RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 PLEKHG3A1L390 1219 aa12.39□□□□□ -0.43
MSH2-202ENST00000406134 CHL1O00533 1208 aa12.39□□□□□ -0.43
MSH2-202ENST00000406134 TBC1D9Q6ZT07 1266 aa12.39□□□□□ -0.43
MSH2-202ENST00000406134 FSD2A1L4K1 749 aa12.38□□□□□ -0.43
MSH2-202ENST00000406134 INTS3Q68E01 1043 aaKnown RBP12.38□□□□□ -0.43
MSH2-202ENST00000406134 KDRP35968 1356 aa12.38□□□□□ -0.43
MSH2-202ENST00000406134 KIAA0232Q92628 1395 aa12.38□□□□□ -0.43
MSH2-202ENST00000406134 MCM4P33991 863 aa12.37□□□□□ -0.43
MSH2-202ENST00000406134 HSP90AB2PQ58FF8 381 aa12.37□□□□□ -0.43
MSH2-202ENST00000406134 ANKRD45Q5TZF3 282 aa12.37□□□□□ -0.43
MSH2-202ENST00000406134 RTL1A6NKG5 1358 aa12.37□□□□□ -0.43
MSH2-202ENST00000406134 CALD1Q05682 793 aaKnown RBP12.37□□□□□ -0.43
MSH2-202ENST00000406134 PLEKHM2Q8IWE5 1019 aa12.37□□□□□ -0.43
MSH2-202ENST00000406134 UBE2Q2Q8WVN8 375 aa12.37□□□□□ -0.43
MSH2-202ENST00000406134 KDM3BQ7LBC6 1761 aa12.36□□□□□ -0.43
MSH2-202ENST00000406134 SULT6B1Q6IMI4 303 aa12.36□□□□□ -0.43
MSH2-202ENST00000406134 MCM10Q7L590 875 aa12.36□□□□□ -0.43
MSH2-202ENST00000406134 ARHGEF10O15013 1369 aa12.36□□□□□ -0.43
MSH2-202ENST00000406134 MAP3K19Q56UN5 1328 aa12.36□□□□□ -0.43
MSH2-202ENST00000406134 RBM42Q9BTD8 480 aaKnown RBP12.36□□□□□ -0.43
MSH2-202ENST00000406134 DCTPP1Q9H773 170 aa12.36□□□□□ -0.43
MSH2-202ENST00000406134 MED1Q15648 1581 aaPredicted RBP12.35□□□□□ -0.43
MSH2-202ENST00000406134 C16orf71Q8IYS4 520 aaPredicted RBP12.35□□□□□ -0.43
MSH2-202ENST00000406134 OTUD7AQ8TE49 926 aaPredicted RBP12.35□□□□□ -0.43
MSH2-202ENST00000406134 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.35□□□□□ -0.43
MSH2-202ENST00000406134 FOXO3O43524 673 aa12.34□□□□□ -0.43
MSH2-202ENST00000406134 CHD2O14647 1828 aaKnown RBP12.34□□□□□ -0.43
MSH2-202ENST00000406134 LMOD3Q0VAK6 560 aa12.34□□□□□ -0.43
MSH2-202ENST00000406134 CHMP5Q9NZZ3 219 aa12.34□□□□□ -0.43
MSH2-202ENST00000406134 CEP85Q6P2H3 762 aa12.34□□□□□ -0.43
MSH2-202ENST00000406134 PHRF1Q9P1Y6 1649 aaKnown RBP12.33□□□□□ -0.44
MSH2-202ENST00000406134 CRYBG1Q9Y4K1 1723 aa12.33□□□□□ -0.44
MSH2-202ENST00000406134 ANKRD44Q8N8A2 993 aa12.33□□□□□ -0.44
MSH2-202ENST00000406134 API5Q9BZZ5 524 aaKnown RBP12.32□□□□□ -0.44
MSH2-202ENST00000406134 XRCC6P12956 609 aaKnown RBP eCLIP12.31□□□□□ -0.44
MSH2-202ENST00000406134 TTC22Q5TAA0 569 aa12.31□□□□□ -0.44
MSH2-202ENST00000406134 MEIS3Q99687 375 aa12.31□□□□□ -0.44
MSH2-202ENST00000406134 LMO7Q8WWI1 1683 aa12.31□□□□□ -0.44
MSH2-202ENST00000406134 NUTM2FA1L443 756 aa12.31□□□□□ -0.44
MSH2-202ENST00000406134 RAB3GAP1Q15042 981 aa12.31□□□□□ -0.44
MSH2-202ENST00000406134 MTHFSDQ2M296 383 aaKnown RBP12.31□□□□□ -0.44
MSH2-202ENST00000406134 IGSF1Q8N6C5 1336 aa12.31□□□□□ -0.44
MSH2-202ENST00000406134 SBNO1A3KN83 1393 aa12.31□□□□□ -0.44
MSH2-202ENST00000406134 G2E3Q7L622 706 aa12.31□□□□□ -0.44
MSH2-202ENST00000406134 TNPO1Q92973 898 aaKnown RBP12.31□□□□□ -0.44
MSH2-202ENST00000406134 SIPA1L3O60292 1781 aaPredicted RBP12.31□□□□□ -0.44
MSH2-202ENST00000406134 NFAT5O94916 1531 aa12.3□□□□□ -0.44
MSH2-202ENST00000406134 MIS18AQ9NYP9 233 aa12.3□□□□□ -0.44
MSH2-202ENST00000406134 SALL3Q9BXA9 1300 aa12.3□□□□□ -0.44
MSH2-202ENST00000406134 HSCBQ8IWL3 235 aa12.3□□□□□ -0.44
MSH2-202ENST00000406134 GAS2L2Q8NHY3 880 aa12.3□□□□□ -0.44
MSH2-202ENST00000406134 PANK2Q9BZ23 570 aa12.3□□□□□ -0.44
MSH2-202ENST00000406134 CEBPAP49715 358 aaPredicted RBP12.29□□□□□ -0.44
MSH2-202ENST00000406134 PTPRCP08575 1304 aa12.29□□□□□ -0.44
MSH2-202ENST00000406134 FLT4P35916 1363 aa12.29□□□□□ -0.44
MSH2-202ENST00000406134 SLC26A8Q96RN1 970 aa12.29□□□□□ -0.44
MSH2-202ENST00000406134 RRAGDQ9NQL2 400 aaPredicted RBP12.29□□□□□ -0.44
MSH2-202ENST00000406134 SMARCA5O60264 1052 aaPredicted RBP12.28□□□□□ -0.44
MSH2-202ENST00000406134 TRAK2O60296 914 aa12.28□□□□□ -0.44
MSH2-202ENST00000406134 CAMTA1Q9Y6Y1 1673 aa12.28□□□□□ -0.44
MSH2-202ENST00000406134 CDC45O75419 566 aa12.28□□□□□ -0.44
MSH2-202ENST00000406134 EYA1Q99502 592 aa12.28□□□□□ -0.44
MSH2-202ENST00000406134 TTC21AQ8NDW8 1320 aa12.27□□□□□ -0.44
MSH2-202ENST00000406134 USP26Q9BXU7 913 aa12.27□□□□□ -0.44
MSH2-202ENST00000406134 CLEC17AQ6ZS10 378 aa12.27□□□□□ -0.45
MSH2-202ENST00000406134 CHMP4BQ9H444 224 aaKnown RBP12.27□□□□□ -0.45
MSH2-202ENST00000406134 ZNF142P52746 1687 aaPredicted RBP12.26□□□□□ -0.45
MSH2-202ENST00000406134 K7ELQ4 463 aaPredicted RBP12.26□□□□□ -0.45
MSH2-202ENST00000406134 SDSP20132 328 aa12.26□□□□□ -0.45
MSH2-202ENST00000406134 FAM43AQ8N2R8 423 aa12.26□□□□□ -0.45
MSH2-202ENST00000406134 AMOTL2Q9Y2J4 779 aa12.26□□□□□ -0.45
MSH2-202ENST00000406134 ANKARQ7Z5J8 1434 aa12.26□□□□□ -0.45
MSH2-202ENST00000406134 SETD1BQ9UPS6 1966 aaKnown RBP12.25□□□□□ -0.45
MSH2-202ENST00000406134 CYP2E1P05181 493 aaPredicted RBP12.25□□□□□ -0.45
MSH2-202ENST00000406134 GAS2L3Q86XJ1 694 aa12.25□□□□□ -0.45
MSH2-202ENST00000406134 CIZ1Q9ULV3 898 aaPredicted RBP12.25□□□□□ -0.45
MSH2-202ENST00000406134 PXDNLA1KZ92 1463 aa12.25□□□□□ -0.45
MSH2-202ENST00000406134 F6X3S4 739 aa12.25□□□□□ -0.45
MSH2-202ENST00000406134 RPAP2Q8IXW5 612 aaPredicted RBP12.25□□□□□ -0.45
MSH2-202ENST00000406134 ADAMTS7Q9UKP4 1686 aa12.25□□□□□ -0.45
MSH2-202ENST00000406134 HDGFP51858 240 aaKnown RBP12.25□□□□□ -0.45
MSH2-202ENST00000406134 GZF1Q9H116 711 aaPredicted RBP12.25□□□□□ -0.45
MSH2-202ENST00000406134 RGPD5Q99666 1765 aa12.24□□□□□ -0.45
MSH2-202ENST00000406134 SLC4A2P04920 1241 aa12.24□□□□□ -0.45
MSH2-202ENST00000406134 OSBPL3Q9H4L5 887 aa12.24□□□□□ -0.45
MSH2-202ENST00000406134 SSFA2P28290 1259 aa12.23□□□□□ -0.45
MSH2-202ENST00000406134 TBX22Q9Y458 520 aa12.23□□□□□ -0.45
MSH2-202ENST00000406134 SOX12O15370 315 aa12.23□□□□□ -0.45
MSH2-202ENST00000406134 FOXD4L1Q9NU39 408 aa12.23□□□□□ -0.45
MSH2-202ENST00000406134 TRPM3Q9HCF6 1732 aaPredicted RBP12.23□□□□□ -0.45
MSH2-202ENST00000406134 PLEKHG5O94827 1062 aa12.23□□□□□ -0.45
MSH2-202ENST00000406134 PKP1Q13835 747 aa12.23□□□□□ -0.45
MSH2-202ENST00000406134 HOXC9P31274 260 aa12.22□□□□□ -0.45
MSH2-202ENST00000406134 DDX11L8A8MPP1 907 aa12.21□□□□□ -0.45
MSH2-202ENST00000406134 IL17REQ8NFR9 667 aa12.21□□□□□ -0.45
MSH2-202ENST00000406134 PNMA6EA0A0J9YXQ4 647 aa12.21□□□□□ -0.46
MSH2-202ENST00000406134 L1TD1Q5T7N2 865 aaKnown RBP12.21□□□□□ -0.46
MSH2-202ENST00000406134 ZDHHC9Q9Y397 364 aa12.2□□□□□ -0.46
MSH2-202ENST00000406134 CEMIPQ8WUJ3 1361 aa12.2□□□□□ -0.46
MSH2-202ENST00000406134 GOLGA6L3A6NEY3 463 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms