL27A1-207ENST00000494090 SMARCA5O60264 1052 aaPredicted RBP22.49■■□□□ 1.19
COL27A1-207ENST00000494090 UQCRHP07919 91 aa22.49■■□□□ 1.19
COL27A1-207ENST00000494090 PAF1Q8N7H5 531 aa22.49■■□□□ 1.19
COL27A1-207ENST00000494090 RAI14Q9P0K7 980 aa22.49■■□□□ 1.19
COL27A1-207ENST00000494090 RBM5P52756 815 aaKnown RBP eCLIP22.49■■□□□ 1.193e-7■■■□□ 16.5
COL27A1-207ENST00000494090 TBC1D2Q9BYX2 928 aa22.48■■□□□ 1.19
COL27A1-207ENST00000494090 TMOD2Q9NZR1 351 aa22.48■■□□□ 1.19
COL27A1-207ENST00000494090 UPF3BQ9BZI7 483 aaKnown RBP22.47■■□□□ 1.19
COL27A1-207ENST00000494090 LRP2BPQ9P2M1 347 aa22.47■■□□□ 1.19
COL27A1-207ENST00000494090 ADGRF5Q8IZF2 1346 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms