RNA–Protein interactions for RNA: ENST00000449709.1

HMGB3P8-201, Transcript of high mobility group box 3 pseudogene 8, humanhuman

BASIC

Gene HMGB3P8, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P8-201ENST00000449709 FAM69CQ0P6D2 419 aa4.9□□□□□ -1.63
HMGB3P8-201ENST00000449709 USP17L24Q0WX57 530 aa4.9□□□□□ -1.63
HMGB3P8-201ENST00000449709 PTK7Q13308 1070 aa4.9□□□□□ -1.63
HMGB3P8-201ENST00000449709 CRTC2Q53ET0 693 aaPredicted RBP4.9□□□□□ -1.63
HMGB3P8-201ENST00000449709 ZNF326Q5BKZ1 582 aaKnown RBP4.9□□□□□ -1.63
HMGB3P8-201ENST00000449709 CRIPAKQ8N1N5 446 aa4.9□□□□□ -1.63
HMGB3P8-201ENST00000449709 FAM43AQ8N2R8 423 aa4.9□□□□□ -1.63
HMGB3P8-201ENST00000449709 PHTF2Q8N3S3 785 aa4.9□□□□□ -1.63
HMGB3P8-201ENST00000449709 MRGPRX2Q96LB1 330 aa4.9□□□□□ -1.63
HMGB3P8-201ENST00000449709 CEP126Q9P2H0 1117 aa4.9□□□□□ -1.63
HMGB3P8-201ENST00000449709 GMPR2Q9P2T1 348 aaKnown RBP4.9□□□□□ -1.63
HMGB3P8-201ENST00000449709 MKRN1Q9UHC7 482 aaKnown RBP4.9□□□□□ -1.63
HMGB3P8-201ENST00000449709 PRDM4Q9UKN5 801 aa4.9□□□□□ -1.63
HMGB3P8-201ENST00000449709 RBM47A0AV96 593 aaKnown RBP4.89□□□□□ -1.63
HMGB3P8-201ENST00000449709 UNCXA6NJT0 531 aa4.89□□□□□ -1.63
HMGB3P8-201ENST00000449709 J3QL48 77 aa4.89□□□□□ -1.63
HMGB3P8-201ENST00000449709 SMPD1P17405 629 aa4.89□□□□□ -1.63
HMGB3P8-201ENST00000449709 BRD2P25440 801 aaKnown RBP4.89□□□□□ -1.63
HMGB3P8-201ENST00000449709 DEPDC4Q8N2C3 294 aa4.89□□□□□ -1.63
HMGB3P8-201ENST00000449709 CLP1Q92989 425 aaKnown RBP4.89□□□□□ -1.63
HMGB3P8-201ENST00000449709 MAP10Q9P2G4 905 aa4.89□□□□□ -1.63
HMGB3P8-201ENST00000449709 NOP58Q9Y2X3 529 aaKnown RBP4.89□□□□□ -1.63
HMGB3P8-201ENST00000449709 GPSM3Q9Y4H4 160 aa4.89□□□□□ -1.63
HMGB3P8-201ENST00000449709 ATP5J2-PTCD1G3V325 749 aa4.88□□□□□ -1.63
HMGB3P8-201ENST00000449709 LZTS3O60299 673 aaPredicted RBP4.88□□□□□ -1.63
HMGB3P8-201ENST00000449709 JUNDP17535 347 aa4.88□□□□□ -1.63
HMGB3P8-201ENST00000449709 MCCD1P59942 119 aaPredicted RBP4.88□□□□□ -1.63
HMGB3P8-201ENST00000449709 SKOR1P84550 965 aa4.88□□□□□ -1.63
HMGB3P8-201ENST00000449709 CALD1Q05682 793 aaKnown RBP4.88□□□□□ -1.63
HMGB3P8-201ENST00000449709 NCOA4Q13772 614 aa4.88□□□□□ -1.63
HMGB3P8-201ENST00000449709 PTPRNQ16849 979 aa4.88□□□□□ -1.63
HMGB3P8-201ENST00000449709 PDXDC2PQ6P474 469 aa4.88□□□□□ -1.63
HMGB3P8-201ENST00000449709 LARP1Q6PKG0 1096 aaKnown RBP4.88□□□□□ -1.63
HMGB3P8-201ENST00000449709 DNAJC14Q6Y2X3 702 aaPredicted RBP4.88□□□□□ -1.63
HMGB3P8-201ENST00000449709 SNIP1Q8TAD8 396 aaKnown RBP4.88□□□□□ -1.63
HMGB3P8-201ENST00000449709 FAM200AQ8TCP9 573 aa4.88□□□□□ -1.63
HMGB3P8-201ENST00000449709 OCSTAMPQ9BR26 566 aa4.88□□□□□ -1.63
HMGB3P8-201ENST00000449709 CDCA7Q9BWT1 371 aaPredicted RBP4.88□□□□□ -1.63
HMGB3P8-201ENST00000449709 CHIC2Q9UKJ5 165 aa4.88□□□□□ -1.63
HMGB3P8-201ENST00000449709 NCAPD3P42695 1498 aa4.88□□□□□ -1.63
HMGB3P8-201ENST00000449709 ERCC3P19447 782 aa4.87□□□□□ -1.63
HMGB3P8-201ENST00000449709 RASA1P20936 1047 aa4.87□□□□□ -1.63
HMGB3P8-201ENST00000449709 SMCPP49901 116 aaPredicted RBP4.87□□□□□ -1.63
HMGB3P8-201ENST00000449709 PTK2Q05397 1052 aa4.87□□□□□ -1.63
HMGB3P8-201ENST00000449709 CTC1Q2NKJ3 1217 aa4.87□□□□□ -1.63
HMGB3P8-201ENST00000449709 RC3H1Q5TC82 1133 aaKnown RBP4.87□□□□□ -1.63
HMGB3P8-201ENST00000449709 ANKMY2Q8IV38 441 aa4.87□□□□□ -1.63
HMGB3P8-201ENST00000449709 ZNF592Q92610 1267 aa4.87□□□□□ -1.63
HMGB3P8-201ENST00000449709 GPKOWQ92917 476 aaPredicted RBP eCLIP4.87□□□□□ -1.63
HMGB3P8-201ENST00000449709 SOWAHDA6NJG2 315 aa4.86□□□□□ -1.63
HMGB3P8-201ENST00000449709 CTHP32929 405 aa4.86□□□□□ -1.63
HMGB3P8-201ENST00000449709 MAP7D1Q3KQU3 841 aa4.86□□□□□ -1.63
HMGB3P8-201ENST00000449709 SLFNL1Q499Z3 407 aa4.86□□□□□ -1.63
HMGB3P8-201ENST00000449709 NOM1Q5C9Z4 860 aaKnown RBP4.86□□□□□ -1.63
HMGB3P8-201ENST00000449709 PTCRAQ6ISU1 281 aaPredicted RBP4.86□□□□□ -1.63
HMGB3P8-201ENST00000449709 TREML4Q6UXN2 200 aa4.86□□□□□ -1.63
HMGB3P8-201ENST00000449709 RNF135Q8IUD6 432 aa4.86□□□□□ -1.63
HMGB3P8-201ENST00000449709 PLPP7Q8NBV4 271 aa4.86□□□□□ -1.63
HMGB3P8-201ENST00000449709 ARMC2Q8NEN0 867 aa4.86□□□□□ -1.63
HMGB3P8-201ENST00000449709 HPS1Q92902 700 aa4.86□□□□□ -1.63
HMGB3P8-201ENST00000449709 IGSF5Q9NSI5 407 aa4.86□□□□□ -1.63
HMGB3P8-201ENST00000449709 EVA1BQ9NVM1 165 aa4.86□□□□□ -1.63
HMGB3P8-201ENST00000449709 DKK1O94907 266 aa4.85□□□□□ -1.63
HMGB3P8-201ENST00000449709 KCNH2Q12809 1159 aa4.85□□□□□ -1.63
HMGB3P8-201ENST00000449709 SWI5Q1ZZU3 235 aa4.85□□□□□ -1.63
HMGB3P8-201ENST00000449709 LCE2AQ5TA79 106 aaPredicted RBP4.85□□□□□ -1.63
HMGB3P8-201ENST00000449709 C1orf216Q8TAB5 229 aa4.85□□□□□ -1.63
HMGB3P8-201ENST00000449709 NUDT12Q9BQG2 462 aa4.85□□□□□ -1.63
HMGB3P8-201ENST00000449709 ATP13A2Q9NQ11 1180 aa4.85□□□□□ -1.63
HMGB3P8-201ENST00000449709 PCDHB9Q9Y5E1 797 aa4.85□□□□□ -1.63
HMGB3P8-201ENST00000449709 ZCCHC6Q5VYS8 1495 aaKnown RBP4.85□□□□□ -1.63
HMGB3P8-201ENST00000449709 CCNYL3P0C7X3 344 aa4.84□□□□□ -1.63
HMGB3P8-201ENST00000449709 ATP2B4P23634 1241 aa4.84□□□□□ -1.63
HMGB3P8-201ENST00000449709 SERPINB4P48594 390 aa4.84□□□□□ -1.63
HMGB3P8-201ENST00000449709 WNT7BP56706 349 aa4.84□□□□□ -1.63
HMGB3P8-201ENST00000449709 CLDN10P78369 228 aa4.84□□□□□ -1.63
HMGB3P8-201ENST00000449709 DPYDQ12882 1025 aa4.84□□□□□ -1.63
HMGB3P8-201ENST00000449709 EML3Q32P44 896 aa4.84□□□□□ -1.63
HMGB3P8-201ENST00000449709 TSGA10IPQ3SY00 556 aa4.84□□□□□ -1.63
HMGB3P8-201ENST00000449709 OGFOD1Q8N543 542 aa4.84□□□□□ -1.63
HMGB3P8-201ENST00000449709 IPO4Q8TEX9 1081 aaKnown RBP4.84□□□□□ -1.63
HMGB3P8-201ENST00000449709 SHROOM4Q9ULL8 1493 aa4.83□□□□□ -1.64
HMGB3P8-201ENST00000449709 A0A0U1RQG5 324 aaPredicted RBP4.83□□□□□ -1.64
HMGB3P8-201ENST00000449709 LOC100996750A0A140TA64 210 aa4.83□□□□□ -1.64
HMGB3P8-201ENST00000449709 ZBTB7BO15156 539 aaPredicted RBP4.83□□□□□ -1.64
HMGB3P8-201ENST00000449709 ALDH1A1P00352 501 aa4.83□□□□□ -1.64
HMGB3P8-201ENST00000449709 SNRPBP14678 240 aaKnown RBP4.83□□□□□ -1.64
HMGB3P8-201ENST00000449709 TRIM50Q86XT4 487 aa4.83□□□□□ -1.64
HMGB3P8-201ENST00000449709 LARGE2Q8N3Y3 721 aa4.83□□□□□ -1.64
HMGB3P8-201ENST00000449709 ADAM32Q8TC27 787 aa4.83□□□□□ -1.64
HMGB3P8-201ENST00000449709 SIRT1Q96EB6 747 aa4.83□□□□□ -1.64
HMGB3P8-201ENST00000449709 KRTAP4-6Q9BYQ5 205 aa4.83□□□□□ -1.64
HMGB3P8-201ENST00000449709 DNAAF2Q9NVR5 837 aaKnown RBP4.83□□□□□ -1.64
HMGB3P8-201ENST00000449709 KIAA1522Q9P206 1035 aaPredicted RBP4.83□□□□□ -1.64
HMGB3P8-201ENST00000449709 EEA1Q15075 1411 aa4.82□□□□□ -1.64
HMGB3P8-201ENST00000449709 WFS1O76024 890 aa4.82□□□□□ -1.64
HMGB3P8-201ENST00000449709 ZNF16P17020 682 aaPredicted RBP4.82□□□□□ -1.64
HMGB3P8-201ENST00000449709 GTF2E1P29083 439 aaPredicted RBP4.82□□□□□ -1.64
HMGB3P8-201ENST00000449709 SCNN1AP37088 669 aa4.82□□□□□ -1.64
HMGB3P8-201ENST00000449709 ATP1A2P50993 1020 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms