RNA–Protein interactions for RNA: ENST00000396096.6

NUP50-202, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 1,895 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-202ENST00000396096 GAS2L2Q8NHY3 880 aa21.17■□□□□ 0.98
NUP50-202ENST00000396096 UPF2Q9HAU5 1272 aaKnown RBP21.17■□□□□ 0.98
NUP50-202ENST00000396096 RTL1A6NKG5 1358 aa21.17■□□□□ 0.98
NUP50-202ENST00000396096 RGS12O14924 1447 aa21.17■□□□□ 0.98
NUP50-202ENST00000396096 ADGRL3Q9HAR2 1447 aa21.17■□□□□ 0.98
NUP50-202ENST00000396096 HOXC9P31274 260 aa21.16■□□□□ 0.98
NUP50-202ENST00000396096 TBC1D32Q96NH3 1257 aa21.16■□□□□ 0.98
NUP50-202ENST00000396096 INTS3Q68E01 1043 aaKnown RBP21.15■□□□□ 0.98
NUP50-202ENST00000396096 SLC4A3P48751 1232 aa21.15■□□□□ 0.98
NUP50-202ENST00000396096 CHD1LQ86WJ1 897 aa21.15■□□□□ 0.98
NUP50-202ENST00000396096 PHF8Q9UPP1 1060 aa21.15■□□□□ 0.98
NUP50-202ENST00000396096 LTN1O94822 1766 aa21.14■□□□□ 0.97
NUP50-202ENST00000396096 PTPRCP08575 1304 aa21.14■□□□□ 0.97
NUP50-202ENST00000396096 RTF1Q92541 710 aaKnown RBP21.13■□□□□ 0.97
NUP50-202ENST00000396096 ABTB2Q8N961 1025 aa21.13■□□□□ 0.97
NUP50-202ENST00000396096 FOXO3O43524 673 aa21.12■□□□□ 0.97
NUP50-202ENST00000396096 NFAT5O94916 1531 aa21.12■□□□□ 0.97
NUP50-202ENST00000396096 PHRF1Q9P1Y6 1649 aaKnown RBP21.12■□□□□ 0.97
NUP50-202ENST00000396096 KRT24Q2M2I5 525 aa21.11■□□□□ 0.97
NUP50-202ENST00000396096 SIRT2Q8IXJ6 389 aa21.11■□□□□ 0.97
NUP50-202ENST00000396096 NPHP4O75161 1426 aaPredicted RBP21.11■□□□□ 0.97
NUP50-202ENST00000396096 BECN1Q14457 450 aa21.1■□□□□ 0.97
NUP50-202ENST00000396096 C1orf115Q9H7X2 142 aa21.09■□□□□ 0.97
NUP50-202ENST00000396096 LNPKQ9C0E8 428 aa21.09■□□□□ 0.97
NUP50-202ENST00000396096 NUTM2GQ5VZR2 741 aa21.08■□□□□ 0.97
NUP50-202ENST00000396096 TSPYL4Q9UJ04 414 aa21.08■□□□□ 0.97
NUP50-202ENST00000396096 DEKP35659 375 aaKnown RBP21.07■□□□□ 0.96
NUP50-202ENST00000396096 BMP2KLQ5H9B9 411 aa21.07■□□□□ 0.96
NUP50-202ENST00000396096 BABAM1Q9NWV8 329 aa21.07■□□□□ 0.96
NUP50-202ENST00000396096 SOS1Q07889 1333 aaPredicted RBP21.06■□□□□ 0.96
NUP50-202ENST00000396096 GNAT3A8MTJ3 354 aa21.06■□□□□ 0.96
NUP50-202ENST00000396096 ATP10DQ9P241 1426 aa21.06■□□□□ 0.96
NUP50-202ENST00000396096 FAM208AQ9UK61 1670 aaKnown RBP21.06■□□□□ 0.96
NUP50-202ENST00000396096 MAP3K5Q99683 1374 aa21.05■□□□□ 0.96
NUP50-202ENST00000396096 CACNA1FO60840 1977 aa21.05■□□□□ 0.96
NUP50-202ENST00000396096 ANKRD45Q5TZF3 282 aa21.05■□□□□ 0.96
NUP50-202ENST00000396096 IP6K1Q92551 441 aa21.05■□□□□ 0.96
NUP50-202ENST00000396096 MSH6P52701 1360 aa21.04■□□□□ 0.96
NUP50-202ENST00000396096 RPAP2Q8IXW5 612 aaPredicted RBP21.03■□□□□ 0.96
NUP50-202ENST00000396096 ANKRD44Q8N8A2 993 aa21.03■□□□□ 0.96
NUP50-202ENST00000396096 DCTPP1Q9H773 170 aa21.03■□□□□ 0.96
NUP50-202ENST00000396096 MIS18AQ9NYP9 233 aa21.03■□□□□ 0.96
NUP50-202ENST00000396096 SLC4A2P04920 1241 aa21.03■□□□□ 0.96
NUP50-202ENST00000396096 C22orf23Q9BZE7 217 aa21.03■□□□□ 0.96
NUP50-202ENST00000396096 NFKBIBQ15653 356 aa21.02■□□□□ 0.96
NUP50-202ENST00000396096 KCNH5Q8NCM2 988 aa21.02■□□□□ 0.96
NUP50-202ENST00000396096 SLIT3O75094 1523 aa21.01■□□□□ 0.95
NUP50-202ENST00000396096 N4BP2Q86UW6 1770 aaPredicted RBP21.01■□□□□ 0.95
NUP50-202ENST00000396096 PSME1Q06323 249 aa21.01■□□□□ 0.95
NUP50-202ENST00000396096 ESCO1Q5FWF5 840 aa21.01■□□□□ 0.95
NUP50-202ENST00000396096 MED1Q15648 1581 aaPredicted RBP21■□□□□ 0.95
NUP50-202ENST00000396096 C14orf37Q86TY3 774 aa21■□□□□ 0.95
NUP50-202ENST00000396096 MFAP1P55081 439 aaKnown RBP20.99■□□□□ 0.95
NUP50-202ENST00000396096 IL17REQ8NFR9 667 aa20.99■□□□□ 0.95
NUP50-202ENST00000396096 TRPM3Q9HCF6 1732 aaPredicted RBP20.99■□□□□ 0.95
NUP50-202ENST00000396096 CCT4P50991 539 aaKnown RBP20.98■□□□□ 0.95
NUP50-202ENST00000396096 CEP85Q6P2H3 762 aa20.98■□□□□ 0.95
NUP50-202ENST00000396096 KIF1AQ12756 1690 aa20.98■□□□□ 0.95
NUP50-202ENST00000396096 RBM33Q96EV2 1170 aaKnown RBP20.98■□□□□ 0.95
NUP50-202ENST00000396096 TBC1D2Q9BYX2 928 aa20.98■□□□□ 0.95
NUP50-202ENST00000396096 LMO7Q8WWI1 1683 aa20.97■□□□□ 0.95
NUP50-202ENST00000396096 NCAPD2Q15021 1401 aa20.97■□□□□ 0.95
NUP50-202ENST00000396096 CEMIPQ8WUJ3 1361 aa20.97■□□□□ 0.95
NUP50-202ENST00000396096 RBM25P49756 843 aaKnown RBP20.97■□□□□ 0.95
NUP50-202ENST00000396096 TAF7Q15545 349 aaPredicted RBP20.97■□□□□ 0.95
NUP50-202ENST00000396096 G2E3Q7L622 706 aa20.97■□□□□ 0.95
NUP50-202ENST00000396096 LTV1Q96GA3 475 aaPredicted RBP20.97■□□□□ 0.95
NUP50-202ENST00000396096 CCDC30Q5VVM6 783 aa20.96■□□□□ 0.95
NUP50-202ENST00000396096 STK31Q9BXU1 1019 aa20.96■□□□□ 0.95
NUP50-202ENST00000396096 RGPD2P0DJD1 1756 aa20.96■□□□□ 0.95
NUP50-202ENST00000396096 MEIS3Q99687 375 aa20.95■□□□□ 0.94
NUP50-202ENST00000396096 MST1RQ04912 1400 aa20.95■□□□□ 0.94
NUP50-202ENST00000396096 CAMTA1Q9Y6Y1 1673 aa20.95■□□□□ 0.94
NUP50-202ENST00000396096 KDM3BQ7LBC6 1761 aa20.94■□□□□ 0.94
NUP50-202ENST00000396096 ANTXR1Q9H6X2 564 aa20.94■□□□□ 0.94
NUP50-202ENST00000396096 PXDNLA1KZ92 1463 aa20.94■□□□□ 0.94
NUP50-202ENST00000396096 NBPF6Q5VWK0 638 aa20.94■□□□□ 0.94
NUP50-202ENST00000396096 NBPF4Q96M43 638 aa20.94■□□□□ 0.94
NUP50-202ENST00000396096 PLEKHM2Q8IWE5 1019 aa20.93■□□□□ 0.94
NUP50-202ENST00000396096 USHBP1Q8N6Y0 703 aa20.92■□□□□ 0.94
NUP50-202ENST00000396096 ORAI2Q96SN7 254 aa20.92■□□□□ 0.94
NUP50-202ENST00000396096 FLIIQ13045 1269 aa20.91■□□□□ 0.94
NUP50-202ENST00000396096 ARHGEF25Q86VW2 580 aa20.91■□□□□ 0.94
NUP50-202ENST00000396096 EIF5BO60841 1220 aaKnown RBP20.9■□□□□ 0.94
NUP50-202ENST00000396096 HMMRO75330 724 aa20.9■□□□□ 0.94
NUP50-202ENST00000396096 F6X3S4 739 aa20.9■□□□□ 0.94
NUP50-202ENST00000396096 GCP02774 474 aa20.9■□□□□ 0.94
NUP50-202ENST00000396096 TBC1D9Q6ZT07 1266 aa20.9■□□□□ 0.94
NUP50-202ENST00000396096 C1orf167Q5SNV9 1468 aa20.9■□□□□ 0.94
NUP50-202ENST00000396096 CDC45O75419 566 aa20.89■□□□□ 0.93
NUP50-202ENST00000396096 OVOS2A0A0G2JMS6 1433 aa20.89■□□□□ 0.93
NUP50-202ENST00000396096 LMTK3Q96Q04 1460 aa20.88■□□□□ 0.93
NUP50-202ENST00000396096 GSPT1P15170 499 aaKnown RBP20.88■□□□□ 0.93
NUP50-202ENST00000396096 TTC22Q5TAA0 569 aa20.88■□□□□ 0.93
NUP50-202ENST00000396096 ALS2Q96Q42 1657 aa20.88■□□□□ 0.93
NUP50-202ENST00000396096 HOXB7P09629 217 aa20.88■□□□□ 0.93
NUP50-202ENST00000396096 SLC4A10Q6U841 1118 aa20.88■□□□□ 0.93
NUP50-202ENST00000396096 GNAI2P04899 355 aa20.87■□□□□ 0.93
NUP50-202ENST00000396096 PROSER2Q86WR7 435 aaPredicted RBP20.87■□□□□ 0.93
NUP50-202ENST00000396096 SNX21Q969T3 373 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms