RNA–Protein interactions for RNA: ENST00000396914.3

CHCHD4-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHCHD4, Length 1,405 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD4-202ENST00000396914 PRKRIP1Q9H875 184 aaPredicted RBP39.44■■■■□ 3.9
CHCHD4-202ENST00000396914 MYBBP1AQ9BQG0 1328 aaKnown RBP39.43■■■■□ 3.9
CHCHD4-202ENST00000396914 AEBP1Q8IUX7 1158 aa39.43■■■■□ 3.9
CHCHD4-202ENST00000396914 EP400Q96L91 3159 aa39.43■■■■□ 3.9
CHCHD4-202ENST00000396914 NUDCQ9Y266 331 aa39.42■■■■□ 3.9
CHCHD4-202ENST00000396914 HMOX1P09601 288 aa39.41■■■■□ 3.9
CHCHD4-202ENST00000396914 RGPD1P0DJD0 1748 aa39.4■■■■□ 3.9
CHCHD4-202ENST00000396914 SPG7Q9UQ90 795 aa39.39■■■■□ 3.9
CHCHD4-202ENST00000396914 SF3B2Q13435 895 aaKnown RBP39.38■■■■□ 3.89
CHCHD4-202ENST00000396914 TRIM37O94972 964 aa39.36■■■■□ 3.89
CHCHD4-202ENST00000396914 ANP32CO43423 234 aa39.35■■■■□ 3.89
CHCHD4-202ENST00000396914 PCDH11XQ9BZA7 1347 aa39.35■■■■□ 3.89
CHCHD4-202ENST00000396914 PCDH11YQ9BZA8 1340 aa39.35■■■■□ 3.89
CHCHD4-202ENST00000396914 CCDC125Q86Z20 511 aa39.33■■■■□ 3.89
CHCHD4-202ENST00000396914 KDRP35968 1356 aa39.32■■■■□ 3.88
CHCHD4-202ENST00000396914 U2AF1L5P0DN76 240 aaPredicted RBP39.31■■■■□ 3.88
CHCHD4-202ENST00000396914 U2AF1Q01081 240 aaKnown RBP eCLIP39.31■■■■□ 3.88
CHCHD4-202ENST00000396914 SHANK3Q9BYB0 1731 aa39.31■■■■□ 3.88
CHCHD4-202ENST00000396914 PLEKHO1Q53GL0 409 aaPredicted RBP39.31■■■■□ 3.88
CHCHD4-202ENST00000396914 PKD1L3Q7Z443 1732 aa39.29■■■■□ 3.88
CHCHD4-202ENST00000396914 ACSBG1Q96GR2 724 aa39.29■■■■□ 3.88
CHCHD4-202ENST00000396914 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP39.29■■■■□ 3.88
CHCHD4-202ENST00000396914 CYP27B1O15528 508 aa39.25■■■■□ 3.87
CHCHD4-202ENST00000396914 AMOTQ4VCS5 1084 aa39.25■■■■□ 3.87
CHCHD4-202ENST00000396914 BCL9O00512 1426 aa39.24■■■■□ 3.87
CHCHD4-202ENST00000396914 ZNF530Q6P9A1 599 aaPredicted RBP39.23■■■■□ 3.87
CHCHD4-202ENST00000396914 PLEKHG2Q9H7P9 1386 aa39.22■■■■□ 3.87
CHCHD4-202ENST00000396914 SBF2Q86WG5 1849 aa39.22■■■■□ 3.87
CHCHD4-202ENST00000396914 IFNL2Q8IZJ0 200 aa39.22■■■■□ 3.87
CHCHD4-202ENST00000396914 APBA3O96018 575 aa39.21■■■■□ 3.87
CHCHD4-202ENST00000396914 SYTL4Q96C24 671 aaPredicted RBP39.21■■■■□ 3.87
CHCHD4-202ENST00000396914 KAT6BQ8WYB5 2073 aa39.2■■■■□ 3.87
CHCHD4-202ENST00000396914 KCNQ2O43526 872 aa39.19■■■■□ 3.86
CHCHD4-202ENST00000396914 BCL11BQ9C0K0 894 aaPredicted RBP39.19■■■■□ 3.86
CHCHD4-202ENST00000396914 PHKG2P15735 406 aa39.18■■■■□ 3.86
CHCHD4-202ENST00000396914 PRKAR2BP31323 418 aa39.18■■■■□ 3.86
CHCHD4-202ENST00000396914 BAG6P46379 1132 aa39.18■■■■□ 3.86
CHCHD4-202ENST00000396914 C1orf141Q5JVX7 400 aa39.18■■■■□ 3.86
CHCHD4-202ENST00000396914 DEFB132Q7Z7B7 95 aa39.17■■■■□ 3.86
CHCHD4-202ENST00000396914 TNS1Q9HBL0 1735 aaKnown RBP39.16■■■■□ 3.86
CHCHD4-202ENST00000396914 PTF1AQ7RTS3 328 aa39.16■■■■□ 3.86
CHCHD4-202ENST00000396914 RSPH6AQ9H0K4 717 aa39.16■■■■□ 3.86
CHCHD4-202ENST00000396914 DOT1LQ8TEK3 1739 aa39.14■■■■□ 3.86
CHCHD4-202ENST00000396914 FCHSD2O94868 740 aa39.14■■■■□ 3.86
CHCHD4-202ENST00000396914 PRIM1P49642 420 aaKnown RBP39.14■■■■□ 3.86
CHCHD4-202ENST00000396914 NHSQ6T4R5 1651 aa39.13■■■■□ 3.85
CHCHD4-202ENST00000396914 WDR43Q15061 677 aaKnown RBP eCLIP39.12■■■■□ 3.85
CHCHD4-202ENST00000396914 MTHFSDQ2M296 383 aaKnown RBP39.11■■■■□ 3.85
CHCHD4-202ENST00000396914 NEFMP07197 916 aa39.1■■■■□ 3.85
CHCHD4-202ENST00000396914 HSP90AB1P08238 724 aaKnown RBP39.1■■■■□ 3.85
CHCHD4-202ENST00000396914 EN1Q05925 392 aaPredicted RBP39.1■■■■□ 3.85
CHCHD4-202ENST00000396914 NKX1-1Q15270 411 aaPredicted RBP39.1■■■■□ 3.85
CHCHD4-202ENST00000396914 AKAP4Q5JQC9 854 aa39.06■■■■□ 3.84
CHCHD4-202ENST00000396914 MPRIPQ6WCQ1 1025 aa39.06■■■■□ 3.84
CHCHD4-202ENST00000396914 PHACTR3Q96KR7 559 aa39.06■■■■□ 3.84
CHCHD4-202ENST00000396914 PNNQ9H307 717 aaKnown RBP39.06■■■■□ 3.84
CHCHD4-202ENST00000396914 GAS2L2Q8NHY3 880 aa39.05■■■■□ 3.84
CHCHD4-202ENST00000396914 DCAF5Q96JK2 942 aa39.05■■■■□ 3.84
CHCHD4-202ENST00000396914 TOGARAM1Q9Y4F4 1720 aa39.01■■■■□ 3.84
CHCHD4-202ENST00000396914 EZH2Q15910 746 aaKnown RBP39.01■■■■□ 3.84
CHCHD4-202ENST00000396914 CCDC184Q52MB2 194 aa39.01■■■■□ 3.84
CHCHD4-202ENST00000396914 MRS2Q9HD23 443 aa39.01■■■■□ 3.84
CHCHD4-202ENST00000396914 BTAF1O14981 1849 aa39.01■■■■□ 3.83
CHCHD4-202ENST00000396914 MAPK8IP3Q9UPT6 1336 aa39■■■■□ 3.83
CHCHD4-202ENST00000396914 TMOD3Q9NYL9 352 aa38.99■■■■□ 3.83
CHCHD4-202ENST00000396914 CAMKK2Q96RR4 588 aa38.97■■■■□ 3.83
CHCHD4-202ENST00000396914 KDM6AO15550 1401 aaPredicted RBP38.96■■■■□ 3.83
CHCHD4-202ENST00000396914 PLSCR1O15162 318 aa38.96■■■■□ 3.83
CHCHD4-202ENST00000396914 CABP4P57796 275 aa38.96■■■■□ 3.83
CHCHD4-202ENST00000396914 ADAMTS8Q9UP79 889 aa38.96■■■■□ 3.83
CHCHD4-202ENST00000396914 ITGB4P16144 1822 aa38.95■■■■□ 3.83
CHCHD4-202ENST00000396914 GNAT3A8MTJ3 354 aa38.95■■■■□ 3.83
CHCHD4-202ENST00000396914 ERVV-2B6SEH9 535 aa38.95■■■■□ 3.83
CHCHD4-202ENST00000396914 MAP3K5Q99683 1374 aa38.94■■■■□ 3.82
CHCHD4-202ENST00000396914 DIEXFQ68CQ4 756 aaKnown RBP38.94■■■■□ 3.82
CHCHD4-202ENST00000396914 PLEKHF1Q96S99 279 aa38.94■■■■□ 3.82
CHCHD4-202ENST00000396914 CCDC146Q8IYE0 955 aa38.93■■■■□ 3.82
CHCHD4-202ENST00000396914 PIGBQ92521 554 aa38.92■■■■□ 3.82
CHCHD4-202ENST00000396914 LGR6Q9HBX8 967 aa38.92■■■■□ 3.82
CHCHD4-202ENST00000396914 RNMTO43148 476 aaKnown RBP38.9■■■■□ 3.82
CHCHD4-202ENST00000396914 SCN11AQ9UI33 1791 aa38.88■■■■□ 3.81
CHCHD4-202ENST00000396914 RTF1Q92541 710 aaKnown RBP38.88■■■■□ 3.81
CHCHD4-202ENST00000396914 TXNRD1Q16881 649 aa38.87■■■■□ 3.81
CHCHD4-202ENST00000396914 NFATC2IPQ8NCF5 419 aa38.86■■■■□ 3.81
CHCHD4-202ENST00000396914 RGPD3A6NKT7 1758 aaPredicted RBP38.86■■■■□ 3.81
CHCHD4-202ENST00000396914 RGPD4Q7Z3J3 1758 aa38.86■■■■□ 3.81
CHCHD4-202ENST00000396914 NFE2L2Q16236 605 aa38.83■■■■□ 3.81
CHCHD4-202ENST00000396914 SMARCC1Q92922 1105 aaPredicted RBP38.83■■■■□ 3.81
CHCHD4-202ENST00000396914 RUNDC1Q96C34 613 aa38.83■■■■□ 3.81
CHCHD4-202ENST00000396914 VIRMAQ69YN4 1812 aaKnown RBP38.83■■■■□ 3.81
CHCHD4-202ENST00000396914 SLC52A2Q9HAB3 445 aa38.82■■■■□ 3.81
CHCHD4-202ENST00000396914 PROM2Q8N271 834 aa38.81■■■■□ 3.8
CHCHD4-202ENST00000396914 PALLDQ8WX93 1383 aa38.81■■■■□ 3.8
CHCHD4-202ENST00000396914 TEFQ10587 303 aa38.8■■■■□ 3.8
CHCHD4-202ENST00000396914 IL17REQ8NFR9 667 aa38.8■■■■□ 3.8
CHCHD4-202ENST00000396914 PNISRQ8TF01 805 aaKnown RBP38.8■■■■□ 3.8
CHCHD4-202ENST00000396914 ASAP1Q9ULH1 1129 aa38.8■■■■□ 3.8
CHCHD4-202ENST00000396914 RREB1Q92766 1687 aa38.8■■■■□ 3.8
CHCHD4-202ENST00000396914 MCM10Q7L590 875 aa38.79■■■■□ 3.8
CHCHD4-202ENST00000396914 NEUROD2Q15784 382 aa38.77■■■■□ 3.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms