RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 GSPT1P15170 499 aaKnown RBP12.11□□□□□ -0.47
CD44-206ENST00000415148 METP08581 1390 aa12.1□□□□□ -0.47
CD44-206ENST00000415148 FAM69CQ0P6D2 419 aa12.1□□□□□ -0.47
CD44-206ENST00000415148 PKP1Q13835 747 aa12.1□□□□□ -0.47
CD44-206ENST00000415148 C16orf71Q8IYS4 520 aaPredicted RBP12.1□□□□□ -0.47
CD44-206ENST00000415148 CHAMP1Q96JM3 812 aa12.1□□□□□ -0.47
CD44-206ENST00000415148 ZRANB1Q9UGI0 708 aa12.1□□□□□ -0.47
CD44-206ENST00000415148 IBTKQ9P2D0 1353 aaPredicted RBP12.09□□□□□ -0.47
CD44-206ENST00000415148 FAM83GA6ND36 823 aa12.09□□□□□ -0.47
CD44-206ENST00000415148 RRS1Q15050 365 aaKnown RBP12.09□□□□□ -0.47
CD44-206ENST00000415148 USP26Q9BXU7 913 aa12.09□□□□□ -0.47
CD44-206ENST00000415148 CASC1Q6TDU7 716 aa12.08□□□□□ -0.47
CD44-206ENST00000415148 OTUD7AQ8TE49 926 aaPredicted RBP12.08□□□□□ -0.47
CD44-206ENST00000415148 TSPOAP1O95153 1857 aa12.08□□□□□ -0.48
CD44-206ENST00000415148 RGS12O14924 1447 aa12.08□□□□□ -0.48
CD44-206ENST00000415148 ATP10DQ9P241 1426 aa12.08□□□□□ -0.48
CD44-206ENST00000415148 NUCB2P80303 420 aa12.08□□□□□ -0.48
CD44-206ENST00000415148 TXNDC2Q86VQ3 553 aa12.08□□□□□ -0.48
CD44-206ENST00000415148 BAG4O95429 457 aaKnown RBP12.07□□□□□ -0.48
CD44-206ENST00000415148 EIF4A2Q14240 407 aaKnown RBP12.07□□□□□ -0.48
CD44-206ENST00000415148 CEP85Q6P2H3 762 aa12.07□□□□□ -0.48
CD44-206ENST00000415148 CWC22Q9HCG8 908 aaKnown RBP12.07□□□□□ -0.48
CD44-206ENST00000415148 DCTN1Q14203 1278 aa12.06□□□□□ -0.48
CD44-206ENST00000415148 HSP90AA2PQ14568 343 aaPredicted RBP12.06□□□□□ -0.48
CD44-206ENST00000415148 KLHL40Q2TBA0 621 aa12.06□□□□□ -0.48
CD44-206ENST00000415148 SULT6B1Q6IMI4 303 aa12.06□□□□□ -0.48
CD44-206ENST00000415148 RGPD1P0DJD0 1748 aa12.06□□□□□ -0.48
CD44-206ENST00000415148 PLEKHG3A1L390 1219 aa12.06□□□□□ -0.48
CD44-206ENST00000415148 TRIM44Q96DX7 344 aaPredicted RBP12.06□□□□□ -0.48
CD44-206ENST00000415148 TTC21BQ7Z4L5 1316 aa12.06□□□□□ -0.48
CD44-206ENST00000415148 RTL1A6NKG5 1358 aa12.06□□□□□ -0.48
CD44-206ENST00000415148 HMMRO75330 724 aa12.05□□□□□ -0.48
CD44-206ENST00000415148 OSBPL3Q9H4L5 887 aa12.05□□□□□ -0.48
CD44-206ENST00000415148 OVOS2A0A0J9YW53 1432 aa12.05□□□□□ -0.48
CD44-206ENST00000415148 OVOS2Q6IE36 1432 aa12.05□□□□□ -0.48
CD44-206ENST00000415148 NALCNQ8IZF0 1738 aa12.05□□□□□ -0.48
CD44-206ENST00000415148 REC8O95072 547 aa12.05□□□□□ -0.48
CD44-206ENST00000415148 USP31Q70CQ4 1352 aa12.05□□□□□ -0.48
CD44-206ENST00000415148 VSIG10Q8N0Z9 540 aa12.05□□□□□ -0.48
CD44-206ENST00000415148 TOPAZ1Q8N9V7 1692 aa12.05□□□□□ -0.48
CD44-206ENST00000415148 PRR36Q9H6K5 1346 aa12.05□□□□□ -0.48
CD44-206ENST00000415148 CRB1P82279 1406 aa12.04□□□□□ -0.48
CD44-206ENST00000415148 CYP2E1P05181 493 aaPredicted RBP12.04□□□□□ -0.48
CD44-206ENST00000415148 SDSP20132 328 aa12.04□□□□□ -0.48
CD44-206ENST00000415148 NASPP49321 788 aaPredicted RBP12.04□□□□□ -0.48
CD44-206ENST00000415148 KRT24Q2M2I5 525 aa12.04□□□□□ -0.48
CD44-206ENST00000415148 MCTP1Q6DN14 999 aa12.04□□□□□ -0.48
CD44-206ENST00000415148 DDX49Q9Y6V7 483 aaKnown RBP12.04□□□□□ -0.48
CD44-206ENST00000415148 SMARCA5O60264 1052 aaPredicted RBP12.04□□□□□ -0.48
CD44-206ENST00000415148 ST18O60284 1047 aa12.04□□□□□ -0.48
CD44-206ENST00000415148 ZGPATQ8N5A5 531 aaKnown RBP12.04□□□□□ -0.48
CD44-206ENST00000415148 NCKAP5LQ9HCH0 1330 aa12.03□□□□□ -0.48
CD44-206ENST00000415148 CCT4P50991 539 aaKnown RBP12.03□□□□□ -0.48
CD44-206ENST00000415148 PPP1R9BQ96SB3 815 aa12.03□□□□□ -0.48
CD44-206ENST00000415148 RBM27Q9P2N5 1060 aaKnown RBP12.03□□□□□ -0.48
CD44-206ENST00000415148 ARHGEF10O15013 1369 aa12.03□□□□□ -0.48
CD44-206ENST00000415148 MSH6P52701 1360 aa12.03□□□□□ -0.48
CD44-206ENST00000415148 APBB1O00213 710 aa12.03□□□□□ -0.48
CD44-206ENST00000415148 CAVIN1Q6NZI2 390 aaKnown RBP12.03□□□□□ -0.48
CD44-206ENST00000415148 AEBP1Q8IUX7 1158 aa12.03□□□□□ -0.48
CD44-206ENST00000415148 NCLP19338 710 aaKnown RBP12.02□□□□□ -0.49
CD44-206ENST00000415148 CCDC173Q0VFZ6 552 aa12.02□□□□□ -0.49
CD44-206ENST00000415148 RBSNQ9H1K0 784 aa12.02□□□□□ -0.49
CD44-206ENST00000415148 ACEP12821 1306 aa12.02□□□□□ -0.49
CD44-206ENST00000415148 ERC2O15083 957 aa12.01□□□□□ -0.49
CD44-206ENST00000415148 RRP9O43818 475 aaKnown RBP12.01□□□□□ -0.49
CD44-206ENST00000415148 SLC4A2P04920 1241 aa12.01□□□□□ -0.49
CD44-206ENST00000415148 ZNF445P59923 1031 aa12.01□□□□□ -0.49
CD44-206ENST00000415148 MCM10Q7L590 875 aa12.01□□□□□ -0.49
CD44-206ENST00000415148 LMBRD1Q9NUN5 540 aa12.01□□□□□ -0.49
CD44-206ENST00000415148 NSFL1CQ9UNZ2 370 aaKnown RBP12.01□□□□□ -0.49
CD44-206ENST00000415148 ZDHHC9Q9Y397 364 aa12.01□□□□□ -0.49
CD44-206ENST00000415148 USP6P35125 1406 aa12.01□□□□□ -0.49
CD44-206ENST00000415148 PEAK1Q9H792 1746 aa12.01□□□□□ -0.49
CD44-206ENST00000415148 KIAA1211Q6ZU35 1233 aa12.01□□□□□ -0.49
CD44-206ENST00000415148 MEIS3Q99687 375 aa12.01□□□□□ -0.49
CD44-206ENST00000415148 ZMYND15Q9H091 742 aa12.01□□□□□ -0.49
CD44-206ENST00000415148 ESF1Q9H501 851 aaKnown RBP12.01□□□□□ -0.49
CD44-206ENST00000415148 TMEM2Q9UHN6 1383 aa12.01□□□□□ -0.49
CD44-206ENST00000415148 HTATSF1O43719 755 aaKnown RBP12□□□□□ -0.49
CD44-206ENST00000415148 ZSCAN23Q3MJ62 389 aa12□□□□□ -0.49
CD44-206ENST00000415148 GPT2Q8TD30 523 aa12□□□□□ -0.49
CD44-206ENST00000415148 ANP32BQ92688 251 aaKnown RBP12□□□□□ -0.49
CD44-206ENST00000415148 EIF2AK3Q9NZJ5 1116 aaKnown RBP12□□□□□ -0.49
CD44-206ENST00000415148 SOS1Q07889 1333 aaPredicted RBP12□□□□□ -0.49
CD44-206ENST00000415148 TTC21AQ8NDW8 1320 aa12□□□□□ -0.49
CD44-206ENST00000415148 SIPA1L2Q9P2F8 1722 aaPredicted RBP12□□□□□ -0.49
CD44-206ENST00000415148 SSH2Q76I76 1423 aa12□□□□□ -0.49
CD44-206ENST00000415148 FOXD4L5Q5VV16 416 aaPredicted RBP12□□□□□ -0.49
CD44-206ENST00000415148 FOXD4L4Q8WXT5 416 aaPredicted RBP12□□□□□ -0.49
CD44-206ENST00000415148 ROBO2Q9HCK4 1378 aa12□□□□□ -0.49
CD44-206ENST00000415148 UBR1Q8IWV7 1749 aa12□□□□□ -0.49
CD44-206ENST00000415148 MCM2P49736 904 aa11.99□□□□□ -0.49
CD44-206ENST00000415148 RTF1Q92541 710 aaKnown RBP11.99□□□□□ -0.49
CD44-206ENST00000415148 PRIM1P49642 420 aaKnown RBP11.99□□□□□ -0.49
CD44-206ENST00000415148 PDE1AP54750 535 aa11.99□□□□□ -0.49
CD44-206ENST00000415148 HSP90AB2PQ58FF8 381 aa11.99□□□□□ -0.49
CD44-206ENST00000415148 TNRQ92752 1358 aa11.99□□□□□ -0.49
CD44-206ENST00000415148 ADAMTS13Q76LX8 1427 aa11.98□□□□□ -0.49
CD44-206ENST00000415148 PRPF40AO75400 957 aaKnown RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms