RNA–Protein interactions for RNA: ENST00000420996.2

UPF3AP3-201, Transcript of UPF3A pseudogene 3, humanhuman

BASIC

Gene UPF3AP3, Length 769 nt, Biotype transcribed processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AP3-201ENST00000420996 ZNF784Q8NCA9 323 aaPredicted RBP23.69■■□□□ 1.38
UPF3AP3-201ENST00000420996 LY75O60449 1722 aa23.69■■□□□ 1.38
UPF3AP3-201ENST00000420996 RTL1A6NKG5 1358 aa23.68■■□□□ 1.38
UPF3AP3-201ENST00000420996 COL24A1Q17RW2 1714 aa23.68■■□□□ 1.38
UPF3AP3-201ENST00000420996 NSD2O96028 1365 aa23.66■■□□□ 1.38
UPF3AP3-201ENST00000420996 TUBGCP6Q96RT7 1819 aa23.66■■□□□ 1.38
UPF3AP3-201ENST00000420996 PNPLA7Q6ZV29 1317 aa23.66■■□□□ 1.38
UPF3AP3-201ENST00000420996 MEGF6O75095 1541 aa23.66■■□□□ 1.38
UPF3AP3-201ENST00000420996 TFCP2L1Q9NZI6 479 aa23.66■■□□□ 1.38
UPF3AP3-201ENST00000420996 FYB1O15117 783 aa23.65■■□□□ 1.38
UPF3AP3-201ENST00000420996 KCNQ4P56696 695 aa23.65■■□□□ 1.38
UPF3AP3-201ENST00000420996 CGNL1Q0VF96 1302 aa23.64■■□□□ 1.38
UPF3AP3-201ENST00000420996 POLD1P28340 1107 aa23.64■■□□□ 1.37
UPF3AP3-201ENST00000420996 RRS1Q15050 365 aaKnown RBP23.64■■□□□ 1.37
UPF3AP3-201ENST00000420996 NBPF6Q5VWK0 638 aa23.64■■□□□ 1.37
UPF3AP3-201ENST00000420996 NBPF4Q96M43 638 aa23.64■■□□□ 1.37
UPF3AP3-201ENST00000420996 TMF1P82094 1093 aa23.63■■□□□ 1.37
UPF3AP3-201ENST00000420996 GGNBP2Q9H3C7 697 aa23.62■■□□□ 1.37
UPF3AP3-201ENST00000420996 GPR162Q16538 588 aa23.61■■□□□ 1.37
UPF3AP3-201ENST00000420996 CCNL1Q9UK58 526 aaPredicted RBP23.61■■□□□ 1.37
UPF3AP3-201ENST00000420996 SMG6Q86US8 1419 aaKnown RBP23.6■■□□□ 1.37
UPF3AP3-201ENST00000420996 RAPGEF4Q8WZA2 1011 aa23.6■■□□□ 1.37
UPF3AP3-201ENST00000420996 KLHL34Q8N239 644 aa23.59■■□□□ 1.37
UPF3AP3-201ENST00000420996 USHBP1Q8N6Y0 703 aa23.59■■□□□ 1.37
UPF3AP3-201ENST00000420996 USP47Q96K76 1375 aa23.59■■□□□ 1.37
UPF3AP3-201ENST00000420996 UTRNP46939 3433 aa23.59■■□□□ 1.37
UPF3AP3-201ENST00000420996 KIF20BQ96Q89 1820 aa23.57■■□□□ 1.36
UPF3AP3-201ENST00000420996 INSRP06213 1382 aa23.57■■□□□ 1.36
UPF3AP3-201ENST00000420996 TATP17735 454 aaPredicted RBP23.57■■□□□ 1.36
UPF3AP3-201ENST00000420996 KIF24Q5T7B8 1368 aa23.56■■□□□ 1.36
UPF3AP3-201ENST00000420996 CDCA8Q53HL2 280 aa23.56■■□□□ 1.36
UPF3AP3-201ENST00000420996 HSP90AB2PQ58FF8 381 aa23.56■■□□□ 1.36
UPF3AP3-201ENST00000420996 FLT4P35916 1363 aa23.54■■□□□ 1.36
UPF3AP3-201ENST00000420996 COL23A1Q86Y22 540 aaPredicted RBP23.54■■□□□ 1.36
UPF3AP3-201ENST00000420996 PCDH11XQ9BZA7 1347 aa23.54■■□□□ 1.36
UPF3AP3-201ENST00000420996 PCDH11YQ9BZA8 1340 aa23.54■■□□□ 1.36
UPF3AP3-201ENST00000420996 MSH5O43196 834 aa23.53■■□□□ 1.36
UPF3AP3-201ENST00000420996 HMGB2P26583 209 aaKnown RBP23.53■■□□□ 1.36
UPF3AP3-201ENST00000420996 NLGN2Q8NFZ4 835 aa23.52■■□□□ 1.36
UPF3AP3-201ENST00000420996 C5P01031 1676 aa23.51■■□□□ 1.35
UPF3AP3-201ENST00000420996 PELP1Q8IZL8 1130 aaKnown RBP23.51■■□□□ 1.35
UPF3AP3-201ENST00000420996 TAF1LQ8IZX4 1826 aa23.5■■□□□ 1.35
UPF3AP3-201ENST00000420996 CARD14Q9BXL6 1004 aa23.49■■□□□ 1.35
UPF3AP3-201ENST00000420996 CYP27B1O15528 508 aa23.48■■□□□ 1.35
UPF3AP3-201ENST00000420996 C1QTNF8P60827 252 aa23.48■■□□□ 1.35
UPF3AP3-201ENST00000420996 PALLDQ8WX93 1383 aa23.48■■□□□ 1.35
UPF3AP3-201ENST00000420996 ITGB4P16144 1822 aa23.47■■□□□ 1.35
UPF3AP3-201ENST00000420996 MPRIPQ6WCQ1 1025 aa23.47■■□□□ 1.35
UPF3AP3-201ENST00000420996 FLAD1Q8NFF5 587 aa23.47■■□□□ 1.35
UPF3AP3-201ENST00000420996 PKD1L3Q7Z443 1732 aa23.46■■□□□ 1.35
UPF3AP3-201ENST00000420996 EMILIN1Q9Y6C2 1016 aa23.46■■□□□ 1.35
UPF3AP3-201ENST00000420996 TOGARAM1Q9Y4F4 1720 aa23.45■■□□□ 1.34
UPF3AP3-201ENST00000420996 GRIN3BO60391 1043 aa23.45■■□□□ 1.34
UPF3AP3-201ENST00000420996 MSL1Q68DK7 614 aa23.45■■□□□ 1.34
UPF3AP3-201ENST00000420996 SMARCC1Q92922 1105 aaPredicted RBP23.45■■□□□ 1.34
UPF3AP3-201ENST00000420996 NSD3Q9BZ95 1437 aa23.44■■□□□ 1.34
UPF3AP3-201ENST00000420996 NCAPD2Q15021 1401 aa23.43■■□□□ 1.34
UPF3AP3-201ENST00000420996 YBX3P16989 372 aaKnown RBP eCLIP23.43■■□□□ 1.34
UPF3AP3-201ENST00000420996 C4BP0C0L5 1744 aa23.42■■□□□ 1.34
UPF3AP3-201ENST00000420996 ANKRD26Q9UPS8 1709 aa23.42■■□□□ 1.34
UPF3AP3-201ENST00000420996 SENP3-EIF4A1A0A087X0R7 540 aa23.42■■□□□ 1.34
UPF3AP3-201ENST00000420996 TRIM26Q12899 539 aaPredicted RBP23.42■■□□□ 1.34
UPF3AP3-201ENST00000420996 NKX1-1Q15270 411 aaPredicted RBP23.42■■□□□ 1.34
UPF3AP3-201ENST00000420996 MAP2P11137 1827 aaKnown RBP23.42■■□□□ 1.34
UPF3AP3-201ENST00000420996 PPM1GO15355 546 aaPredicted RBP23.41■■□□□ 1.34
UPF3AP3-201ENST00000420996 SPG7Q9UQ90 795 aa23.41■■□□□ 1.34
UPF3AP3-201ENST00000420996 CD2APQ9Y5K6 639 aa23.41■■□□□ 1.34
UPF3AP3-201ENST00000420996 WASHC2AQ641Q2 1341 aa23.4■■□□□ 1.34
UPF3AP3-201ENST00000420996 PIGBQ92521 554 aa23.4■■□□□ 1.34
UPF3AP3-201ENST00000420996 GIGYF1O75420 1035 aaPredicted RBP23.39■■□□□ 1.33
UPF3AP3-201ENST00000420996 AK7Q96M32 723 aa23.39■■□□□ 1.33
UPF3AP3-201ENST00000420996 GOLGB1Q14789 3259 aaKnown RBP23.38■■□□□ 1.33
UPF3AP3-201ENST00000420996 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.38■■□□□ 1.33
UPF3AP3-201ENST00000420996 UBR3Q6ZT12 1888 aa23.38■■□□□ 1.33
UPF3AP3-201ENST00000420996 EYA1Q99502 592 aa23.37■■□□□ 1.33
UPF3AP3-201ENST00000420996 TIMELESSQ9UNS1 1208 aa23.37■■□□□ 1.33
UPF3AP3-201ENST00000420996 AMIGO3Q86WK7 504 aa23.35■■□□□ 1.33
UPF3AP3-201ENST00000420996 POLKQ9UBT6 870 aa23.34■■□□□ 1.33
UPF3AP3-201ENST00000420996 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.33■■□□□ 1.33
UPF3AP3-201ENST00000420996 LOC102724428A0A0B4J2F2 783 aa23.33■■□□□ 1.33
UPF3AP3-201ENST00000420996 SIK1P57059 783 aa23.33■■□□□ 1.33
UPF3AP3-201ENST00000420996 TMOD3Q9NYL9 352 aa23.33■■□□□ 1.33
UPF3AP3-201ENST00000420996 PHF14O94880 888 aa23.32■■□□□ 1.32
UPF3AP3-201ENST00000420996 SSFA2P28290 1259 aa23.32■■□□□ 1.32
UPF3AP3-201ENST00000420996 IFNL2Q8IZJ0 200 aa23.32■■□□□ 1.32
UPF3AP3-201ENST00000420996 SMIM5Q71RC9 77 aa23.31■■□□□ 1.32
UPF3AP3-201ENST00000420996 LINC00116Q8NCU8 138 aa23.31■■□□□ 1.32
UPF3AP3-201ENST00000420996 PHKG2P15735 406 aa23.3■■□□□ 1.32
UPF3AP3-201ENST00000420996 ASAP1Q9ULH1 1129 aa23.3■■□□□ 1.32
UPF3AP3-201ENST00000420996 EIF4A2Q14240 407 aaKnown RBP23.28■■□□□ 1.32
UPF3AP3-201ENST00000420996 PLEKHG2Q9H7P9 1386 aa23.27■■□□□ 1.32
UPF3AP3-201ENST00000420996 ATP10DQ9P241 1426 aa23.27■■□□□ 1.32
UPF3AP3-201ENST00000420996 ATP6V1AP38606 617 aa23.27■■□□□ 1.32
UPF3AP3-201ENST00000420996 ITPK1Q13572 414 aa23.27■■□□□ 1.32
UPF3AP3-201ENST00000420996 ATG3Q9NT62 314 aa23.26■■□□□ 1.31
UPF3AP3-201ENST00000420996 IGSF1Q8N6C5 1336 aa23.26■■□□□ 1.31
UPF3AP3-201ENST00000420996 GNPATO15228 680 aa23.25■■□□□ 1.31
UPF3AP3-201ENST00000420996 TNNT2P45379 298 aaPredicted RBP23.25■■□□□ 1.31
UPF3AP3-201ENST00000420996 POLR3GLQ9BT43 218 aa23.25■■□□□ 1.31
UPF3AP3-201ENST00000420996 CLSPNQ9HAW4 1339 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms