RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 ANP32CO43423 234 aa26.47■■□□□ 1.83
LIME1-205ENST00000480139 SULT6B1Q6IMI4 303 aa26.47■■□□□ 1.83
LIME1-205ENST00000480139 ZCRB1Q8TBF4 217 aaKnown RBP26.47■■□□□ 1.83
LIME1-205ENST00000480139 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.47■■□□□ 1.83
LIME1-205ENST00000480139 AEBP1Q8IUX7 1158 aa26.46■■□□□ 1.83
LIME1-205ENST00000480139 MARCH10Q8NA82 808 aaPredicted RBP26.45■■□□□ 1.82
LIME1-205ENST00000480139 FAM196AQ6ZSG2 479 aa26.44■■□□□ 1.82
LIME1-205ENST00000480139 EP400Q96L91 3159 aa26.44■■□□□ 1.82
LIME1-205ENST00000480139 U2SURPO15042 1029 aaKnown RBP26.43■■□□□ 1.82
LIME1-205ENST00000480139 PCDH11XQ9BZA7 1347 aa26.42■■□□□ 1.82
LIME1-205ENST00000480139 PCDH11YQ9BZA8 1340 aa26.42■■□□□ 1.82
LIME1-205ENST00000480139 SBF2Q86WG5 1849 aa26.42■■□□□ 1.82
LIME1-205ENST00000480139 SPG7Q9UQ90 795 aa26.42■■□□□ 1.82
LIME1-205ENST00000480139 SOCS7O14512 581 aa26.41■■□□□ 1.82
LIME1-205ENST00000480139 FAM182BQ5T319 152 aa26.41■■□□□ 1.82
LIME1-205ENST00000480139 HMOX1P09601 288 aa26.4■■□□□ 1.82
LIME1-205ENST00000480139 AMOTQ4VCS5 1084 aa26.39■■□□□ 1.82
LIME1-205ENST00000480139 DDX54Q8TDD1 881 aaKnown RBP26.38■■□□□ 1.81
LIME1-205ENST00000480139 U2AF1L5P0DN76 240 aaPredicted RBP26.37■■□□□ 1.81
LIME1-205ENST00000480139 U2AF1Q01081 240 aaKnown RBP eCLIP26.37■■□□□ 1.81
LIME1-205ENST00000480139 PLEKHO1Q53GL0 409 aaPredicted RBP26.37■■□□□ 1.81
LIME1-205ENST00000480139 NHSQ6T4R5 1651 aa26.37■■□□□ 1.81
LIME1-205ENST00000480139 TNS1Q9HBL0 1735 aaKnown RBP26.36■■□□□ 1.81
LIME1-205ENST00000480139 FCHSD2O94868 740 aa26.36■■□□□ 1.81
LIME1-205ENST00000480139 CCDC125Q86Z20 511 aa26.36■■□□□ 1.81
LIME1-205ENST00000480139 UPF1Q92900 1129 aaKnown RBP eCLIP26.36■■□□□ 1.81
LIME1-205ENST00000480139 RSPH6AQ9H0K4 717 aa26.36■■□□□ 1.81
LIME1-205ENST00000480139 CYP27B1O15528 508 aa26.35■■□□□ 1.81
LIME1-205ENST00000480139 DOT1LQ8TEK3 1739 aa26.34■■□□□ 1.81
LIME1-205ENST00000480139 PHKG2P15735 406 aa26.32■■□□□ 1.8
LIME1-205ENST00000480139 NKX1-1Q15270 411 aaPredicted RBP26.32■■□□□ 1.8
LIME1-205ENST00000480139 IFNL2Q8IZJ0 200 aa26.32■■□□□ 1.8
LIME1-205ENST00000480139 PRKAR2BP31323 418 aa26.3■■□□□ 1.8
LIME1-205ENST00000480139 TOGARAM1Q9Y4F4 1720 aa26.3■■□□□ 1.8
LIME1-205ENST00000480139 ZNF530Q6P9A1 599 aaPredicted RBP26.29■■□□□ 1.8
LIME1-205ENST00000480139 BCL11BQ9C0K0 894 aaPredicted RBP26.28■■□□□ 1.8
LIME1-205ENST00000480139 PNNQ9H307 717 aaKnown RBP26.28■■□□□ 1.8
LIME1-205ENST00000480139 TRIM37O94972 964 aa26.27■■□□□ 1.8
LIME1-205ENST00000480139 HSP90AB1P08238 724 aaKnown RBP26.27■■□□□ 1.8
LIME1-205ENST00000480139 WDR43Q15061 677 aaKnown RBP eCLIP26.27■■□□□ 1.8
LIME1-205ENST00000480139 RGPD3A6NKT7 1758 aaPredicted RBP26.26■■□□□ 1.79
LIME1-205ENST00000480139 RGPD4Q7Z3J3 1758 aa26.26■■□□□ 1.79
LIME1-205ENST00000480139 ADAMTS7Q9UKP4 1686 aa26.26■■□□□ 1.79
LIME1-205ENST00000480139 MTHFSDQ2M296 383 aaKnown RBP26.26■■□□□ 1.79
LIME1-205ENST00000480139 C1orf141Q5JVX7 400 aa26.26■■□□□ 1.79
LIME1-205ENST00000480139 SF3B2Q13435 895 aaKnown RBP26.25■■□□□ 1.79
LIME1-205ENST00000480139 AKAP4Q5JQC9 854 aa26.25■■□□□ 1.79
LIME1-205ENST00000480139 DIEXFQ68CQ4 756 aaKnown RBP26.25■■□□□ 1.79
LIME1-205ENST00000480139 GAS2L2Q8NHY3 880 aa26.25■■□□□ 1.79
LIME1-205ENST00000480139 ITGB4P16144 1822 aa26.25■■□□□ 1.79
LIME1-205ENST00000480139 SCN11AQ9UI33 1791 aa26.25■■□□□ 1.79
LIME1-205ENST00000480139 BTAF1O14981 1849 aa26.24■■□□□ 1.79
LIME1-205ENST00000480139 CCDC184Q52MB2 194 aa26.24■■□□□ 1.79
LIME1-205ENST00000480139 PHACTR3Q96KR7 559 aa26.24■■□□□ 1.79
LIME1-205ENST00000480139 PLEKHF1Q96S99 279 aa26.24■■□□□ 1.79
LIME1-205ENST00000480139 VIRMAQ69YN4 1812 aaKnown RBP26.23■■□□□ 1.79
LIME1-205ENST00000480139 DCAF5Q96JK2 942 aa26.23■■□□□ 1.79
LIME1-205ENST00000480139 KDM6AO15550 1401 aaPredicted RBP26.22■■□□□ 1.79
LIME1-205ENST00000480139 NEFMP07197 916 aa26.22■■□□□ 1.79
LIME1-205ENST00000480139 ACSBG1Q96GR2 724 aa26.22■■□□□ 1.79
LIME1-205ENST00000480139 MRS2Q9HD23 443 aa26.22■■□□□ 1.79
LIME1-205ENST00000480139 KAT6BQ8WYB5 2073 aa26.21■■□□□ 1.79
LIME1-205ENST00000480139 KCNQ2O43526 872 aa26.21■■□□□ 1.79
LIME1-205ENST00000480139 ADAMTS8Q9UP79 889 aa26.2■■□□□ 1.78
LIME1-205ENST00000480139 MAP3K5Q99683 1374 aa26.2■■□□□ 1.78
LIME1-205ENST00000480139 BAG6P46379 1132 aa26.19■■□□□ 1.78
LIME1-205ENST00000480139 PRIM1P49642 420 aaKnown RBP26.19■■□□□ 1.78
LIME1-205ENST00000480139 ERVV-2B6SEH9 535 aa26.18■■□□□ 1.78
LIME1-205ENST00000480139 PTF1AQ7RTS3 328 aa26.18■■□□□ 1.78
LIME1-205ENST00000480139 PNISRQ8TF01 805 aaKnown RBP26.18■■□□□ 1.78
LIME1-205ENST00000480139 MRC1P22897 1456 aa26.17■■□□□ 1.78
LIME1-205ENST00000480139 MAPK8IP3Q9UPT6 1336 aa26.17■■□□□ 1.78
LIME1-205ENST00000480139 APBA3O96018 575 aa26.17■■□□□ 1.78
LIME1-205ENST00000480139 DLG5Q8TDM6 1919 aa26.17■■□□□ 1.78
LIME1-205ENST00000480139 GNAT3A8MTJ3 354 aa26.16■■□□□ 1.78
LIME1-205ENST00000480139 PLSCR1O15162 318 aa26.16■■□□□ 1.78
LIME1-205ENST00000480139 SYTL4Q96C24 671 aaPredicted RBP26.16■■□□□ 1.78
LIME1-205ENST00000480139 MPRIPQ6WCQ1 1025 aa26.15■■□□□ 1.78
LIME1-205ENST00000480139 RREB1Q92766 1687 aa26.15■■□□□ 1.78
LIME1-205ENST00000480139 RUNDC1Q96C34 613 aa26.14■■□□□ 1.78
LIME1-205ENST00000480139 CCER2I3L3R5 266 aa26.13■■□□□ 1.77
LIME1-205ENST00000480139 LY75O60449 1722 aa26.13■■□□□ 1.77
LIME1-205ENST00000480139 RNMTO43148 476 aaKnown RBP26.12■■□□□ 1.77
LIME1-205ENST00000480139 HTATSF1O43719 755 aaKnown RBP26.12■■□□□ 1.77
LIME1-205ENST00000480139 NFE2L2Q16236 605 aa26.12■■□□□ 1.77
LIME1-205ENST00000480139 DEFB132Q7Z7B7 95 aa26.12■■□□□ 1.77
LIME1-205ENST00000480139 TMOD3Q9NYL9 352 aa26.12■■□□□ 1.77
LIME1-205ENST00000480139 CEMIPQ8WUJ3 1361 aa26.11■■□□□ 1.77
LIME1-205ENST00000480139 SIPA1L3O60292 1781 aaPredicted RBP26.11■■□□□ 1.77
LIME1-205ENST00000480139 CAMKK2Q96RR4 588 aa26.11■■□□□ 1.77
LIME1-205ENST00000480139 EN1Q05925 392 aaPredicted RBP26.1■■□□□ 1.77
LIME1-205ENST00000480139 PIGBQ92521 554 aa26.1■■□□□ 1.77
LIME1-205ENST00000480139 LGR6Q9HBX8 967 aa26.1■■□□□ 1.77
LIME1-205ENST00000480139 CABP4P57796 275 aa26.09■■□□□ 1.77
LIME1-205ENST00000480139 CCDC146Q8IYE0 955 aa26.09■■□□□ 1.77
LIME1-205ENST00000480139 IL17REQ8NFR9 667 aa26.08■■□□□ 1.77
LIME1-205ENST00000480139 SLC52A2Q9HAB3 445 aa26.08■■□□□ 1.77
LIME1-205ENST00000480139 PAPPAQ13219 1627 aa26.07■■□□□ 1.76
LIME1-205ENST00000480139 RTF1Q92541 710 aaKnown RBP26.07■■□□□ 1.76
LIME1-205ENST00000480139 NUP188Q5SRE5 1749 aa26.06■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms