RNA–Protein interactions for RNA: ENST00000477334.1

RBM39-231, Transcript of RNA binding motif protein 39, human

TSL 2

Gene RBM39, Length 949 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-231	ENST00000477334	ZNF784	Q8NCA9	323 aa	Predicted RBP	8.39	□□□□□ -1.07
RBM39-231	ENST00000477334	TMPRSS4	Q9NRS4	437 aa		8.39	□□□□□ -1.07
RBM39-231	ENST00000477334	ERVH48-1	M5A8F1	160 aa		8.38	□□□□□ -1.07
RBM39-231	ENST00000477334	SEPT12	Q8IYM1	358 aa		8.38	□□□□□ -1.07
RBM39-231	ENST00000477334	CCDC82	Q8N4S0	544 aa		8.38	□□□□□ -1.07
RBM39-231	ENST00000477334	AGBL1	Q96MI9	1066 aa		8.38	□□□□□ -1.07
RBM39-231	ENST00000477334	ARID3A	Q99856	593 aa		8.38	□□□□□ -1.07
RBM39-231	ENST00000477334	PPFIA3	O75145	1194 aa		8.37	□□□□□ -1.07
RBM39-231	ENST00000477334	LILRA1	O75019	489 aa		8.36	□□□□□ -1.07
RBM39-231	ENST00000477334	ADH1A	P07327	375 aa		8.36	□□□□□ -1.07
RBM39-231	ENST00000477334	RELB	Q01201	579 aa		8.36	□□□□□ -1.07
RBM39-231	ENST00000477334	ZNF592	Q92610	1267 aa		8.36	□□□□□ -1.07
RBM39-231	ENST00000477334	CCDC97	Q96F63	343 aa	Predicted RBP	8.36	□□□□□ -1.07
RBM39-231	ENST00000477334	CEP126	Q9P2H0	1117 aa		8.36	□□□□□ -1.07
RBM39-231	ENST00000477334	FIGNL2	A6NMB9	653 aa		8.35	□□□□□ -1.07
RBM39-231	ENST00000477334	MCCD1	P59942	119 aa	Predicted RBP	8.35	□□□□□ -1.07
RBM39-231	ENST00000477334	UCN2	Q96RP3	112 aa		8.35	□□□□□ -1.07
RBM39-231	ENST00000477334	PIK3CD	O00329	1044 aa		8.34	□□□□□ -1.07
RBM39-231	ENST00000477334	GIGYF1	O75420	1035 aa	Predicted RBP	8.34	□□□□□ -1.07
RBM39-231	ENST00000477334	ADD1	P35611	737 aa	Known RBP	8.34	□□□□□ -1.07
RBM39-231	ENST00000477334	CTSO	P43234	321 aa	Predicted RBP	8.34	□□□□□ -1.07
RBM39-231	ENST00000477334	PTS	Q03393	145 aa		8.34	□□□□□ -1.07
RBM39-231	ENST00000477334	TRIM52	Q96A61	297 aa		8.34	□□□□□ -1.07
RBM39-231	ENST00000477334	INSM2	Q96T92	566 aa	Predicted RBP	8.34	□□□□□ -1.07
RBM39-231	ENST00000477334	LOR	P23490	312 aa	Predicted RBP	8.33	□□□□□ -1.08
RBM39-231	ENST00000477334	SLFNL1	Q499Z3	407 aa		8.33	□□□□□ -1.08
RBM39-231	ENST00000477334	ZSCAN1	Q8NBB4	408 aa		8.33	□□□□□ -1.08
RBM39-231	ENST00000477334	ZNF395	Q9H8N7	513 aa	Predicted RBP	8.33	□□□□□ -1.08
RBM39-231	ENST00000477334	POLM	Q9NP87	494 aa	Predicted RBP	8.33	□□□□□ -1.08
RBM39-231	ENST00000477334	SERPINA10	Q9UK55	444 aa		8.33	□□□□□ -1.08
RBM39-231	ENST00000477334	CCDC125	Q86Z20	511 aa		8.32	□□□□□ -1.08
RBM39-231	ENST00000477334	KDF1	Q8NAX2	398 aa	Predicted RBP	8.32	□□□□□ -1.08
RBM39-231	ENST00000477334	RNF217	Q8TC41	542 aa		8.32	□□□□□ -1.08
RBM39-231	ENST00000477334	CYLD	Q9NQC7	956 aa		8.32	□□□□□ -1.08
RBM39-231	ENST00000477334	PTGIR	P43119	386 aa		8.31	□□□□□ -1.08
RBM39-231	ENST00000477334	TBC1D9	Q6ZT07	1266 aa		8.31	□□□□□ -1.08
RBM39-231	ENST00000477334	RNF135	Q8IUD6	432 aa		8.31	□□□□□ -1.08
RBM39-231	ENST00000477334	PPP1R12C	Q9BZL4	782 aa		8.31	□□□□□ -1.08
RBM39-231	ENST00000477334	PALM3	A6NDB9	673 aa	Predicted RBP	8.3	□□□□□ -1.08
RBM39-231	ENST00000477334	FAM181B	A6NEQ2	426 aa		8.3	□□□□□ -1.08
RBM39-231	ENST00000477334	SKI	P12755	728 aa		8.3	□□□□□ -1.08
RBM39-231	ENST00000477334	RNF20	Q5VTR2	975 aa		8.3	□□□□□ -1.08
RBM39-231	ENST00000477334	PHTF2	Q8N3S3	785 aa		8.3	□□□□□ -1.08
RBM39-231	ENST00000477334	CCDC155	Q8N6L0	562 aa		8.3	□□□□□ -1.08
RBM39-231	ENST00000477334	TFIP11	Q9UBB9	837 aa	Known RBP	8.3	□□□□□ -1.08
RBM39-231	ENST00000477334	SLC35F4	A4IF30	521 aa		8.29	□□□□□ -1.08
RBM39-231	ENST00000477334	RFX1	P22670	979 aa		8.29	□□□□□ -1.08
RBM39-231	ENST00000477334	TSGA10IP	Q3SY00	556 aa		8.29	□□□□□ -1.08
RBM39-231	ENST00000477334	FOXD4L5	Q5VV16	416 aa	Predicted RBP	8.29	□□□□□ -1.08
RBM39-231	ENST00000477334	ATP9B	O43861	1147 aa		8.28	□□□□□ -1.08
RBM39-231	ENST00000477334	CCDC85A	Q96PX6	553 aa	Predicted RBP	8.28	□□□□□ -1.08
RBM39-231	ENST00000477334	ATP5J2-PTCD1	G3V325	749 aa		8.27	□□□□□ -1.09
RBM39-231	ENST00000477334	LMOD1	P29536	600 aa	Predicted RBP	8.27	□□□□□ -1.09
RBM39-231	ENST00000477334	ERVK-9	P63128	1117 aa		8.27	□□□□□ -1.09
RBM39-231	ENST00000477334	CFAP70	Q5T0N1	1121 aa		8.27	□□□□□ -1.09
RBM39-231	ENST00000477334	DEPDC4	Q8N2C3	294 aa		8.27	□□□□□ -1.09
RBM39-231	ENST00000477334	PLPP7	Q8NBV4	271 aa		8.27	□□□□□ -1.09
RBM39-231	ENST00000477334	NANOS1	Q8WY41	292 aa	Known RBP	8.27	□□□□□ -1.09
RBM39-231	ENST00000477334	SENP3-EIF4A1	A0A087X0R7	540 aa		8.26	□□□□□ -1.09
RBM39-231	ENST00000477334	ITGA6	P23229	1130 aa		8.26	□□□□□ -1.09
RBM39-231	ENST00000477334	CC2D2B	Q6DHV5	1058 aa		8.26	□□□□□ -1.09
RBM39-231	ENST00000477334	NFATC2IP	Q8NCF5	419 aa		8.26	□□□□□ -1.09
RBM39-231	ENST00000477334	MAFB	Q9Y5Q3	323 aa	Predicted RBP	8.26	□□□□□ -1.09
RBM39-231	ENST00000477334	USP17L5	A8MUK1	530 aa		8.25	□□□□□ -1.09
RBM39-231	ENST00000477334	RNF144A	P50876	292 aa	Predicted RBP	8.25	□□□□□ -1.09
RBM39-231	ENST00000477334	LYSMD3	Q7Z3D4	306 aa		8.25	□□□□□ -1.09
RBM39-231	ENST00000477334	GPR161	Q8N6U8	529 aa	Known RBP	8.25	□□□□□ -1.09
RBM39-231	ENST00000477334	CDCA7	Q9BWT1	371 aa	Predicted RBP	8.25	□□□□□ -1.09
RBM39-231	ENST00000477334	DOLK	Q9UPQ8	538 aa		8.25	□□□□□ -1.09
RBM39-231	ENST00000477334	PCDHB11	Q9Y5F2	797 aa		8.25	□□□□□ -1.09
RBM39-231	ENST00000477334	USP17L3	A6NCW0	530 aa		8.24	□□□□□ -1.09
RBM39-231	ENST00000477334	USP17L4	A6NCW7	530 aa		8.24	□□□□□ -1.09
RBM39-231	ENST00000477334	NCOA4	Q13772	614 aa		8.24	□□□□□ -1.09
RBM39-231	ENST00000477334	MAP7D1	Q3KQU3	841 aa		8.24	□□□□□ -1.09
RBM39-231	ENST00000477334	OXLD1	Q5BKU9	147 aa		8.24	□□□□□ -1.09
RBM39-231	ENST00000477334	USP17L2	Q6R6M4	530 aa		8.24	□□□□□ -1.09
RBM39-231	ENST00000477334	USP17L1	Q7RTZ2	530 aa		8.24	□□□□□ -1.09
RBM39-231	ENST00000477334	CHIC2	Q9UKJ5	165 aa		8.24	□□□□□ -1.09
RBM39-231	ENST00000477334	GPC1	P35052	558 aa		8.23	□□□□□ -1.09
RBM39-231	ENST00000477334	SCTR	P47872	440 aa		8.23	□□□□□ -1.09
RBM39-231	ENST00000477334	KRT76	Q01546	638 aa		8.23	□□□□□ -1.09
RBM39-231	ENST00000477334	CYP2U1	Q7Z449	544 aa		8.23	□□□□□ -1.09
RBM39-231	ENST00000477334	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	8.22	□□□□□ -1.09
RBM39-231	ENST00000477334		A0A1W2PRU2	124 aa		8.22	□□□□□ -1.09
RBM39-231	ENST00000477334	MEN1	O00255	615 aa		8.22	□□□□□ -1.09
RBM39-231	ENST00000477334	CDCA8	Q53HL2	280 aa		8.22	□□□□□ -1.09
RBM39-231	ENST00000477334	CDC14C	A4D256	554 aa		8.21	□□□□□ -1.1
RBM39-231	ENST00000477334	EML3	Q32P44	896 aa		8.21	□□□□□ -1.1
RBM39-231	ENST00000477334	SV2A	Q7L0J3	742 aa		8.21	□□□□□ -1.1
RBM39-231	ENST00000477334	PRICKLE2	Q7Z3G6	844 aa		8.21	□□□□□ -1.1
RBM39-231	ENST00000477334	PLEKHM2	Q8IWE5	1019 aa		8.21	□□□□□ -1.1
RBM39-231	ENST00000477334	CNTNAP3B	Q96NU0	1288 aa		8.21	□□□□□ -1.1
RBM39-231	ENST00000477334	COL25A1	Q9BXS0	654 aa	Predicted RBP	8.21	□□□□□ -1.1
RBM39-231	ENST00000477334	CNTNAP3	Q9BZ76	1288 aa		8.21	□□□□□ -1.1
RBM39-231	ENST00000477334	VWA5B2	Q8N398	1253 aa		8.2	□□□□□ -1.1
RBM39-231	ENST00000477334	OSBPL3	Q9H4L5	887 aa		8.2	□□□□□ -1.1
RBM39-231	ENST00000477334	ESF1	Q9H501	851 aa	Known RBP	8.2	□□□□□ -1.1
RBM39-231	ENST00000477334	MKRN1	Q9UHC7	482 aa	Known RBP	8.2	□□□□□ -1.1
RBM39-231	ENST00000477334	LZTS3	O60299	673 aa	Predicted RBP	8.19	□□□□□ -1.1
RBM39-231	ENST00000477334	USP4	Q13107	963 aa		8.19	□□□□□ -1.1

Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms