RNA–Protein interactions for RNA: ENST00000399042.4

BRCC3-206, Transcript of BRCA1/BRCA2-containing complex subunit 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene BRCC3, Length 954 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3-206ENST00000399042 VPS72Q15906 364 aa11.81□□□□□ -0.52
BRCC3-206ENST00000399042 AEBP1Q8IUX7 1158 aa11.81□□□□□ -0.52
BRCC3-206ENST00000399042 COL14A1Q05707 1796 aaKnown RBP11.81□□□□□ -0.52
BRCC3-206ENST00000399042 COL5A2P05997 1499 aaPredicted RBP11.81□□□□□ -0.52
BRCC3-206ENST00000399042 CAMTA1Q9Y6Y1 1673 aa11.81□□□□□ -0.52
BRCC3-206ENST00000399042 LTN1O94822 1766 aa11.8□□□□□ -0.52
BRCC3-206ENST00000399042 CRB1P82279 1406 aa11.8□□□□□ -0.52
BRCC3-206ENST00000399042 IL2RBP14784 551 aa11.8□□□□□ -0.52
BRCC3-206ENST00000399042 REM2Q8IYK8 340 aaPredicted RBP11.8□□□□□ -0.52
BRCC3-206ENST00000399042 ABCC6O95255 1503 aa11.8□□□□□ -0.52
BRCC3-206ENST00000399042 ABCA3Q99758 1704 aa11.8□□□□□ -0.52
BRCC3-206ENST00000399042 FAM98CQ17RN3 349 aaKnown RBP11.79□□□□□ -0.52
BRCC3-206ENST00000399042 PLEKHO1Q53GL0 409 aaPredicted RBP11.79□□□□□ -0.52
BRCC3-206ENST00000399042 PEAK1Q9H792 1746 aa11.79□□□□□ -0.52
BRCC3-206ENST00000399042 SLIT2O94813 1529 aa11.79□□□□□ -0.52
BRCC3-206ENST00000399042 SPATA31A5Q5VU36 1347 aa11.79□□□□□ -0.52
BRCC3-206ENST00000399042 SPATA31A7Q8IWB4 1347 aa11.79□□□□□ -0.52
BRCC3-206ENST00000399042 IGSF1Q8N6C5 1336 aa11.79□□□□□ -0.52
BRCC3-206ENST00000399042 CRYBG1Q9Y4K1 1723 aa11.78□□□□□ -0.52
BRCC3-206ENST00000399042 NEUROD2Q15784 382 aa11.78□□□□□ -0.52
BRCC3-206ENST00000399042 RUNDC1Q96C34 613 aa11.78□□□□□ -0.52
BRCC3-206ENST00000399042 GJD4Q96KN9 370 aaPredicted RBP11.78□□□□□ -0.52
BRCC3-206ENST00000399042 YTHDC1Q96MU7 727 aaKnown RBP11.78□□□□□ -0.52
BRCC3-206ENST00000399042 CDCA7Q9BWT1 371 aaPredicted RBP11.78□□□□□ -0.52
BRCC3-206ENST00000399042 SPG7Q9UQ90 795 aa11.78□□□□□ -0.52
BRCC3-206ENST00000399042 THRAP3Q9Y2W1 955 aaKnown RBP11.78□□□□□ -0.52
BRCC3-206ENST00000399042 SPATA31A1Q5TZJ5 1347 aa11.78□□□□□ -0.52
BRCC3-206ENST00000399042 BCL9LQ86UU0 1499 aa11.77□□□□□ -0.52
BRCC3-206ENST00000399042 SENP3-EIF4A1A0A087X0R7 540 aa11.77□□□□□ -0.53
BRCC3-206ENST00000399042 EXOC5O00471 708 aa11.77□□□□□ -0.53
BRCC3-206ENST00000399042 RXRBP28702 533 aa11.77□□□□□ -0.53
BRCC3-206ENST00000399042 AMOTQ4VCS5 1084 aa11.77□□□□□ -0.53
BRCC3-206ENST00000399042 C1orf141Q5JVX7 400 aa11.77□□□□□ -0.53
BRCC3-206ENST00000399042 RSPH6AQ9H0K4 717 aa11.77□□□□□ -0.53
BRCC3-206ENST00000399042 SALL2Q9Y467 1007 aaPredicted RBP11.77□□□□□ -0.53
BRCC3-206ENST00000399042 COL3A1P02461 1466 aaPredicted RBP11.76□□□□□ -0.53
BRCC3-206ENST00000399042 RBM6P78332 1123 aaKnown RBP11.76□□□□□ -0.53
BRCC3-206ENST00000399042 PDE3BQ13370 1112 aa11.76□□□□□ -0.53
BRCC3-206ENST00000399042 ZCRB1Q8TBF4 217 aaKnown RBP11.76□□□□□ -0.53
BRCC3-206ENST00000399042 DDX54Q8TDD1 881 aaKnown RBP11.76□□□□□ -0.53
BRCC3-206ENST00000399042 RTF1Q92541 710 aaKnown RBP11.76□□□□□ -0.53
BRCC3-206ENST00000399042 APAF1O14727 1248 aa11.75□□□□□ -0.53
BRCC3-206ENST00000399042 DDB1Q16531 1140 aa11.75□□□□□ -0.53
BRCC3-206ENST00000399042 ZNF530Q6P9A1 599 aaPredicted RBP11.75□□□□□ -0.53
BRCC3-206ENST00000399042 GAS2L2Q8NHY3 880 aa11.75□□□□□ -0.53
BRCC3-206ENST00000399042 RRP7AQ9Y3A4 280 aaKnown RBP11.75□□□□□ -0.53
BRCC3-206ENST00000399042 HNRNPUQ00839 825 aaKnown RBP eCLIP11.74□□□□□ -0.53
BRCC3-206ENST00000399042 BARGINQ6ZT62 677 aa11.74□□□□□ -0.53
BRCC3-206ENST00000399042 PROM2Q8N271 834 aa11.74□□□□□ -0.53
BRCC3-206ENST00000399042 PHACTR3Q96KR7 559 aa11.74□□□□□ -0.53
BRCC3-206ENST00000399042 PLCH1Q4KWH8 1693 aa11.74□□□□□ -0.53
BRCC3-206ENST00000399042 LMO7Q8WWI1 1683 aa11.74□□□□□ -0.53
BRCC3-206ENST00000399042 COL18A1P39060 1754 aa11.74□□□□□ -0.53
BRCC3-206ENST00000399042 RIPK4P57078 832 aa11.73□□□□□ -0.53
BRCC3-206ENST00000399042 SEPT12Q8IYM1 358 aa11.73□□□□□ -0.53
BRCC3-206ENST00000399042 ATRNO75882 1429 aa11.72□□□□□ -0.53
BRCC3-206ENST00000399042 KDRP35968 1356 aa11.72□□□□□ -0.53
BRCC3-206ENST00000399042 LMOD3Q0VAK6 560 aa11.72□□□□□ -0.53
BRCC3-206ENST00000399042 NFE2L2Q16236 605 aa11.72□□□□□ -0.53
BRCC3-206ENST00000399042 MTHFSDQ2M296 383 aaKnown RBP11.72□□□□□ -0.53
BRCC3-206ENST00000399042 IFNL2Q8IZJ0 200 aa11.72□□□□□ -0.53
BRCC3-206ENST00000399042 RGPD5Q99666 1765 aa11.72□□□□□ -0.53
BRCC3-206ENST00000399042 NWD2Q9ULI1 1742 aa11.72□□□□□ -0.53
BRCC3-206ENST00000399042 PCDH11XQ9BZA7 1347 aa11.71□□□□□ -0.53
BRCC3-206ENST00000399042 PCDH11YQ9BZA8 1340 aa11.71□□□□□ -0.53
BRCC3-206ENST00000399042 HSP90AB1P08238 724 aaKnown RBP11.71□□□□□ -0.53
BRCC3-206ENST00000399042 PLEKHF1Q96S99 279 aa11.71□□□□□ -0.53
BRCC3-206ENST00000399042 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.71□□□□□ -0.53
BRCC3-206ENST00000399042 GNAT3A8MTJ3 354 aa11.7□□□□□ -0.54
BRCC3-206ENST00000399042 TMPOP42166 694 aaKnown RBP11.7□□□□□ -0.54
BRCC3-206ENST00000399042 AKAP4Q5JQC9 854 aa11.7□□□□□ -0.54
BRCC3-206ENST00000399042 POTEAQ6S8J7 498 aa11.7□□□□□ -0.54
BRCC3-206ENST00000399042 MPRIPQ6WCQ1 1025 aa11.69□□□□□ -0.54
BRCC3-206ENST00000399042 SYTL4Q96C24 671 aaPredicted RBP11.69□□□□□ -0.54
BRCC3-206ENST00000399042 RGS17Q9UGC6 210 aaPredicted RBP11.69□□□□□ -0.54
BRCC3-206ENST00000399042 MEGF6O75095 1541 aa11.69□□□□□ -0.54
BRCC3-206ENST00000399042 OVOS2A0A0G2JMS6 1433 aa11.69□□□□□ -0.54
BRCC3-206ENST00000399042 FAM208AQ9UK61 1670 aaKnown RBP11.68□□□□□ -0.54
BRCC3-206ENST00000399042 CALD1Q05682 793 aaKnown RBP11.68□□□□□ -0.54
BRCC3-206ENST00000399042 KRT27Q7Z3Y8 459 aa11.68□□□□□ -0.54
BRCC3-206ENST00000399042 LAS1LQ9Y4W2 734 aaKnown RBP11.68□□□□□ -0.54
BRCC3-206ENST00000399042 NRAPQ86VF7 1730 aa11.67□□□□□ -0.54
BRCC3-206ENST00000399042 PHKG2P15735 406 aa11.67□□□□□ -0.54
BRCC3-206ENST00000399042 CABP4P57796 275 aa11.67□□□□□ -0.54
BRCC3-206ENST00000399042 TEFQ10587 303 aa11.67□□□□□ -0.54
BRCC3-206ENST00000399042 MCM10Q7L590 875 aa11.67□□□□□ -0.54
BRCC3-206ENST00000399042 NGEFQ8N5V2 710 aa11.67□□□□□ -0.54
BRCC3-206ENST00000399042 DCAF5Q96JK2 942 aa11.67□□□□□ -0.54
BRCC3-206ENST00000399042 MAP3K5Q99683 1374 aa11.67□□□□□ -0.54
BRCC3-206ENST00000399042 PITPNM1O00562 1244 aa11.66□□□□□ -0.54
BRCC3-206ENST00000399042 CYP27B1O15528 508 aa11.66□□□□□ -0.54
BRCC3-206ENST00000399042 HTATSF1O43719 755 aaKnown RBP11.66□□□□□ -0.54
BRCC3-206ENST00000399042 ONECUT3O60422 494 aaPredicted RBP11.66□□□□□ -0.54
BRCC3-206ENST00000399042 DCTN1Q14203 1278 aa11.66□□□□□ -0.54
BRCC3-206ENST00000399042 NCAPD2Q15021 1401 aa11.66□□□□□ -0.54
BRCC3-206ENST00000399042 RGPD2P0DJD1 1756 aa11.65□□□□□ -0.54
BRCC3-206ENST00000399042 FAM182BQ5T319 152 aa11.65□□□□□ -0.54
BRCC3-206ENST00000399042 SPDYE1Q8NFV5 336 aaPredicted RBP11.65□□□□□ -0.54
BRCC3-206ENST00000399042 PLEKHG2Q9H7P9 1386 aa11.65□□□□□ -0.55
BRCC3-206ENST00000399042 RGPD1P0DJD0 1748 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms