RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 LCE2AQ5TA79 106 aaPredicted RBP9.58□□□□□ -0.88
HMGB1P13-201ENST00000406019 WWC1Q8IX03 1113 aa9.58□□□□□ -0.88
HMGB1P13-201ENST00000406019 ZNF775Q96BV0 537 aaPredicted RBP9.58□□□□□ -0.88
HMGB1P13-201ENST00000406019 FOXD4L5Q5VV16 416 aaPredicted RBP9.57□□□□□ -0.88
HMGB1P13-201ENST00000406019 PLPP7Q8NBV4 271 aa9.57□□□□□ -0.88
HMGB1P13-201ENST00000406019 NFATC2IPQ8NCF5 419 aa9.57□□□□□ -0.88
HMGB1P13-201ENST00000406019 DOLKQ9UPQ8 538 aa9.57□□□□□ -0.88
HMGB1P13-201ENST00000406019 UPP2O95045 317 aa9.56□□□□□ -0.88
HMGB1P13-201ENST00000406019 LCE2CQ5TA81 110 aa9.56□□□□□ -0.88
HMGB1P13-201ENST00000406019 INSM2Q96T92 566 aaPredicted RBP9.56□□□□□ -0.88
HMGB1P13-201ENST00000406019 ZNF395Q9H8N7 513 aaPredicted RBP9.56□□□□□ -0.88
HMGB1P13-201ENST00000406019 ATP5J2-PTCD1G3V325 749 aa9.55□□□□□ -0.88
HMGB1P13-201ENST00000406019 MAP7D1Q3KQU3 841 aa9.55□□□□□ -0.88
HMGB1P13-201ENST00000406019 HDGFL1Q5TGJ6 251 aa9.55□□□□□ -0.88
HMGB1P13-201ENST00000406019 HOMEZQ8IX15 550 aa9.55□□□□□ -0.88
HMGB1P13-201ENST00000406019 RNF217Q8TC41 542 aa9.55□□□□□ -0.88
HMGB1P13-201ENST00000406019 TTLL8A6PVC2 850 aa9.54□□□□□ -0.88
HMGB1P13-201ENST00000406019 CYP2U1Q7Z449 544 aa9.54□□□□□ -0.88
HMGB1P13-201ENST00000406019 GLMNQ92990 594 aa9.54□□□□□ -0.88
HMGB1P13-201ENST00000406019 HRH3Q9Y5N1 445 aa9.54□□□□□ -0.88
HMGB1P13-201ENST00000406019 A0A1W2PRU2 124 aa9.52□□□□□ -0.89
HMGB1P13-201ENST00000406019 NFX1Q12986 1120 aaKnown RBP9.52□□□□□ -0.89
HMGB1P13-201ENST00000406019 TRIM52Q96A61 297 aa9.52□□□□□ -0.89
HMGB1P13-201ENST00000406019 IL2RAP01589 272 aa9.51□□□□□ -0.89
HMGB1P13-201ENST00000406019 RNF144AP50876 292 aaPredicted RBP9.51□□□□□ -0.89
HMGB1P13-201ENST00000406019 CLN3Q13286 438 aa9.51□□□□□ -0.89
HMGB1P13-201ENST00000406019 OXLD1Q5BKU9 147 aa9.51□□□□□ -0.89
HMGB1P13-201ENST00000406019 TBC1D9Q6ZT07 1266 aa9.51□□□□□ -0.89
HMGB1P13-201ENST00000406019 USP17L5A8MUK1 530 aa9.5□□□□□ -0.89
HMGB1P13-201ENST00000406019 STAU1O95793 577 aaKnown RBP9.5□□□□□ -0.89
HMGB1P13-201ENST00000406019 GNRH1P01148 92 aa9.5□□□□□ -0.89
HMGB1P13-201ENST00000406019 SKIP12755 728 aa9.5□□□□□ -0.89
HMGB1P13-201ENST00000406019 SCNN1DP51172 638 aa9.5□□□□□ -0.89
HMGB1P13-201ENST00000406019 PLEKHM2Q8IWE5 1019 aa9.5□□□□□ -0.89
HMGB1P13-201ENST00000406019 ARHGEF10LQ9HCE6 1279 aa9.5□□□□□ -0.89
HMGB1P13-201ENST00000406019 SUPT5HO00267 1087 aaKnown RBP9.49□□□□□ -0.89
HMGB1P13-201ENST00000406019 MAN1A2O60476 641 aa9.49□□□□□ -0.89
HMGB1P13-201ENST00000406019 MYCP01106 439 aaPredicted RBP9.49□□□□□ -0.89
HMGB1P13-201ENST00000406019 USP4Q13107 963 aa9.49□□□□□ -0.89
HMGB1P13-201ENST00000406019 XAGE2Q96GT9 111 aa9.49□□□□□ -0.89
HMGB1P13-201ENST00000406019 PCDHGA11Q9Y5H2 935 aa9.49□□□□□ -0.89
HMGB1P13-201ENST00000406019 FIGNL2A6NMB9 653 aa9.48□□□□□ -0.89
HMGB1P13-201ENST00000406019 TERTO14746 1132 aaKnown RBP9.48□□□□□ -0.89
HMGB1P13-201ENST00000406019 ATP9BO43861 1147 aa9.48□□□□□ -0.89
HMGB1P13-201ENST00000406019 GPC1P35052 558 aa9.48□□□□□ -0.89
HMGB1P13-201ENST00000406019 NCOA4Q13772 614 aa9.48□□□□□ -0.89
HMGB1P13-201ENST00000406019 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.48□□□□□ -0.89
HMGB1P13-201ENST00000406019 ETNK1Q9HBU6 452 aa9.48□□□□□ -0.89
HMGB1P13-201ENST00000406019 POLMQ9NP87 494 aaPredicted RBP9.48□□□□□ -0.89
HMGB1P13-201ENST00000406019 SENP3-EIF4A1A0A087X0R7 540 aa9.47□□□□□ -0.89
HMGB1P13-201ENST00000406019 H3BM21 787 aa9.47□□□□□ -0.89
HMGB1P13-201ENST00000406019 LZTS3O60299 673 aaPredicted RBP9.47□□□□□ -0.89
HMGB1P13-201ENST00000406019 FHDC1Q9C0D6 1143 aaPredicted RBP9.47□□□□□ -0.89
HMGB1P13-201ENST00000406019 GRIP2Q9C0E4 1043 aa9.47□□□□□ -0.89
HMGB1P13-201ENST00000406019 ZMYND15Q9H091 742 aa9.47□□□□□ -0.89
HMGB1P13-201ENST00000406019 RAB6BQ9NRW1 208 aa9.47□□□□□ -0.89
HMGB1P13-201ENST00000406019 NXF1Q9UBU9 619 aaKnown RBP9.47□□□□□ -0.89
HMGB1P13-201ENST00000406019 USP17L3A6NCW0 530 aa9.46□□□□□ -0.9
HMGB1P13-201ENST00000406019 USP17L4A6NCW7 530 aa9.46□□□□□ -0.9
HMGB1P13-201ENST00000406019 WASLO00401 505 aaPredicted RBP9.46□□□□□ -0.9
HMGB1P13-201ENST00000406019 USP17L2Q6R6M4 530 aa9.46□□□□□ -0.9
HMGB1P13-201ENST00000406019 TREML4Q6UXN2 200 aa9.46□□□□□ -0.9
HMGB1P13-201ENST00000406019 USP17L1Q7RTZ2 530 aa9.46□□□□□ -0.9
HMGB1P13-201ENST00000406019 NPAS3Q8IXF0 933 aa9.46□□□□□ -0.9
HMGB1P13-201ENST00000406019 ESYT1Q9BSJ8 1104 aa9.46□□□□□ -0.9
HMGB1P13-201ENST00000406019 SLC35F4A4IF30 521 aa9.45□□□□□ -0.9
HMGB1P13-201ENST00000406019 MEN1O00255 615 aa9.45□□□□□ -0.9
HMGB1P13-201ENST00000406019 PTSQ03393 145 aa9.45□□□□□ -0.9
HMGB1P13-201ENST00000406019 DEPDC4Q8N2C3 294 aa9.45□□□□□ -0.9
HMGB1P13-201ENST00000406019 SIRT1Q96EB6 747 aa9.45□□□□□ -0.9
HMGB1P13-201ENST00000406019 MAFBQ9Y5Q3 323 aaPredicted RBP9.45□□□□□ -0.9
HMGB1P13-201ENST00000406019 TMEM229AB2RXF0 380 aa9.44□□□□□ -0.9
HMGB1P13-201ENST00000406019 EML3Q32P44 896 aa9.44□□□□□ -0.9
HMGB1P13-201ENST00000406019 CNKSR1Q969H4 720 aa9.44□□□□□ -0.9
HMGB1P13-201ENST00000406019 ZNF777Q9ULD5 760 aaPredicted RBP9.44□□□□□ -0.9
HMGB1P13-201ENST00000406019 SPATA31C2B4DYI2 1134 aa9.43□□□□□ -0.9
HMGB1P13-201ENST00000406019 VSIG8P0DPA2 414 aa9.43□□□□□ -0.9
HMGB1P13-201ENST00000406019 ZNF295-AS1Q8N0V1 137 aa9.43□□□□□ -0.9
HMGB1P13-201ENST00000406019 PPP1R12CQ9BZL4 782 aa9.43□□□□□ -0.9
HMGB1P13-201ENST00000406019 TFIP11Q9UBB9 837 aaKnown RBP9.43□□□□□ -0.9
HMGB1P13-201ENST00000406019 ERBB4Q15303 1308 aa9.42□□□□□ -0.9
HMGB1P13-201ENST00000406019 PALM3A6NDB9 673 aaPredicted RBP9.42□□□□□ -0.9
HMGB1P13-201ENST00000406019 PPFIA3O75145 1194 aa9.42□□□□□ -0.9
HMGB1P13-201ENST00000406019 DKK1O94907 266 aa9.42□□□□□ -0.9
HMGB1P13-201ENST00000406019 VEGFBP49765 207 aa9.42□□□□□ -0.9
HMGB1P13-201ENST00000406019 CENPCQ03188 943 aa9.42□□□□□ -0.9
HMGB1P13-201ENST00000406019 LYSMD3Q7Z3D4 306 aa9.42□□□□□ -0.9
HMGB1P13-201ENST00000406019 CALR3Q96L12 384 aaKnown RBP9.42□□□□□ -0.9
HMGB1P13-201ENST00000406019 KIAA1024Q9UPX6 916 aa9.42□□□□□ -0.9
HMGB1P13-201ENST00000406019 ZBTB7BO15156 539 aaPredicted RBP9.41□□□□□ -0.9
HMGB1P13-201ENST00000406019 INHAP05111 366 aa9.41□□□□□ -0.9
HMGB1P13-201ENST00000406019 GDF10P55107 478 aa9.41□□□□□ -0.9
HMGB1P13-201ENST00000406019 GTF2IP78347 998 aa9.41□□□□□ -0.9
HMGB1P13-201ENST00000406019 CLDN10P78369 228 aa9.41□□□□□ -0.9
HMGB1P13-201ENST00000406019 CFAP70Q5T0N1 1121 aa9.41□□□□□ -0.9
HMGB1P13-201ENST00000406019 NOD1Q9Y239 953 aa9.41□□□□□ -0.9
HMGB1P13-201ENST00000406019 WFS1O76024 890 aa9.4□□□□□ -0.9
HMGB1P13-201ENST00000406019 CCDC155Q8N6L0 562 aa9.4□□□□□ -0.9
HMGB1P13-201ENST00000406019 NLRP3Q96P20 1036 aa9.4□□□□□ -0.9
HMGB1P13-201ENST00000406019 SLC4A9Q96Q91 983 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms