RNA–Protein interactions for RNA: ENST00000420101.6

SEMA4D-204, Transcript of semaphorin 4D, humanhuman

TSL 1 (best) BASIC

Gene SEMA4D, Length 1,837 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-204ENST00000420101 SLIT3O75094 1523 aa18.66■□□□□ 0.58
SEMA4D-204ENST00000420101 CLCN1P35523 988 aa18.65■□□□□ 0.58
SEMA4D-204ENST00000420101 SLC4A3P48751 1232 aa18.65■□□□□ 0.58
SEMA4D-204ENST00000420101 EXOSC9Q06265 439 aaKnown RBP18.65■□□□□ 0.58
SEMA4D-204ENST00000420101 CABLES1Q8TDN4 633 aa18.65■□□□□ 0.58
SEMA4D-204ENST00000420101 LTN1O94822 1766 aa18.65■□□□□ 0.58
SEMA4D-204ENST00000420101 AAMPQ13685 434 aa18.65■□□□□ 0.58
SEMA4D-204ENST00000420101 DCTN1Q14203 1278 aa18.65■□□□□ 0.58
SEMA4D-204ENST00000420101 RTF1Q92541 710 aaKnown RBP18.65■□□□□ 0.58
SEMA4D-204ENST00000420101 ISY1Q9ULR0 285 aaKnown RBP18.65■□□□□ 0.58
SEMA4D-204ENST00000420101 SPATA31A3Q5VYP0 1347 aa18.64■□□□□ 0.57
SEMA4D-204ENST00000420101 HAP1P54257 671 aaPredicted RBP18.64■□□□□ 0.57
SEMA4D-204ENST00000420101 GNAI1P63096 354 aa18.64■□□□□ 0.57
SEMA4D-204ENST00000420101 RGPD1P0DJD0 1748 aa18.64■□□□□ 0.57
SEMA4D-204ENST00000420101 GAS2L2Q8NHY3 880 aa18.63■□□□□ 0.57
SEMA4D-204ENST00000420101 MTHFSDQ2M296 383 aaKnown RBP18.63■□□□□ 0.57
SEMA4D-204ENST00000420101 ANKRD24Q8TF21 1146 aa18.63■□□□□ 0.57
SEMA4D-204ENST00000420101 KDRP35968 1356 aa18.62■□□□□ 0.57
SEMA4D-204ENST00000420101 RARSP54136 660 aaKnown RBP18.62■□□□□ 0.57
SEMA4D-204ENST00000420101 LRRC59Q96AG4 307 aaKnown RBP18.62■□□□□ 0.57
SEMA4D-204ENST00000420101 BCL2L13Q9BXK5 485 aa18.62■□□□□ 0.57
SEMA4D-204ENST00000420101 IFT57Q9NWB7 429 aa18.62■□□□□ 0.57
SEMA4D-204ENST00000420101 PXDNQ92626 1479 aa18.62■□□□□ 0.57
SEMA4D-204ENST00000420101 NBPF6Q5VWK0 638 aa18.61■□□□□ 0.57
SEMA4D-204ENST00000420101 MCM10Q7L590 875 aa18.61■□□□□ 0.57
SEMA4D-204ENST00000420101 NBPF4Q96M43 638 aa18.61■□□□□ 0.57
SEMA4D-204ENST00000420101 ALS2Q96Q42 1657 aa18.61■□□□□ 0.57
SEMA4D-204ENST00000420101 CT47B1P0C2W7 299 aaPredicted RBP18.6■□□□□ 0.57
SEMA4D-204ENST00000420101 C20orf194Q5TEA3 1177 aa18.6■□□□□ 0.57
SEMA4D-204ENST00000420101 MED1Q15648 1581 aaPredicted RBP18.58■□□□□ 0.57
SEMA4D-204ENST00000420101 CSB-PGBD3P0DP91 1061 aa18.58■□□□□ 0.57
SEMA4D-204ENST00000420101 CFAP44Q96MT7 982 aa18.58■□□□□ 0.57
SEMA4D-204ENST00000420101 RRAGDQ9NQL2 400 aaPredicted RBP18.58■□□□□ 0.57
SEMA4D-204ENST00000420101 AXIN2Q9Y2T1 843 aa18.58■□□□□ 0.57
SEMA4D-204ENST00000420101 MBIPQ9NS73 344 aa18.58■□□□□ 0.56
SEMA4D-204ENST00000420101 SMC4Q9NTJ3 1288 aa18.58■□□□□ 0.56
SEMA4D-204ENST00000420101 SOS2Q07890 1332 aaPredicted RBP18.57■□□□□ 0.56
SEMA4D-204ENST00000420101 FSD2A1L4K1 749 aa18.57■□□□□ 0.56
SEMA4D-204ENST00000420101 HSP90AA1P07900 732 aaKnown RBP18.57■□□□□ 0.56
SEMA4D-204ENST00000420101 CHRNA2Q15822 529 aa18.57■□□□□ 0.56
SEMA4D-204ENST00000420101 GOLGA6L3A6NEY3 463 aa18.56■□□□□ 0.56
SEMA4D-204ENST00000420101 GNAT3A8MTJ3 354 aa18.56■□□□□ 0.56
SEMA4D-204ENST00000420101 UPF2Q9HAU5 1272 aaKnown RBP18.56■□□□□ 0.56
SEMA4D-204ENST00000420101 ELL2O00472 640 aaPredicted RBP18.55■□□□□ 0.56
SEMA4D-204ENST00000420101 HSP90AA2PQ14568 343 aaPredicted RBP18.55■□□□□ 0.56
SEMA4D-204ENST00000420101 NLRP2Q9NX02 1062 aa18.55■□□□□ 0.56
SEMA4D-204ENST00000420101 DLG5Q8TDM6 1919 aa18.55■□□□□ 0.56
SEMA4D-204ENST00000420101 ZNF853P0CG23 659 aa18.54■□□□□ 0.56
SEMA4D-204ENST00000420101 PHRF1Q9P1Y6 1649 aaKnown RBP18.54■□□□□ 0.56
SEMA4D-204ENST00000420101 PDE3AQ14432 1141 aa18.53■□□□□ 0.56
SEMA4D-204ENST00000420101 ANTXR1Q9H6X2 564 aa18.53■□□□□ 0.56
SEMA4D-204ENST00000420101 KIAA0232Q92628 1395 aa18.53■□□□□ 0.56
SEMA4D-204ENST00000420101 HTATSF1O43719 755 aaKnown RBP18.53■□□□□ 0.56
SEMA4D-204ENST00000420101 ERBB3P21860 1342 aa18.53■□□□□ 0.56
SEMA4D-204ENST00000420101 PLEKHO1Q53GL0 409 aaPredicted RBP18.53■□□□□ 0.56
SEMA4D-204ENST00000420101 PRDM11Q9NQV5 511 aa18.53■□□□□ 0.56
SEMA4D-204ENST00000420101 SSH1Q8WYL5 1049 aa18.52■□□□□ 0.56
SEMA4D-204ENST00000420101 MAP3K5Q99683 1374 aa18.51■□□□□ 0.55
SEMA4D-204ENST00000420101 MRE11P49959 708 aa18.51■□□□□ 0.55
SEMA4D-204ENST00000420101 TWISTNBQ3B726 338 aaPredicted RBP18.51■□□□□ 0.55
SEMA4D-204ENST00000420101 ZKSCAN2Q63HK3 967 aa18.51■□□□□ 0.55
SEMA4D-204ENST00000420101 PANK1Q8TE04 598 aa18.51■□□□□ 0.55
SEMA4D-204ENST00000420101 TSPYL4Q9UJ04 414 aa18.51■□□□□ 0.55
SEMA4D-204ENST00000420101 AMOTQ4VCS5 1084 aa18.5■□□□□ 0.55
SEMA4D-204ENST00000420101 ZNF530Q6P9A1 599 aaPredicted RBP18.5■□□□□ 0.55
SEMA4D-204ENST00000420101 FTSJ3Q8IY81 847 aaKnown RBP18.5■□□□□ 0.55
SEMA4D-204ENST00000420101 TSPYL6Q8N831 410 aa18.5■□□□□ 0.55
SEMA4D-204ENST00000420101 CLUAP1Q96AJ1 413 aa18.5■□□□□ 0.55
SEMA4D-204ENST00000420101 CHL1O00533 1208 aa18.49■□□□□ 0.55
SEMA4D-204ENST00000420101 RGS3P49796 1198 aa18.49■□□□□ 0.55
SEMA4D-204ENST00000420101 C1orf141Q5JVX7 400 aa18.49■□□□□ 0.55
SEMA4D-204ENST00000420101 SKAP1Q86WV1 359 aa18.49■□□□□ 0.55
SEMA4D-204ENST00000420101 RAPGEF4Q8WZA2 1011 aa18.49■□□□□ 0.55
SEMA4D-204ENST00000420101 MIS18AQ9NYP9 233 aa18.49■□□□□ 0.55
SEMA4D-204ENST00000420101 VAMP4O75379 141 aa18.49■□□□□ 0.55
SEMA4D-204ENST00000420101 ALDH1L2Q3SY69 923 aa18.49■□□□□ 0.55
SEMA4D-204ENST00000420101 ZNF428Q96B54 188 aa18.49■□□□□ 0.55
SEMA4D-204ENST00000420101 NAP1L5Q96NT1 182 aaPredicted RBP18.49■□□□□ 0.55
SEMA4D-204ENST00000420101 COG6Q9Y2V7 657 aa18.49■□□□□ 0.55
SEMA4D-204ENST00000420101 C8orf58Q8NAV2 365 aa18.48■□□□□ 0.55
SEMA4D-204ENST00000420101 CPDO75976 1380 aa18.48■□□□□ 0.55
SEMA4D-204ENST00000420101 IPO8O15397 1037 aaKnown RBP18.47■□□□□ 0.55
SEMA4D-204ENST00000420101 XRCC6P12956 609 aaKnown RBP eCLIP18.47■□□□□ 0.55
SEMA4D-204ENST00000420101 NOB1Q9ULX3 412 aaKnown RBP18.47■□□□□ 0.55
SEMA4D-204ENST00000420101 CRB1P82279 1406 aa18.47■□□□□ 0.55
SEMA4D-204ENST00000420101 KIF16BQ96L93 1317 aa18.47■□□□□ 0.55
SEMA4D-204ENST00000420101 TPM2P07951 284 aa18.46■□□□□ 0.55
SEMA4D-204ENST00000420101 TATP17735 454 aaPredicted RBP18.46■□□□□ 0.55
SEMA4D-204ENST00000420101 AKAP4Q5JQC9 854 aa18.46■□□□□ 0.55
SEMA4D-204ENST00000420101 IL17REQ8NFR9 667 aa18.46■□□□□ 0.55
SEMA4D-204ENST00000420101 TNNQ9UQP3 1299 aa18.46■□□□□ 0.55
SEMA4D-204ENST00000420101 RGPD2P0DJD1 1756 aa18.46■□□□□ 0.55
SEMA4D-204ENST00000420101 LTBP4Q8N2S1 1624 aa18.46■□□□□ 0.55
SEMA4D-204ENST00000420101 PTMSP20962 102 aa18.45■□□□□ 0.54
SEMA4D-204ENST00000420101 AEBP2Q6ZN18 517 aaPredicted RBP18.45■□□□□ 0.54
SEMA4D-204ENST00000420101 DZIP1LQ8IYY4 767 aaKnown RBP18.45■□□□□ 0.54
SEMA4D-204ENST00000420101 PIP4K2BP78356 416 aa18.44■□□□□ 0.54
SEMA4D-204ENST00000420101 ZMYND15Q9H091 742 aa18.44■□□□□ 0.54
SEMA4D-204ENST00000420101 RGPD5Q99666 1765 aa18.44■□□□□ 0.54
SEMA4D-204ENST00000420101 MCM4P33991 863 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms