RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 FMNL2Q96PY5 1086 aa12.93□□□□□ -0.34
CHD3-208ENST00000470531 LRRCC1Q9C099 1032 aa12.93□□□□□ -0.34
CHD3-208ENST00000470531 RBSNQ9H1K0 784 aa12.93□□□□□ -0.34
CHD3-208ENST00000470531 AK9Q5TCS8 1911 aa12.93□□□□□ -0.34
CHD3-208ENST00000470531 POLR3AO14802 1390 aaPredicted RBP12.93□□□□□ -0.34
CHD3-208ENST00000470531 SYNMO15061 1565 aa12.93□□□□□ -0.34
CHD3-208ENST00000470531 CCDC83Q8IWF9 413 aa12.93□□□□□ -0.34
CHD3-208ENST00000470531 BICD2Q8TD16 824 aa12.93□□□□□ -0.34
CHD3-208ENST00000470531 TTC12Q9H892 705 aaPredicted RBP12.93□□□□□ -0.34
CHD3-208ENST00000470531 PTMSP20962 102 aa12.92□□□□□ -0.34
CHD3-208ENST00000470531 CEBPAP49715 358 aaPredicted RBP12.92□□□□□ -0.34
CHD3-208ENST00000470531 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.92□□□□□ -0.34
CHD3-208ENST00000470531 TPM2P07951 284 aa12.92□□□□□ -0.34
CHD3-208ENST00000470531 IFIT2P09913 472 aaKnown RBP12.92□□□□□ -0.34
CHD3-208ENST00000470531 CSB-PGBD3P0DP91 1061 aa12.92□□□□□ -0.34
CHD3-208ENST00000470531 GSPT1P15170 499 aaKnown RBP12.92□□□□□ -0.34
CHD3-208ENST00000470531 ERVK-7P63135 1459 aa12.92□□□□□ -0.34
CHD3-208ENST00000470531 TFIP11Q9UBB9 837 aaKnown RBP12.92□□□□□ -0.34
CHD3-208ENST00000470531 HCLS1P14317 486 aaPredicted RBP12.91□□□□□ -0.34
CHD3-208ENST00000470531 TTC22Q5TAA0 569 aa12.91□□□□□ -0.34
CHD3-208ENST00000470531 TMX3Q96JJ7 454 aa12.91□□□□□ -0.34
CHD3-208ENST00000470531 TSPY26PQ9H489 355 aa12.91□□□□□ -0.34
CHD3-208ENST00000470531 ABCA8O94911 1581 aa12.91□□□□□ -0.34
CHD3-208ENST00000470531 PIP4K2AP48426 406 aaPredicted RBP12.91□□□□□ -0.34
CHD3-208ENST00000470531 KIF2CQ99661 725 aa12.91□□□□□ -0.34
CHD3-208ENST00000470531 IFT57Q9NWB7 429 aa12.91□□□□□ -0.34
CHD3-208ENST00000470531 ADGRL1O94910 1474 aa12.91□□□□□ -0.34
CHD3-208ENST00000470531 CKAP2LQ8IYA6 745 aa12.91□□□□□ -0.34
CHD3-208ENST00000470531 ABTB2Q8N961 1025 aa12.91□□□□□ -0.34
CHD3-208ENST00000470531 NECAB1Q8N987 351 aa12.91□□□□□ -0.34
CHD3-208ENST00000470531 FAM173BQ6P4H8 233 aa12.9□□□□□ -0.34
CHD3-208ENST00000470531 DDX11Q96FC9 970 aa12.9□□□□□ -0.34
CHD3-208ENST00000470531 PDCL3Q9H2J4 239 aa12.9□□□□□ -0.34
CHD3-208ENST00000470531 RBM25P49756 843 aaKnown RBP12.9□□□□□ -0.34
CHD3-208ENST00000470531 CBX1P83916 185 aa12.9□□□□□ -0.34
CHD3-208ENST00000470531 GIMAP6Q6P9H5 292 aa12.9□□□□□ -0.34
CHD3-208ENST00000470531 CREBRFQ8IUR6 639 aa12.9□□□□□ -0.34
CHD3-208ENST00000470531 CFAP44Q96MT7 982 aa12.9□□□□□ -0.34
CHD3-208ENST00000470531 CCDC85AQ96PX6 553 aaPredicted RBP12.9□□□□□ -0.34
CHD3-208ENST00000470531 H3BQV1 296 aa12.89□□□□□ -0.35
CHD3-208ENST00000470531 MYL6BP14649 208 aa12.89□□□□□ -0.35
CHD3-208ENST00000470531 CASTP20810 708 aaKnown RBP12.89□□□□□ -0.35
CHD3-208ENST00000470531 IFFO2Q5TF58 517 aa12.89□□□□□ -0.35
CHD3-208ENST00000470531 SIRT2Q8IXJ6 389 aa12.89□□□□□ -0.35
CHD3-208ENST00000470531 SPDYE4A6NLX3 237 aa12.89□□□□□ -0.35
CHD3-208ENST00000470531 MX1P20591 662 aa12.89□□□□□ -0.35
CHD3-208ENST00000470531 JAKMIP1Q96N16 626 aaKnown RBP12.89□□□□□ -0.35
CHD3-208ENST00000470531 CCDC61Q9Y6R9 512 aa12.89□□□□□ -0.35
CHD3-208ENST00000470531 ARHGEF5Q12774 1597 aa12.89□□□□□ -0.35
CHD3-208ENST00000470531 CDC42BPBQ9Y5S2 1711 aa12.89□□□□□ -0.35
CHD3-208ENST00000470531 NPC1L1Q9UHC9 1359 aa12.89□□□□□ -0.35
CHD3-208ENST00000470531 FANCAO15360 1455 aa12.89□□□□□ -0.35
CHD3-208ENST00000470531 DDIT3P35638 169 aa12.89□□□□□ -0.35
CHD3-208ENST00000470531 CIZ1Q9ULV3 898 aaPredicted RBP12.89□□□□□ -0.35
CHD3-208ENST00000470531 CT47B1P0C2W7 299 aaPredicted RBP12.88□□□□□ -0.35
CHD3-208ENST00000470531 ALDH1L2Q3SY69 923 aa12.88□□□□□ -0.35
CHD3-208ENST00000470531 MADDQ8WXG6 1647 aa12.88□□□□□ -0.35
CHD3-208ENST00000470531 PRPF40BQ6NWY9 871 aaKnown RBP12.88□□□□□ -0.35
CHD3-208ENST00000470531 SNX21Q969T3 373 aa12.88□□□□□ -0.35
CHD3-208ENST00000470531 DNAJC2Q99543 621 aaKnown RBP12.88□□□□□ -0.35
CHD3-208ENST00000470531 CCDC8Q9H0W5 538 aaPredicted RBP12.88□□□□□ -0.35
CHD3-208ENST00000470531 NSFL1CQ9UNZ2 370 aaKnown RBP12.88□□□□□ -0.35
CHD3-208ENST00000470531 TRHP20396 242 aaPredicted RBP12.88□□□□□ -0.35
CHD3-208ENST00000470531 KLHL40Q2TBA0 621 aa12.88□□□□□ -0.35
CHD3-208ENST00000470531 OSCARQ8IYS5 282 aa12.88□□□□□ -0.35
CHD3-208ENST00000470531 NEUROD6Q96NK8 337 aa12.88□□□□□ -0.35
CHD3-208ENST00000470531 CNPY2Q9Y2B0 182 aa12.88□□□□□ -0.35
CHD3-208ENST00000470531 TAF7Q15545 349 aaPredicted RBP12.87□□□□□ -0.35
CHD3-208ENST00000470531 PTPRTO14522 1441 aa12.87□□□□□ -0.35
CHD3-208ENST00000470531 KDM5AP29375 1690 aaKnown RBP12.87□□□□□ -0.35
CHD3-208ENST00000470531 MYOM1P52179 1685 aa12.87□□□□□ -0.35
CHD3-208ENST00000470531 LAMC1P11047 1609 aa12.87□□□□□ -0.35
CHD3-208ENST00000470531 GADD45BO75293 160 aaPredicted RBP12.87□□□□□ -0.35
CHD3-208ENST00000470531 CHMP4CQ96CF2 233 aa12.87□□□□□ -0.35
CHD3-208ENST00000470531 OFD1O75665 1012 aa12.86□□□□□ -0.35
CHD3-208ENST00000470531 PDE1AP54750 535 aa12.86□□□□□ -0.35
CHD3-208ENST00000470531 FAM184AQ8NB25 1140 aa12.86□□□□□ -0.35
CHD3-208ENST00000470531 PHF23Q9BUL5 403 aaPredicted RBP12.86□□□□□ -0.35
CHD3-208ENST00000470531 PLCH2O75038 1416 aa12.86□□□□□ -0.35
CHD3-208ENST00000470531 PHF14O94880 888 aa12.86□□□□□ -0.35
CHD3-208ENST00000470531 GUCY1B3Q02153 619 aa12.86□□□□□ -0.35
CHD3-208ENST00000470531 CEP85Q6P2H3 762 aa12.86□□□□□ -0.35
CHD3-208ENST00000470531 TTC37Q6PGP7 1564 aa12.86□□□□□ -0.35
CHD3-208ENST00000470531 FSD1Q9BTV5 496 aa12.86□□□□□ -0.35
CHD3-208ENST00000470531 USP26Q9BXU7 913 aa12.86□□□□□ -0.35
CHD3-208ENST00000470531 TRIM5Q9C035 493 aa12.86□□□□□ -0.35
CHD3-208ENST00000470531 BOLA2Q9H3K6 86 aa12.86□□□□□ -0.35
CHD3-208ENST00000470531 PALD1Q9ULE6 856 aa12.86□□□□□ -0.35
CHD3-208ENST00000470531 ISY1Q9ULR0 285 aaKnown RBP12.86□□□□□ -0.35
CHD3-208ENST00000470531 MAST1Q9Y2H9 1570 aa12.86□□□□□ -0.35
CHD3-208ENST00000470531 ZKSCAN1P17029 563 aaPredicted RBP12.86□□□□□ -0.35
CHD3-208ENST00000470531 RPAP2Q8IXW5 612 aaPredicted RBP12.86□□□□□ -0.35
CHD3-208ENST00000470531 LRRC2Q9BYS8 371 aa12.86□□□□□ -0.35
CHD3-208ENST00000470531 MPRIPQ6WCQ1 1025 aa12.85□□□□□ -0.35
CHD3-208ENST00000470531 CHMP4AQ9BY43 222 aa12.85□□□□□ -0.35
CHD3-208ENST00000470531 TMEM63CQ9P1W3 806 aa12.85□□□□□ -0.35
CHD3-208ENST00000470531 PA2G4Q9UQ80 394 aaKnown RBP12.85□□□□□ -0.35
CHD3-208ENST00000470531 ATP10AO60312 1499 aa12.85□□□□□ -0.35
CHD3-208ENST00000470531 ANKRD36BQ8N2N9 1353 aa12.85□□□□□ -0.35
CHD3-208ENST00000470531 FLIIQ13045 1269 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms