RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 POLR3AO14802 1390 aaPredicted RBP13.12□□□□□ -0.31
HPS4-202ENST00000398145 DCTN1Q14203 1278 aa13.12□□□□□ -0.31
HPS4-202ENST00000398145 NFXL1Q6ZNB6 911 aa13.11□□□□□ -0.31
HPS4-202ENST00000398145 CEP57L1Q8IYX8 460 aa13.11□□□□□ -0.31
HPS4-202ENST00000398145 ARHGEF12Q9NZN5 1544 aa13.11□□□□□ -0.31
HPS4-202ENST00000398145 ADCY5O95622 1261 aa13.11□□□□□ -0.31
HPS4-202ENST00000398145 UVSSAQ2YD98 709 aa13.11□□□□□ -0.31
HPS4-202ENST00000398145 CCDC83Q8IWF9 413 aa13.11□□□□□ -0.31
HPS4-202ENST00000398145 INSRP06213 1382 aa13.11□□□□□ -0.31
HPS4-202ENST00000398145 WASHC4Q2M389 1173 aa13.11□□□□□ -0.31
HPS4-202ENST00000398145 SCAND2PQ9GZW5 306 aaPredicted RBP13.11□□□□□ -0.31
HPS4-202ENST00000398145 RTEL1-TNFRSF6BF6WH68 1400 aa13.11□□□□□ -0.31
HPS4-202ENST00000398145 DHX16O60231 1041 aaKnown RBP13.1□□□□□ -0.31
HPS4-202ENST00000398145 PODXL2Q9NZ53 605 aa13.1□□□□□ -0.31
HPS4-202ENST00000398145 LIMCH1Q9UPQ0 1083 aa13.1□□□□□ -0.31
HPS4-202ENST00000398145 TAF3Q5VWG9 929 aa13.1□□□□□ -0.31
HPS4-202ENST00000398145 NUTM1Q86Y26 1132 aa13.1□□□□□ -0.31
HPS4-202ENST00000398145 SPATA31E1Q6ZUB1 1445 aa13.1□□□□□ -0.31
HPS4-202ENST00000398145 CAMK4Q16566 473 aa13.1□□□□□ -0.31
HPS4-202ENST00000398145 TXNDC2Q86VQ3 553 aa13.1□□□□□ -0.31
HPS4-202ENST00000398145 KIF1BPQ96EK5 621 aa13.1□□□□□ -0.31
HPS4-202ENST00000398145 UHRF1BP1Q6BDS2 1440 aa13.1□□□□□ -0.31
HPS4-202ENST00000398145 PRIM1P49642 420 aaKnown RBP13.09□□□□□ -0.31
HPS4-202ENST00000398145 DNAJC2Q99543 621 aaKnown RBP13.09□□□□□ -0.31
HPS4-202ENST00000398145 GLRX3O76003 335 aaKnown RBP13.09□□□□□ -0.31
HPS4-202ENST00000398145 TMX3Q96JJ7 454 aa13.09□□□□□ -0.31
HPS4-202ENST00000398145 SH2B1Q9NRF2 756 aaPredicted RBP13.09□□□□□ -0.31
HPS4-202ENST00000398145 PTPN14Q15678 1187 aa13.09□□□□□ -0.31
HPS4-202ENST00000398145 SERPINC1P01008 464 aa13.09□□□□□ -0.31
HPS4-202ENST00000398145 MCM10Q7L590 875 aa13.09□□□□□ -0.31
HPS4-202ENST00000398145 KIF2AO00139 706 aaPredicted RBP13.08□□□□□ -0.32
HPS4-202ENST00000398145 SDSP20132 328 aa13.08□□□□□ -0.32
HPS4-202ENST00000398145 NUTM2GQ5VZR2 741 aa13.08□□□□□ -0.32
HPS4-202ENST00000398145 ZBTB40Q9NUA8 1239 aa13.08□□□□□ -0.32
HPS4-202ENST00000398145 HCLS1P14317 486 aaPredicted RBP13.08□□□□□ -0.32
HPS4-202ENST00000398145 JMYQ8N9B5 988 aa13.08□□□□□ -0.32
HPS4-202ENST00000398145 CCDC61Q9Y6R9 512 aa13.08□□□□□ -0.32
HPS4-202ENST00000398145 PZPP20742 1482 aa13.08□□□□□ -0.32
HPS4-202ENST00000398145 KRT32Q14532 448 aa13.08□□□□□ -0.32
HPS4-202ENST00000398145 PCMTD1Q96MG8 357 aaPredicted RBP13.08□□□□□ -0.32
HPS4-202ENST00000398145 UBE2HP62256 183 aa13.07□□□□□ -0.32
HPS4-202ENST00000398145 PPP4R3BQ5MIZ7 849 aa13.07□□□□□ -0.32
HPS4-202ENST00000398145 AACSQ86V21 672 aa13.07□□□□□ -0.32
HPS4-202ENST00000398145 ZMYM4Q5VZL5 1548 aa13.07□□□□□ -0.32
HPS4-202ENST00000398145 STX6O43752 255 aa13.07□□□□□ -0.32
HPS4-202ENST00000398145 RAB11FIP3O75154 756 aa13.07□□□□□ -0.32
HPS4-202ENST00000398145 RBM25P49756 843 aaKnown RBP13.07□□□□□ -0.32
HPS4-202ENST00000398145 ERCC4Q92889 916 aaPredicted RBP13.07□□□□□ -0.32
HPS4-202ENST00000398145 PSME1Q06323 249 aa13.07□□□□□ -0.32
HPS4-202ENST00000398145 KIF18AQ8NI77 898 aa13.07□□□□□ -0.32
HPS4-202ENST00000398145 UBXN4Q92575 508 aa13.07□□□□□ -0.32
HPS4-202ENST00000398145 AK7Q96M32 723 aa13.07□□□□□ -0.32
HPS4-202ENST00000398145 MIS18AQ9NYP9 233 aa13.07□□□□□ -0.32
HPS4-202ENST00000398145 PTPRCP08575 1304 aa13.07□□□□□ -0.32
HPS4-202ENST00000398145 F6X3S4 739 aa13.07□□□□□ -0.32
HPS4-202ENST00000398145 TNNT1P13805 278 aa13.07□□□□□ -0.32
HPS4-202ENST00000398145 C16orf45Q96MC5 204 aaPredicted RBP13.07□□□□□ -0.32
HPS4-202ENST00000398145 ZHX1Q9UKY1 873 aaPredicted RBP13.07□□□□□ -0.32
HPS4-202ENST00000398145 NOLC1Q14978 699 aaKnown RBP eCLIP13.06□□□□□ -0.32
HPS4-202ENST00000398145 PRPF40BQ6NWY9 871 aaKnown RBP13.06□□□□□ -0.32
HPS4-202ENST00000398145 C14orf93Q9H972 538 aaKnown RBP13.06□□□□□ -0.32
HPS4-202ENST00000398145 URB2Q14146 1524 aaKnown RBP13.06□□□□□ -0.32
HPS4-202ENST00000398145 LEKR1Q6ZMV7 388 aa13.06□□□□□ -0.32
HPS4-202ENST00000398145 MBIPQ9NS73 344 aa13.06□□□□□ -0.32
HPS4-202ENST00000398145 EMILIN1Q9Y6C2 1016 aa13.06□□□□□ -0.32
HPS4-202ENST00000398145 GRIN2AQ12879 1464 aa13.06□□□□□ -0.32
HPS4-202ENST00000398145 COL17A1Q9UMD9 1497 aaPredicted RBP13.06□□□□□ -0.32
HPS4-202ENST00000398145 ERICH2A1L162 156 aa13.06□□□□□ -0.32
HPS4-202ENST00000398145 CCDC47Q96A33 483 aaKnown RBP13.06□□□□□ -0.32
HPS4-202ENST00000398145 FAM135AQ9P2D6 1515 aa13.05□□□□□ -0.32
HPS4-202ENST00000398145 RAPGEF4Q8WZA2 1011 aa13.05□□□□□ -0.32
HPS4-202ENST00000398145 RUFY1Q96T51 708 aa13.05□□□□□ -0.32
HPS4-202ENST00000398145 SIL1Q9H173 461 aa13.05□□□□□ -0.32
HPS4-202ENST00000398145 LAMC3Q9Y6N6 1575 aa13.05□□□□□ -0.32
HPS4-202ENST00000398145 BLMP54132 1417 aaPredicted RBP13.05□□□□□ -0.32
HPS4-202ENST00000398145 CKAP2LQ8IYA6 745 aa13.05□□□□□ -0.32
HPS4-202ENST00000398145 CGNQ9P2M7 1197 aaKnown RBP13.05□□□□□ -0.32
HPS4-202ENST00000398145 CLIP2Q9UDT6 1046 aa13.05□□□□□ -0.32
HPS4-202ENST00000398145 CARD14Q9BXL6 1004 aa13.04□□□□□ -0.32
HPS4-202ENST00000398145 DDX19AQ9NUU7 478 aaKnown RBP13.04□□□□□ -0.32
HPS4-202ENST00000398145 NUP153P49790 1475 aaKnown RBP13.04□□□□□ -0.32
HPS4-202ENST00000398145 SFPQP23246 707 aaKnown RBP eCLIP13.04□□□□□ -0.32
HPS4-202ENST00000398145 FAM177A1Q8N128 213 aaPredicted RBP13.04□□□□□ -0.32
HPS4-202ENST00000398145 ANKRD44Q8N8A2 993 aa13.04□□□□□ -0.32
HPS4-202ENST00000398145 ABTB2Q8N961 1025 aa13.04□□□□□ -0.32
HPS4-202ENST00000398145 ERICH4A6NGS2 130 aa13.04□□□□□ -0.32
HPS4-202ENST00000398145 FILIP1LQ4L180 1135 aa13.04□□□□□ -0.32
HPS4-202ENST00000398145 PLEKHO1Q53GL0 409 aaPredicted RBP13.04□□□□□ -0.32
HPS4-202ENST00000398145 DDX11Q96FC9 970 aa13.04□□□□□ -0.32
HPS4-202ENST00000398145 MARCH6O60337 910 aa13.03□□□□□ -0.32
HPS4-202ENST00000398145 TTLL5Q6EMB2 1281 aa13.03□□□□□ -0.32
HPS4-202ENST00000398145 ZNF830Q96NB3 372 aaPredicted RBP13.03□□□□□ -0.32
HPS4-202ENST00000398145 ANKRD36BQ8N2N9 1353 aa13.03□□□□□ -0.32
HPS4-202ENST00000398145 CBFA2T2O43439 604 aa13.03□□□□□ -0.32
HPS4-202ENST00000398145 NPC1L1Q9UHC9 1359 aa13.03□□□□□ -0.32
HPS4-202ENST00000398145 ANAPC15P60006 121 aa13.03□□□□□ -0.32
HPS4-202ENST00000398145 NUDT16Q96DE0 195 aaKnown RBP13.03□□□□□ -0.32
HPS4-202ENST00000398145 ANO10Q9NW15 660 aa13.03□□□□□ -0.32
HPS4-202ENST00000398145 NOS1P29475 1434 aa13.03□□□□□ -0.32
HPS4-202ENST00000398145 NEMFO60524 1076 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms