RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 DOT1LQ8TEK3 1739 aa9.82□□□□□ -0.84
HDAC1-204ENST00000471488 IGSF1Q8N6C5 1336 aa9.82□□□□□ -0.84
HDAC1-204ENST00000471488 ANKRD36BQ8N2N9 1353 aa9.81□□□□□ -0.84
HDAC1-204ENST00000471488 AMPHP49418 695 aa9.81□□□□□ -0.84
HDAC1-204ENST00000471488 APLP1P51693 650 aa9.81□□□□□ -0.84
HDAC1-204ENST00000471488 AK7Q96M32 723 aa9.81□□□□□ -0.84
HDAC1-204ENST00000471488 CD2APQ9Y5K6 639 aa9.81□□□□□ -0.84
HDAC1-204ENST00000471488 ROCK2O75116 1388 aaKnown RBP9.8□□□□□ -0.84
HDAC1-204ENST00000471488 QSER1Q2KHR3 1735 aa9.8□□□□□ -0.84
HDAC1-204ENST00000471488 SMIM5Q71RC9 77 aa9.8□□□□□ -0.84
HDAC1-204ENST00000471488 USHBP1Q8N6Y0 703 aa9.8□□□□□ -0.84
HDAC1-204ENST00000471488 ZCRB1Q8TBF4 217 aaKnown RBP9.8□□□□□ -0.84
HDAC1-204ENST00000471488 NEUROD1Q13562 356 aa9.79□□□□□ -0.84
HDAC1-204ENST00000471488 MPRIPQ6WCQ1 1025 aa9.79□□□□□ -0.84
HDAC1-204ENST00000471488 C16orf71Q8IYS4 520 aaPredicted RBP9.79□□□□□ -0.84
HDAC1-204ENST00000471488 KIF3CO14782 793 aa9.78□□□□□ -0.84
HDAC1-204ENST00000471488 FBLN1P23142 703 aa9.78□□□□□ -0.84
HDAC1-204ENST00000471488 HTRA3P83110 453 aa9.78□□□□□ -0.84
HDAC1-204ENST00000471488 FLAD1Q8NFF5 587 aa9.78□□□□□ -0.84
HDAC1-204ENST00000471488 IP6K1Q92551 441 aa9.78□□□□□ -0.84
HDAC1-204ENST00000471488 L3MBTL2Q969R5 705 aa9.78□□□□□ -0.84
HDAC1-204ENST00000471488 ADCY9O60503 1353 aa9.77□□□□□ -0.84
HDAC1-204ENST00000471488 RAPGEF4Q8WZA2 1011 aa9.77□□□□□ -0.85
HDAC1-204ENST00000471488 SLC12A5Q9H2X9 1139 aa9.77□□□□□ -0.85
HDAC1-204ENST00000471488 BCS1LQ9Y276 419 aa9.77□□□□□ -0.85
HDAC1-204ENST00000471488 NSD2O96028 1365 aa9.76□□□□□ -0.85
HDAC1-204ENST00000471488 USP31Q70CQ4 1352 aa9.76□□□□□ -0.85
HDAC1-204ENST00000471488 COL13A1Q5TAT6 717 aaPredicted RBP9.76□□□□□ -0.85
HDAC1-204ENST00000471488 ARHGAP27Q6ZUM4 889 aa9.76□□□□□ -0.85
HDAC1-204ENST00000471488 TNS4Q8IZW8 715 aa9.76□□□□□ -0.85
HDAC1-204ENST00000471488 COG3Q96JB2 828 aa9.76□□□□□ -0.85
HDAC1-204ENST00000471488 TERF2IPQ9NYB0 399 aa9.76□□□□□ -0.85
HDAC1-204ENST00000471488 LY75O60449 1722 aa9.76□□□□□ -0.85
HDAC1-204ENST00000471488 COL24A1Q17RW2 1714 aa9.76□□□□□ -0.85
HDAC1-204ENST00000471488 MON2Q7Z3U7 1717 aa9.76□□□□□ -0.85
HDAC1-204ENST00000471488 PALLDQ8WX93 1383 aa9.75□□□□□ -0.85
HDAC1-204ENST00000471488 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.75□□□□□ -0.85
HDAC1-204ENST00000471488 TOMM70O94826 608 aa9.75□□□□□ -0.85
HDAC1-204ENST00000471488 TATP17735 454 aaPredicted RBP9.75□□□□□ -0.85
HDAC1-204ENST00000471488 HOXC9P31274 260 aa9.75□□□□□ -0.85
HDAC1-204ENST00000471488 NMRK2Q9NPI5 230 aa9.75□□□□□ -0.85
HDAC1-204ENST00000471488 SBNO2Q9Y2G9 1366 aa9.75□□□□□ -0.85
HDAC1-204ENST00000471488 C5P01031 1676 aa9.74□□□□□ -0.85
HDAC1-204ENST00000471488 MEGF6O75095 1541 aa9.74□□□□□ -0.85
HDAC1-204ENST00000471488 MAP3K19Q56UN5 1328 aa9.74□□□□□ -0.85
HDAC1-204ENST00000471488 A0A0G2JLW4 131 aa9.73□□□□□ -0.85
HDAC1-204ENST00000471488 RRS1Q15050 365 aaKnown RBP9.73□□□□□ -0.85
HDAC1-204ENST00000471488 AMIGO3Q86WK7 504 aa9.73□□□□□ -0.85
HDAC1-204ENST00000471488 SIN3AQ96ST3 1273 aa9.73□□□□□ -0.85
HDAC1-204ENST00000471488 RGPD2P0DJD1 1756 aa9.73□□□□□ -0.85
HDAC1-204ENST00000471488 EDC4Q6P2E9 1401 aaKnown RBP9.73□□□□□ -0.85
HDAC1-204ENST00000471488 GNPATO15228 680 aa9.72□□□□□ -0.85
HDAC1-204ENST00000471488 NBPF6Q5VWK0 638 aa9.72□□□□□ -0.85
HDAC1-204ENST00000471488 DNAJC5GQ8N7S2 189 aa9.72□□□□□ -0.85
HDAC1-204ENST00000471488 NBPF4Q96M43 638 aa9.72□□□□□ -0.85
HDAC1-204ENST00000471488 CARD11Q9BXL7 1154 aa9.72□□□□□ -0.85
HDAC1-204ENST00000471488 A0A1W2PP64 1363 aa9.72□□□□□ -0.85
HDAC1-204ENST00000471488 SMG6Q86US8 1419 aaKnown RBP9.72□□□□□ -0.85
HDAC1-204ENST00000471488 FAM208AQ9UK61 1670 aaKnown RBP9.71□□□□□ -0.85
HDAC1-204ENST00000471488 FCHSD2O94868 740 aa9.71□□□□□ -0.86
HDAC1-204ENST00000471488 MMP10P09238 476 aa9.71□□□□□ -0.86
HDAC1-204ENST00000471488 HMGB2P26583 209 aaKnown RBP9.71□□□□□ -0.86
HDAC1-204ENST00000471488 SMARCC1Q92922 1105 aaPredicted RBP9.71□□□□□ -0.86
HDAC1-204ENST00000471488 PCDH11XQ9BZA7 1347 aa9.71□□□□□ -0.86
HDAC1-204ENST00000471488 PCDH11YQ9BZA8 1340 aa9.71□□□□□ -0.86
HDAC1-204ENST00000471488 CD163L1Q9NR16 1453 aa9.71□□□□□ -0.86
HDAC1-204ENST00000471488 C4BP0C0L5 1744 aa9.7□□□□□ -0.86
HDAC1-204ENST00000471488 KLRG1Q96E93 195 aa9.7□□□□□ -0.86
HDAC1-204ENST00000471488 PPM1GO15355 546 aaPredicted RBP9.69□□□□□ -0.86
HDAC1-204ENST00000471488 ATP6V1AP38606 617 aa9.69□□□□□ -0.86
HDAC1-204ENST00000471488 C9orf131Q5VYM1 1079 aa9.69□□□□□ -0.86
HDAC1-204ENST00000471488 LINC00116Q8NCU8 138 aa9.69□□□□□ -0.86
HDAC1-204ENST00000471488 WDR90Q96KV7 1748 aa9.69□□□□□ -0.86
HDAC1-204ENST00000471488 NSD3Q9BZ95 1437 aa9.69□□□□□ -0.86
HDAC1-204ENST00000471488 GGNBP2Q9H3C7 697 aa9.69□□□□□ -0.86
HDAC1-204ENST00000471488 USP54Q70EL1 1684 aa9.68□□□□□ -0.86
HDAC1-204ENST00000471488 DPEP1P16444 411 aa9.68□□□□□ -0.86
HDAC1-204ENST00000471488 SSFA2P28290 1259 aa9.68□□□□□ -0.86
HDAC1-204ENST00000471488 RBM46Q8TBY0 533 aaKnown RBP9.68□□□□□ -0.86
HDAC1-204ENST00000471488 PIGBQ92521 554 aa9.68□□□□□ -0.86
HDAC1-204ENST00000471488 RRAGCQ9HB90 399 aa9.68□□□□□ -0.86
HDAC1-204ENST00000471488 TMOD3Q9NYL9 352 aa9.68□□□□□ -0.86
HDAC1-204ENST00000471488 TAF1LQ8IZX4 1826 aa9.68□□□□□ -0.86
HDAC1-204ENST00000471488 N4BP2Q86UW6 1770 aaPredicted RBP9.68□□□□□ -0.86
HDAC1-204ENST00000471488 CGNL1Q0VF96 1302 aa9.67□□□□□ -0.86
HDAC1-204ENST00000471488 LOC102724428A0A0B4J2F2 783 aa9.67□□□□□ -0.86
HDAC1-204ENST00000471488 PRELPP51888 382 aa9.67□□□□□ -0.86
HDAC1-204ENST00000471488 SIK1P57059 783 aa9.67□□□□□ -0.86
HDAC1-204ENST00000471488 RBM42Q9BTD8 480 aaKnown RBP9.67□□□□□ -0.86
HDAC1-204ENST00000471488 CCDC87Q9NVE4 849 aa9.67□□□□□ -0.86
HDAC1-204ENST00000471488 RNF181Q9P0P0 153 aa9.67□□□□□ -0.86
HDAC1-204ENST00000471488 PXDNLA1KZ92 1463 aa9.66□□□□□ -0.86
HDAC1-204ENST00000471488 KDM2BQ8NHM5 1336 aa9.66□□□□□ -0.86
HDAC1-204ENST00000471488 CYP27B1O15528 508 aa9.66□□□□□ -0.86
HDAC1-204ENST00000471488 TMF1P82094 1093 aa9.66□□□□□ -0.86
HDAC1-204ENST00000471488 HSP90AB2PQ58FF8 381 aa9.66□□□□□ -0.86
HDAC1-204ENST00000471488 TRAPPC3LQ5T215 181 aa9.66□□□□□ -0.86
HDAC1-204ENST00000471488 ASAP1Q9ULH1 1129 aa9.66□□□□□ -0.86
HDAC1-204ENST00000471488 RTCBQ9Y3I0 505 aaKnown RBP9.66□□□□□ -0.86
HDAC1-204ENST00000471488 PARP3Q9Y6F1 533 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms