RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 OVOS2Q6IE36 1432 aa12.34□□□□□ -0.43
HDAC3-205ENST00000469550 TTC21AQ8NDW8 1320 aa12.34□□□□□ -0.43
HDAC3-205ENST00000469550 APBA3O96018 575 aa12.34□□□□□ -0.43
HDAC3-205ENST00000469550 R3HDM1Q15032 1099 aaKnown RBP12.34□□□□□ -0.43
HDAC3-205ENST00000469550 C20orf194Q5TEA3 1177 aa12.34□□□□□ -0.43
HDAC3-205ENST00000469550 ZNF692Q9BU19 519 aaPredicted RBP12.34□□□□□ -0.43
HDAC3-205ENST00000469550 PANK3Q9H999 370 aa12.34□□□□□ -0.43
HDAC3-205ENST00000469550 RGPD5Q99666 1765 aa12.34□□□□□ -0.43
HDAC3-205ENST00000469550 TMF1P82094 1093 aa12.34□□□□□ -0.43
HDAC3-205ENST00000469550 TTC21BQ7Z4L5 1316 aa12.33□□□□□ -0.44
HDAC3-205ENST00000469550 CC2D1BQ5T0F9 858 aaKnown RBP12.33□□□□□ -0.44
HDAC3-205ENST00000469550 SKAP1Q86WV1 359 aa12.33□□□□□ -0.44
HDAC3-205ENST00000469550 WDR17Q8IZU2 1322 aa12.32□□□□□ -0.44
HDAC3-205ENST00000469550 FAM43AQ8N2R8 423 aa12.32□□□□□ -0.44
HDAC3-205ENST00000469550 KCNH5Q8NCM2 988 aa12.32□□□□□ -0.44
HDAC3-205ENST00000469550 ADAMTS8Q9UP79 889 aa12.32□□□□□ -0.44
HDAC3-205ENST00000469550 GOLGA2Q08379 1002 aa12.32□□□□□ -0.44
HDAC3-205ENST00000469550 ARHGEF25Q86VW2 580 aa12.32□□□□□ -0.44
HDAC3-205ENST00000469550 SLC4A3P48751 1232 aa12.31□□□□□ -0.44
HDAC3-205ENST00000469550 TRMT2AQ8IZ69 625 aaKnown RBP12.31□□□□□ -0.44
HDAC3-205ENST00000469550 UBE2Q2Q8WVN8 375 aa12.31□□□□□ -0.44
HDAC3-205ENST00000469550 CDCA7Q9BWT1 371 aaPredicted RBP12.31□□□□□ -0.44
HDAC3-205ENST00000469550 USP31Q70CQ4 1352 aa12.31□□□□□ -0.44
HDAC3-205ENST00000469550 CD163L1Q9NR16 1453 aa12.29□□□□□ -0.44
HDAC3-205ENST00000469550 CASZ1Q86V15 1759 aa12.29□□□□□ -0.44
HDAC3-205ENST00000469550 FRAT2O75474 233 aaPredicted RBP12.29□□□□□ -0.44
HDAC3-205ENST00000469550 SLFN5Q08AF3 891 aa12.29□□□□□ -0.44
HDAC3-205ENST00000469550 RSPH6AQ9H0K4 717 aa12.29□□□□□ -0.44
HDAC3-205ENST00000469550 PLSCR1O15162 318 aa12.29□□□□□ -0.44
HDAC3-205ENST00000469550 PPP2R1AP30153 589 aa12.29□□□□□ -0.44
HDAC3-205ENST00000469550 DDB1Q16531 1140 aa12.29□□□□□ -0.44
HDAC3-205ENST00000469550 NBPF14Q5TI25 921 aa12.29□□□□□ -0.44
HDAC3-205ENST00000469550 TOM1L2Q6ZVM7 507 aa12.29□□□□□ -0.44
HDAC3-205ENST00000469550 CARD10Q9BWT7 1032 aa12.29□□□□□ -0.44
HDAC3-205ENST00000469550 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.29□□□□□ -0.44
HDAC3-205ENST00000469550 AXIN2Q9Y2T1 843 aa12.29□□□□□ -0.44
HDAC3-205ENST00000469550 LTN1O94822 1766 aa12.28□□□□□ -0.44
HDAC3-205ENST00000469550 WDR43Q15061 677 aaKnown RBP eCLIP12.28□□□□□ -0.44
HDAC3-205ENST00000469550 NGEFQ8N5V2 710 aa12.28□□□□□ -0.44
HDAC3-205ENST00000469550 NPC1L1Q9UHC9 1359 aa12.28□□□□□ -0.44
HDAC3-205ENST00000469550 TNS2Q63HR2 1409 aa12.27□□□□□ -0.45
HDAC3-205ENST00000469550 VIRMAQ69YN4 1812 aaKnown RBP12.27□□□□□ -0.45
HDAC3-205ENST00000469550 BCL11BQ9C0K0 894 aaPredicted RBP12.27□□□□□ -0.45
HDAC3-205ENST00000469550 NHSQ6T4R5 1651 aa12.27□□□□□ -0.45
HDAC3-205ENST00000469550 NINLQ9Y2I6 1382 aa12.26□□□□□ -0.45
HDAC3-205ENST00000469550 ZBTB7CA1YPR0 619 aa12.26□□□□□ -0.45
HDAC3-205ENST00000469550 PUS7Q96PZ0 661 aaKnown RBP12.26□□□□□ -0.45
HDAC3-205ENST00000469550 AMER1Q5JTC6 1135 aaPredicted RBP12.25□□□□□ -0.45
HDAC3-205ENST00000469550 KNSTRNQ9Y448 316 aa12.25□□□□□ -0.45
HDAC3-205ENST00000469550 CDCA8Q53HL2 280 aa12.25□□□□□ -0.45
HDAC3-205ENST00000469550 MARCH10Q8NA82 808 aaPredicted RBP12.25□□□□□ -0.45
HDAC3-205ENST00000469550 FAM208AQ9UK61 1670 aaKnown RBP12.25□□□□□ -0.45
HDAC3-205ENST00000469550 EDC4Q6P2E9 1401 aaKnown RBP12.25□□□□□ -0.45
HDAC3-205ENST00000469550 MAPK8IP3Q9UPT6 1336 aa12.24□□□□□ -0.45
HDAC3-205ENST00000469550 PDE3AQ14432 1141 aa12.24□□□□□ -0.45
HDAC3-205ENST00000469550 BECN1Q14457 450 aa12.24□□□□□ -0.45
HDAC3-205ENST00000469550 CGNL1Q0VF96 1302 aa12.23□□□□□ -0.45
HDAC3-205ENST00000469550 RGS3P49796 1198 aa12.23□□□□□ -0.45
HDAC3-205ENST00000469550 AAMPQ13685 434 aa12.23□□□□□ -0.45
HDAC3-205ENST00000469550 E9PSI1 815 aa12.22□□□□□ -0.45
HDAC3-205ENST00000469550 KCNQ2O43526 872 aa12.22□□□□□ -0.45
HDAC3-205ENST00000469550 L1TD1Q5T7N2 865 aaKnown RBP12.22□□□□□ -0.45
HDAC3-205ENST00000469550 SPON1Q9HCB6 807 aa12.22□□□□□ -0.45
HDAC3-205ENST00000469550 ERBB3P21860 1342 aa12.22□□□□□ -0.45
HDAC3-205ENST00000469550 CSB-PGBD3P0DP91 1061 aa12.21□□□□□ -0.45
HDAC3-205ENST00000469550 PAPPAQ13219 1627 aa12.21□□□□□ -0.45
HDAC3-205ENST00000469550 PTF1AQ7RTS3 328 aa12.21□□□□□ -0.46
HDAC3-205ENST00000469550 HDGFL2Q7Z4V5 671 aaPredicted RBP12.21□□□□□ -0.46
HDAC3-205ENST00000469550 A0A1W2PP64 1363 aa12.21□□□□□ -0.46
HDAC3-205ENST00000469550 EXOC5O00471 708 aa12.2□□□□□ -0.46
HDAC3-205ENST00000469550 NME9Q86XW9 330 aa12.2□□□□□ -0.46
HDAC3-205ENST00000469550 PROM2Q8N271 834 aa12.2□□□□□ -0.46
HDAC3-205ENST00000469550 SOX12O15370 315 aa12.19□□□□□ -0.46
HDAC3-205ENST00000469550 BTAF1O14981 1849 aa12.19□□□□□ -0.46
HDAC3-205ENST00000469550 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.19□□□□□ -0.46
HDAC3-205ENST00000469550 TERF2IPQ9NYB0 399 aa12.19□□□□□ -0.46
HDAC3-205ENST00000469550 IGHDP01880 384 aa12.18□□□□□ -0.46
HDAC3-205ENST00000469550 MYOM1P52179 1685 aa12.18□□□□□ -0.46
HDAC3-205ENST00000469550 SLC24A1O60721 1099 aa12.18□□□□□ -0.46
HDAC3-205ENST00000469550 TXNRD1Q16881 649 aa12.18□□□□□ -0.46
HDAC3-205ENST00000469550 SLC12A5Q9H2X9 1139 aa12.18□□□□□ -0.46
HDAC3-205ENST00000469550 ANTXR1Q9H6X2 564 aa12.18□□□□□ -0.46
HDAC3-205ENST00000469550 QSER1Q2KHR3 1735 aa12.17□□□□□ -0.46
HDAC3-205ENST00000469550 IL2RBP14784 551 aa12.17□□□□□ -0.46
HDAC3-205ENST00000469550 CLUAP1Q96AJ1 413 aa12.17□□□□□ -0.46
HDAC3-205ENST00000469550 EIF5BO60841 1220 aaKnown RBP12.16□□□□□ -0.46
HDAC3-205ENST00000469550 BCAR3O75815 825 aa12.16□□□□□ -0.46
HDAC3-205ENST00000469550 ANKRD24Q8TF21 1146 aa12.16□□□□□ -0.46
HDAC3-205ENST00000469550 SPINK5Q9NQ38 1064 aaPredicted RBP12.16□□□□□ -0.46
HDAC3-205ENST00000469550 NLRP2Q9NX02 1062 aa12.16□□□□□ -0.46
HDAC3-205ENST00000469550 PPP1R1BQ9UD71 204 aaPredicted RBP12.16□□□□□ -0.46
HDAC3-205ENST00000469550 SHANK3Q9BYB0 1731 aa12.15□□□□□ -0.46
HDAC3-205ENST00000469550 APAF1O14727 1248 aa12.15□□□□□ -0.46
HDAC3-205ENST00000469550 SLC15A2Q16348 729 aa12.15□□□□□ -0.46
HDAC3-205ENST00000469550 IP6K1Q92551 441 aa12.15□□□□□ -0.46
HDAC3-205ENST00000469550 STK32BQ9NY57 414 aa12.15□□□□□ -0.46
HDAC3-205ENST00000469550 COL24A1Q17RW2 1714 aa12.15□□□□□ -0.46
HDAC3-205ENST00000469550 UPF2Q9HAU5 1272 aaKnown RBP12.14□□□□□ -0.47
HDAC3-205ENST00000469550 SEC24BO95487 1268 aa12.14□□□□□ -0.47
HDAC3-205ENST00000469550 PTGER2P43116 358 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms