RNA–Protein interactions for RNA: ENST00000397004.8

NUP98-204, Transcript of nucleoporin 98, humanhuman

TSL 1 (best) BASIC

Gene NUP98, Length 3,923 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98-204ENST00000397004 MSH6P52701 1360 aa17.24■□□□□ 0.35
NUP98-204ENST00000397004 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.24■□□□□ 0.35
NUP98-204ENST00000397004 NASPP49321 788 aaPredicted RBP17.24■□□□□ 0.35
NUP98-204ENST00000397004 MCM10Q7L590 875 aa17.24■□□□□ 0.35
NUP98-204ENST00000397004 RBM27Q9P2N5 1060 aaKnown RBP17.24■□□□□ 0.35
NUP98-204ENST00000397004 RTL1A6NKG5 1358 aa17.24■□□□□ 0.35
NUP98-204ENST00000397004 RBSNQ9H1K0 784 aa17.23■□□□□ 0.35
NUP98-204ENST00000397004 METP08581 1390 aa17.23■□□□□ 0.35
NUP98-204ENST00000397004 EDC4Q6P2E9 1401 aaKnown RBP17.23■□□□□ 0.35
NUP98-204ENST00000397004 NRXN3Q9Y4C0 1643 aa17.23■□□□□ 0.35
NUP98-204ENST00000397004 API5Q9BZZ5 524 aaKnown RBP17.23■□□□□ 0.35
NUP98-204ENST00000397004 AATKQ6ZMQ8 1374 aa17.22■□□□□ 0.35
NUP98-204ENST00000397004 ZSCAN23Q3MJ62 389 aa17.22■□□□□ 0.35
NUP98-204ENST00000397004 CAVIN1Q6NZI2 390 aaKnown RBP17.22■□□□□ 0.35
NUP98-204ENST00000397004 A2ML1A8K2U0 1454 aa17.22■□□□□ 0.35
NUP98-204ENST00000397004 IBTKQ9P2D0 1353 aaPredicted RBP17.22■□□□□ 0.35
NUP98-204ENST00000397004 RABEP1Q15276 862 aa17.22■□□□□ 0.35
NUP98-204ENST00000397004 DLC1Q96QB1 1528 aa17.22■□□□□ 0.35
NUP98-204ENST00000397004 WASLO00401 505 aaPredicted RBP17.21■□□□□ 0.35
NUP98-204ENST00000397004 TSHZ3Q63HK5 1081 aa17.21■□□□□ 0.35
NUP98-204ENST00000397004 MIS18AQ9NYP9 233 aa17.21■□□□□ 0.35
NUP98-204ENST00000397004 ZNF445P59923 1031 aa17.21■□□□□ 0.35
NUP98-204ENST00000397004 PRR36Q9H6K5 1346 aa17.2■□□□□ 0.34
NUP98-204ENST00000397004 PRIM1P49642 420 aaKnown RBP17.2■□□□□ 0.34
NUP98-204ENST00000397004 TXNDC2Q86VQ3 553 aa17.2■□□□□ 0.34
NUP98-204ENST00000397004 CHL1O00533 1208 aa17.2■□□□□ 0.34
NUP98-204ENST00000397004 CALD1Q05682 793 aaKnown RBP17.2■□□□□ 0.34
NUP98-204ENST00000397004 EIF4A2Q14240 407 aaKnown RBP17.2■□□□□ 0.34
NUP98-204ENST00000397004 G2E3Q7L622 706 aa17.2■□□□□ 0.34
NUP98-204ENST00000397004 KIF24Q5T7B8 1368 aa17.2■□□□□ 0.34
NUP98-204ENST00000397004 TRIM44Q96DX7 344 aaPredicted RBP17.19■□□□□ 0.34
NUP98-204ENST00000397004 C3P01024 1663 aa17.19■□□□□ 0.34
NUP98-204ENST00000397004 NUDT16Q96DE0 195 aaKnown RBP17.18■□□□□ 0.34
NUP98-204ENST00000397004 MON2Q7Z3U7 1717 aa17.18■□□□□ 0.34
NUP98-204ENST00000397004 SULT6B1Q6IMI4 303 aa17.18■□□□□ 0.34
NUP98-204ENST00000397004 CCDC173Q0VFZ6 552 aa17.18■□□□□ 0.34
NUP98-204ENST00000397004 TMEM63CQ9P1W3 806 aa17.18■□□□□ 0.34
NUP98-204ENST00000397004 F6X3S4 739 aa17.17■□□□□ 0.34
NUP98-204ENST00000397004 PRPF40AO75400 957 aaKnown RBP17.17■□□□□ 0.34
NUP98-204ENST00000397004 CHMP4BQ9H444 224 aaKnown RBP17.17■□□□□ 0.34
NUP98-204ENST00000397004 FOXO3O43524 673 aa17.17■□□□□ 0.34
NUP98-204ENST00000397004 UBR1Q8IWV7 1749 aa17.17■□□□□ 0.34
NUP98-204ENST00000397004 PEAK1Q9H792 1746 aa17.17■□□□□ 0.34
NUP98-204ENST00000397004 FOXD4L5Q5VV16 416 aaPredicted RBP17.16■□□□□ 0.34
NUP98-204ENST00000397004 FOXD4L4Q8WXT5 416 aaPredicted RBP17.16■□□□□ 0.34
NUP98-204ENST00000397004 PALD1Q9ULE6 856 aa17.16■□□□□ 0.34
NUP98-204ENST00000397004 TUBGCP6Q96RT7 1819 aa17.16■□□□□ 0.34
NUP98-204ENST00000397004 CRB1P82279 1406 aa17.16■□□□□ 0.34
NUP98-204ENST00000397004 NRKQ7Z2Y5 1582 aa17.15■□□□□ 0.34
NUP98-204ENST00000397004 HSP90AA2PQ14568 343 aaPredicted RBP17.15■□□□□ 0.34
NUP98-204ENST00000397004 HSP90AB2PQ58FF8 381 aa17.15■□□□□ 0.34
NUP98-204ENST00000397004 ZSCAN30Q86W11 494 aa17.15■□□□□ 0.34
NUP98-204ENST00000397004 PDLIM2Q96JY6 352 aa17.15■□□□□ 0.34
NUP98-204ENST00000397004 IL25Q9H293 177 aa17.15■□□□□ 0.34
NUP98-204ENST00000397004 NCLP19338 710 aaKnown RBP17.15■□□□□ 0.34
NUP98-204ENST00000397004 RPAP2Q8IXW5 612 aaPredicted RBP17.15■□□□□ 0.34
NUP98-204ENST00000397004 COG3Q96JB2 828 aa17.15■□□□□ 0.34
NUP98-204ENST00000397004 RIMS1Q86UR5 1692 aaKnown RBP17.15■□□□□ 0.34
NUP98-204ENST00000397004 SALL3Q9BXA9 1300 aa17.15■□□□□ 0.34
NUP98-204ENST00000397004 KIAA1211Q6ZU35 1233 aa17.14■□□□□ 0.33
NUP98-204ENST00000397004 STAG3Q9UJ98 1225 aa17.14■□□□□ 0.33
NUP98-204ENST00000397004 AKAP12Q02952 1782 aa17.13■□□□□ 0.33
NUP98-204ENST00000397004 SLC4A2P04920 1241 aa17.13■□□□□ 0.33
NUP98-204ENST00000397004 NUCB2P80303 420 aa17.13■□□□□ 0.33
NUP98-204ENST00000397004 RRP9O43818 475 aaKnown RBP17.13■□□□□ 0.33
NUP98-204ENST00000397004 PTMSP20962 102 aa17.13■□□□□ 0.33
NUP98-204ENST00000397004 PDE1AP54750 535 aa17.13■□□□□ 0.33
NUP98-204ENST00000397004 MLECQ14165 292 aa17.13■□□□□ 0.33
NUP98-204ENST00000397004 LMOD3Q0VAK6 560 aa17.12■□□□□ 0.33
NUP98-204ENST00000397004 FER1L4A9Z1Z3 1794 aa17.12■□□□□ 0.33
NUP98-204ENST00000397004 CCDC61Q9Y6R9 512 aa17.12■□□□□ 0.33
NUP98-204ENST00000397004 RGPD1P0DJD0 1748 aa17.12■□□□□ 0.33
NUP98-204ENST00000397004 EXOC6BQ9Y2D4 811 aa17.12■□□□□ 0.33
NUP98-204ENST00000397004 GOLGA6L22H0YM25 854 aa17.11■□□□□ 0.33
NUP98-204ENST00000397004 OFD1O75665 1012 aa17.11■□□□□ 0.33
NUP98-204ENST00000397004 UNC5CLQ8IV45 518 aa17.11■□□□□ 0.33
NUP98-204ENST00000397004 TMX3Q96JJ7 454 aa17.11■□□□□ 0.33
NUP98-204ENST00000397004 KIAA0232Q92628 1395 aa17.1■□□□□ 0.33
NUP98-204ENST00000397004 OSBPL3Q9H4L5 887 aa17.1■□□□□ 0.33
NUP98-204ENST00000397004 SYCE3A1L190 88 aa17.1■□□□□ 0.33
NUP98-204ENST00000397004 PNMA6EA0A0J9YXQ4 647 aa17.1■□□□□ 0.33
NUP98-204ENST00000397004 NUTM2FA1L443 756 aa17.09■□□□□ 0.33
NUP98-204ENST00000397004 ERC2O15083 957 aa17.09■□□□□ 0.33
NUP98-204ENST00000397004 XPCQ01831 940 aaPredicted RBP17.08■□□□□ 0.33
NUP98-204ENST00000397004 CWC22Q9HCG8 908 aaKnown RBP17.08■□□□□ 0.33
NUP98-204ENST00000397004 NEK4P51957 841 aa17.08■□□□□ 0.32
NUP98-204ENST00000397004 SLC4A10Q6U841 1118 aa17.08■□□□□ 0.32
NUP98-204ENST00000397004 NOL7Q9UMY1 257 aaKnown RBP17.08■□□□□ 0.32
NUP98-204ENST00000397004 PTPRCP08575 1304 aa17.08■□□□□ 0.32
NUP98-204ENST00000397004 MAP3K19Q56UN5 1328 aa17.08■□□□□ 0.32
NUP98-204ENST00000397004 MTHFSDQ2M296 383 aaKnown RBP17.07■□□□□ 0.32
NUP98-204ENST00000397004 ROBO2Q9HCK4 1378 aa17.07■□□□□ 0.32
NUP98-204ENST00000397004 OVOS2A0A0J9YW53 1432 aa17.07■□□□□ 0.32
NUP98-204ENST00000397004 OVOS2Q6IE36 1432 aa17.07■□□□□ 0.32
NUP98-204ENST00000397004 SOX12O15370 315 aa17.07■□□□□ 0.32
NUP98-204ENST00000397004 ST18O60284 1047 aa17.06■□□□□ 0.32
NUP98-204ENST00000397004 NOL8Q76FK4 1167 aaKnown RBP17.06■□□□□ 0.32
NUP98-204ENST00000397004 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.06■□□□□ 0.32
NUP98-204ENST00000397004 TTC21BQ7Z4L5 1316 aa17.06■□□□□ 0.32
NUP98-204ENST00000397004 BRD1O95696 1058 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms