RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 SDF4Q9BRK5 362 aa15.63■□□□□ 0.09
USP40-208ENST00000450966 CBFA2T2O43439 604 aa15.63■□□□□ 0.09
USP40-208ENST00000450966 KINO60870 393 aaKnown RBP15.63■□□□□ 0.09
USP40-208ENST00000450966 NOLC1Q14978 699 aaKnown RBP eCLIP15.63■□□□□ 0.09
USP40-208ENST00000450966 DZIP1LQ8IYY4 767 aaKnown RBP15.63■□□□□ 0.09
USP40-208ENST00000450966 CLASRPQ8N2M8 674 aaKnown RBP15.63■□□□□ 0.09
USP40-208ENST00000450966 SPG7Q9UQ90 795 aa15.63■□□□□ 0.09
USP40-208ENST00000450966 URB2Q14146 1524 aaKnown RBP15.63■□□□□ 0.09
USP40-208ENST00000450966 FMNL3Q8IVF7 1028 aa15.62■□□□□ 0.09
USP40-208ENST00000450966 VPS37DQ86XT2 251 aa15.62■□□□□ 0.09
USP40-208ENST00000450966 RUNDC1Q96C34 613 aa15.62■□□□□ 0.09
USP40-208ENST00000450966 RTEL1-TNFRSF6BF6WH68 1400 aa15.62■□□□□ 0.09
USP40-208ENST00000450966 NINLQ9Y2I6 1382 aa15.62■□□□□ 0.09
USP40-208ENST00000450966 MAP2K2P36507 400 aa15.61■□□□□ 0.09
USP40-208ENST00000450966 TNMDQ9H2S6 317 aa15.61■□□□□ 0.09
USP40-208ENST00000450966 RSPH14Q9UHP6 348 aa15.61■□□□□ 0.09
USP40-208ENST00000450966 KCNH5Q8NCM2 988 aa15.61■□□□□ 0.09
USP40-208ENST00000450966 EIF2S2P20042 333 aaKnown RBP15.61■□□□□ 0.09
USP40-208ENST00000450966 SWAP70Q9UH65 585 aa15.61■□□□□ 0.09
USP40-208ENST00000450966 ZSCAN12O43309 604 aa15.61■□□□□ 0.09
USP40-208ENST00000450966 DRC1Q96MC2 740 aa15.61■□□□□ 0.09
USP40-208ENST00000450966 PDCP20941 246 aa15.6■□□□□ 0.09
USP40-208ENST00000450966 NAP1L1P55209 391 aaKnown RBP15.6■□□□□ 0.09
USP40-208ENST00000450966 ATP6V1AP38606 617 aa15.6■□□□□ 0.09
USP40-208ENST00000450966 TRIM29Q14134 588 aa15.6■□□□□ 0.09
USP40-208ENST00000450966 RSRC1Q96IZ7 334 aaKnown RBP15.6■□□□□ 0.09
USP40-208ENST00000450966 ARAP1Q96P48 1450 aa15.6■□□□□ 0.09
USP40-208ENST00000450966 ODF2Q5BJF6 829 aa15.59■□□□□ 0.09
USP40-208ENST00000450966 CCDC47Q96A33 483 aaKnown RBP15.59■□□□□ 0.09
USP40-208ENST00000450966 LRRFIP2Q9Y608 721 aaKnown RBP15.59■□□□□ 0.09
USP40-208ENST00000450966 PPM1EQ8WY54 764 aa15.59■□□□□ 0.09
USP40-208ENST00000450966 C16orf45Q96MC5 204 aaPredicted RBP15.59■□□□□ 0.09
USP40-208ENST00000450966 PANK2Q9BZ23 570 aa15.59■□□□□ 0.09
USP40-208ENST00000450966 FILIP1LQ4L180 1135 aa15.59■□□□□ 0.09
USP40-208ENST00000450966 KIF6Q6ZMV9 814 aa15.59■□□□□ 0.09
USP40-208ENST00000450966 PRAM1Q96QH2 718 aa15.59■□□□□ 0.09
USP40-208ENST00000450966 KLHL40Q2TBA0 621 aa15.59■□□□□ 0.09
USP40-208ENST00000450966 ANO2Q9NQ90 1003 aa15.59■□□□□ 0.09
USP40-208ENST00000450966 ERBINQ96RT1 1412 aa15.58■□□□□ 0.09
USP40-208ENST00000450966 IFIT2P09913 472 aaKnown RBP15.58■□□□□ 0.08
USP40-208ENST00000450966 ARID4AP29374 1257 aaPredicted RBP15.58■□□□□ 0.08
USP40-208ENST00000450966 AP1ARQ63HQ0 302 aa15.58■□□□□ 0.08
USP40-208ENST00000450966 FBXW7Q969H0 707 aa15.58■□□□□ 0.08
USP40-208ENST00000450966 GOLGA6L9A6NEM1 432 aa15.58■□□□□ 0.08
USP40-208ENST00000450966 IGSF3O75054 1194 aa15.58■□□□□ 0.08
USP40-208ENST00000450966 TSPYL4Q9UJ04 414 aa15.58■□□□□ 0.08
USP40-208ENST00000450966 TIAM1Q13009 1591 aa15.58■□□□□ 0.08
USP40-208ENST00000450966 PSMD1Q99460 953 aa15.58■□□□□ 0.08
USP40-208ENST00000450966 PDZRN3Q9UPQ7 1066 aa15.58■□□□□ 0.08
USP40-208ENST00000450966 FIBPO43427 364 aa15.57■□□□□ 0.08
USP40-208ENST00000450966 RAD21O60216 631 aa15.57■□□□□ 0.08
USP40-208ENST00000450966 CCDC171Q6TFL3 1326 aa15.57■□□□□ 0.08
USP40-208ENST00000450966 HSPA4P34932 840 aa15.57■□□□□ 0.08
USP40-208ENST00000450966 RIPK4P57078 832 aa15.57■□□□□ 0.08
USP40-208ENST00000450966 CEP135Q66GS9 1140 aa15.57■□□□□ 0.08
USP40-208ENST00000450966 EFCC1Q9HA90 598 aa15.57■□□□□ 0.08
USP40-208ENST00000450966 PRDM11Q9NQV5 511 aa15.57■□□□□ 0.08
USP40-208ENST00000450966 DHX37Q8IY37 1157 aaKnown RBP15.56■□□□□ 0.08
USP40-208ENST00000450966 CABP2Q9NPB3 220 aa15.56■□□□□ 0.08
USP40-208ENST00000450966 TRDNQ13061 729 aa15.56■□□□□ 0.08
USP40-208ENST00000450966 CCDC183Q5T5S1 534 aa15.56■□□□□ 0.08
USP40-208ENST00000450966 SPATA24Q86W54 205 aa15.56■□□□□ 0.08
USP40-208ENST00000450966 URI1O94763 535 aaPredicted RBP15.56■□□□□ 0.08
USP40-208ENST00000450966 BCL2L13Q9BXK5 485 aa15.56■□□□□ 0.08
USP40-208ENST00000450966 G3BP1Q13283 466 aaKnown RBP eCLIP15.56■□□□□ 0.08
USP40-208ENST00000450966 PDE3AQ14432 1141 aa15.56■□□□□ 0.08
USP40-208ENST00000450966 TOM1L2Q6ZVM7 507 aa15.56■□□□□ 0.08
USP40-208ENST00000450966 LNPKQ9C0E8 428 aa15.56■□□□□ 0.08
USP40-208ENST00000450966 BRD4O60885 1362 aaPredicted RBP15.55■□□□□ 0.08
USP40-208ENST00000450966 NUP62CLQ9H1M0 184 aa15.55■□□□□ 0.08
USP40-208ENST00000450966 CAPN2P17655 700 aa15.55■□□□□ 0.08
USP40-208ENST00000450966 CPLX1O14810 134 aa15.55■□□□□ 0.08
USP40-208ENST00000450966 SERPINC1P01008 464 aa15.55■□□□□ 0.08
USP40-208ENST00000450966 CASQ1P31415 396 aa15.55■□□□□ 0.08
USP40-208ENST00000450966 NUP133Q8WUM0 1156 aa15.55■□□□□ 0.08
USP40-208ENST00000450966 TNPO1Q92973 898 aaKnown RBP15.55■□□□□ 0.08
USP40-208ENST00000450966 DHX16O60231 1041 aaKnown RBP15.54■□□□□ 0.08
USP40-208ENST00000450966 CCDC181Q5TID7 509 aa15.54■□□□□ 0.08
USP40-208ENST00000450966 RPAINQ86UA6 219 aa15.54■□□□□ 0.08
USP40-208ENST00000450966 CCDC148Q8NFR7 591 aa15.54■□□□□ 0.08
USP40-208ENST00000450966 FANCAO15360 1455 aa15.54■□□□□ 0.08
USP40-208ENST00000450966 TUBB4AP04350 444 aa15.54■□□□□ 0.08
USP40-208ENST00000450966 CFAP70Q5T0N1 1121 aa15.54■□□□□ 0.08
USP40-208ENST00000450966 SFPQP23246 707 aaKnown RBP eCLIP15.54■□□□□ 0.08
USP40-208ENST00000450966 KRBA2Q6ZNG9 492 aa15.54■□□□□ 0.08
USP40-208ENST00000450966 CEP57L1Q8IYX8 460 aa15.54■□□□□ 0.08
USP40-208ENST00000450966 TMEM132EQ6IEE7 984 aa15.54■□□□□ 0.08
USP40-208ENST00000450966 FAM177A1Q8N128 213 aaPredicted RBP15.54■□□□□ 0.08
USP40-208ENST00000450966 EBAG9O00559 213 aa15.54■□□□□ 0.08
USP40-208ENST00000450966 KLHL34Q8N239 644 aa15.54■□□□□ 0.08
USP40-208ENST00000450966 CDK19Q9BWU1 502 aa15.54■□□□□ 0.08
USP40-208ENST00000450966 RIC3Q7Z5B4 369 aa15.53■□□□□ 0.08
USP40-208ENST00000450966 PPFIBP1Q86W92 1011 aa15.53■□□□□ 0.08
USP40-208ENST00000450966 ARFGAP3Q9NP61 516 aa15.53■□□□□ 0.08
USP40-208ENST00000450966 USP25Q9UHP3 1055 aa15.53■□□□□ 0.08
USP40-208ENST00000450966 NUTM2BA6NNL0 878 aaPredicted RBP15.53■□□□□ 0.08
USP40-208ENST00000450966 NUTM2EB1AL46 878 aaPredicted RBP15.53■□□□□ 0.08
USP40-208ENST00000450966 NAA25Q14CX7 972 aa15.53■□□□□ 0.08
USP40-208ENST00000450966 NUTM2AQ8IVF1 878 aaPredicted RBP15.53■□□□□ 0.08
USP40-208ENST00000450966 MYRIPQ8NFW9 859 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms