RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 SDSP20132 328 aa15.71■□□□□ 0.1
SHMT1-205ENST00000395684 APBB1O00213 710 aa15.7■□□□□ 0.1
SHMT1-205ENST00000395684 NAP1L5Q96NT1 182 aaPredicted RBP15.69■□□□□ 0.1
SHMT1-205ENST00000395684 MEIS3Q99687 375 aa15.69■□□□□ 0.1
SHMT1-205ENST00000395684 PRR36Q9H6K5 1346 aa15.69■□□□□ 0.1
SHMT1-205ENST00000395684 RTL1A6NKG5 1358 aa15.69■□□□□ 0.1
SHMT1-205ENST00000395684 NRXN3Q9Y4C0 1643 aa15.69■□□□□ 0.1
SHMT1-205ENST00000395684 TSPOAP1O95153 1857 aa15.69■□□□□ 0.1
SHMT1-205ENST00000395684 GOLGA6L22H0YM25 854 aa15.69■□□□□ 0.1
SHMT1-205ENST00000395684 KLHL40Q2TBA0 621 aa15.69■□□□□ 0.1
SHMT1-205ENST00000395684 PPP6R1Q9UPN7 881 aa15.69■□□□□ 0.1
SHMT1-205ENST00000395684 DDX49Q9Y6V7 483 aaKnown RBP15.69■□□□□ 0.1
SHMT1-205ENST00000395684 MSH6P52701 1360 aa15.69■□□□□ 0.1
SHMT1-205ENST00000395684 SPATA31D1Q6ZQQ2 1576 aa15.68■□□□□ 0.1
SHMT1-205ENST00000395684 PKP1Q13835 747 aa15.68■□□□□ 0.1
SHMT1-205ENST00000395684 MLECQ14165 292 aa15.68■□□□□ 0.1
SHMT1-205ENST00000395684 CYP2E1P05181 493 aaPredicted RBP15.67■□□□□ 0.1
SHMT1-205ENST00000395684 TRIM44Q96DX7 344 aaPredicted RBP15.67■□□□□ 0.1
SHMT1-205ENST00000395684 MON2Q7Z3U7 1717 aa15.67■□□□□ 0.1
SHMT1-205ENST00000395684 TRHP20396 242 aaPredicted RBP15.67■□□□□ 0.1
SHMT1-205ENST00000395684 KIAA0232Q92628 1395 aa15.66■□□□□ 0.1
SHMT1-205ENST00000395684 C3P01024 1663 aa15.66■□□□□ 0.1
SHMT1-205ENST00000395684 PTPRCP08575 1304 aa15.66■□□□□ 0.1
SHMT1-205ENST00000395684 HAP1P54257 671 aaPredicted RBP15.66■□□□□ 0.1
SHMT1-205ENST00000395684 MCTP1Q6DN14 999 aa15.66■□□□□ 0.1
SHMT1-205ENST00000395684 AK9Q5TCS8 1911 aa15.66■□□□□ 0.1
SHMT1-205ENST00000395684 SLC4A2P04920 1241 aa15.65■□□□□ 0.1
SHMT1-205ENST00000395684 NUCB2P80303 420 aa15.65■□□□□ 0.1
SHMT1-205ENST00000395684 HSP90AB2PQ58FF8 381 aa15.65■□□□□ 0.1
SHMT1-205ENST00000395684 MIS18AQ9NYP9 233 aa15.65■□□□□ 0.1
SHMT1-205ENST00000395684 ZGPATQ8N5A5 531 aaKnown RBP15.65■□□□□ 0.1
SHMT1-205ENST00000395684 SIRT1Q96EB6 747 aa15.65■□□□□ 0.1
SHMT1-205ENST00000395684 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.64■□□□□ 0.09
SHMT1-205ENST00000395684 IBTKQ9P2D0 1353 aaPredicted RBP15.64■□□□□ 0.09
SHMT1-205ENST00000395684 TTC21BQ7Z4L5 1316 aa15.64■□□□□ 0.09
SHMT1-205ENST00000395684 NASPP49321 788 aaPredicted RBP15.64■□□□□ 0.09
SHMT1-205ENST00000395684 LMBRD1Q9NUN5 540 aa15.64■□□□□ 0.09
SHMT1-205ENST00000395684 AGLP35573 1532 aa15.64■□□□□ 0.09
SHMT1-205ENST00000395684 CASC1Q6TDU7 716 aa15.63■□□□□ 0.09
SHMT1-205ENST00000395684 UBE2Q2Q8WVN8 375 aa15.63■□□□□ 0.09
SHMT1-205ENST00000395684 NRKQ7Z2Y5 1582 aa15.63■□□□□ 0.09
SHMT1-205ENST00000395684 TECPR2O15040 1411 aa15.63■□□□□ 0.09
SHMT1-205ENST00000395684 G2E3Q7L622 706 aa15.63■□□□□ 0.09
SHMT1-205ENST00000395684 AKAP12Q02952 1782 aa15.63■□□□□ 0.09
SHMT1-205ENST00000395684 CRB1P82279 1406 aa15.63■□□□□ 0.09
SHMT1-205ENST00000395684 PPP1R9BQ96SB3 815 aa15.62■□□□□ 0.09
SHMT1-205ENST00000395684 F6X3S4 739 aa15.62■□□□□ 0.09
SHMT1-205ENST00000395684 ST18O60284 1047 aa15.62■□□□□ 0.09
SHMT1-205ENST00000395684 CWC22Q9HCG8 908 aaKnown RBP15.62■□□□□ 0.09
SHMT1-205ENST00000395684 ZDHHC9Q9Y397 364 aa15.62■□□□□ 0.09
SHMT1-205ENST00000395684 NUTM2FA1L443 756 aa15.61■□□□□ 0.09
SHMT1-205ENST00000395684 FOXO3O43524 673 aa15.61■□□□□ 0.09
SHMT1-205ENST00000395684 CCDC173Q0VFZ6 552 aa15.61■□□□□ 0.09
SHMT1-205ENST00000395684 CAVIN1Q6NZI2 390 aaKnown RBP15.61■□□□□ 0.09
SHMT1-205ENST00000395684 ACEP12821 1306 aa15.61■□□□□ 0.09
SHMT1-205ENST00000395684 REC8O95072 547 aa15.61■□□□□ 0.09
SHMT1-205ENST00000395684 ZNF445P59923 1031 aa15.61■□□□□ 0.09
SHMT1-205ENST00000395684 SLC4A10Q6U841 1118 aa15.61■□□□□ 0.09
SHMT1-205ENST00000395684 ROBO2Q9HCK4 1378 aa15.61■□□□□ 0.09
SHMT1-205ENST00000395684 ERC2O15083 957 aa15.61■□□□□ 0.09
SHMT1-205ENST00000395684 NCLP19338 710 aaKnown RBP15.61■□□□□ 0.09
SHMT1-205ENST00000395684 PDE1AP54750 535 aa15.61■□□□□ 0.09
SHMT1-205ENST00000395684 SOX12O15370 315 aa15.6■□□□□ 0.09
SHMT1-205ENST00000395684 ZSCAN23Q3MJ62 389 aa15.6■□□□□ 0.09
SHMT1-205ENST00000395684 OSBPL3Q9H4L5 887 aa15.6■□□□□ 0.09
SHMT1-205ENST00000395684 OVOS2A0A0J9YW53 1432 aa15.6■□□□□ 0.09
SHMT1-205ENST00000395684 OVOS2Q6IE36 1432 aa15.6■□□□□ 0.09
SHMT1-205ENST00000395684 ITSN1Q15811 1721 aa15.59■□□□□ 0.09
SHMT1-205ENST00000395684 HMMRO75330 724 aa15.59■□□□□ 0.09
SHMT1-205ENST00000395684 CHAMP1Q96JM3 812 aa15.59■□□□□ 0.09
SHMT1-205ENST00000395684 PRPF40AO75400 957 aaKnown RBP15.59■□□□□ 0.09
SHMT1-205ENST00000395684 MTHFSDQ2M296 383 aaKnown RBP15.59■□□□□ 0.09
SHMT1-205ENST00000395684 DIP2BQ9P265 1576 aa15.58■□□□□ 0.09
SHMT1-205ENST00000395684 TSHZ3Q63HK5 1081 aa15.58■□□□□ 0.08
SHMT1-205ENST00000395684 MAP3K19Q56UN5 1328 aa15.58■□□□□ 0.08
SHMT1-205ENST00000395684 PEAK1Q9H792 1746 aa15.58■□□□□ 0.08
SHMT1-205ENST00000395684 GPT2Q8TD30 523 aa15.58■□□□□ 0.08
SHMT1-205ENST00000395684 TSPYL4Q9UJ04 414 aa15.58■□□□□ 0.08
SHMT1-205ENST00000395684 EXOC6BQ9Y2D4 811 aa15.58■□□□□ 0.08
SHMT1-205ENST00000395684 PLEKHG3A1L390 1219 aa15.57■□□□□ 0.08
SHMT1-205ENST00000395684 CCT4P50991 539 aaKnown RBP15.57■□□□□ 0.08
SHMT1-205ENST00000395684 RBSNQ9H1K0 784 aa15.56■□□□□ 0.08
SHMT1-205ENST00000395684 RGPD1P0DJD0 1748 aa15.56■□□□□ 0.08
SHMT1-205ENST00000395684 USP6P35125 1406 aa15.56■□□□□ 0.08
SHMT1-205ENST00000395684 HDGFP51858 240 aaKnown RBP15.56■□□□□ 0.08
SHMT1-205ENST00000395684 USP31Q70CQ4 1352 aa15.56■□□□□ 0.08
SHMT1-205ENST00000395684 ANP32BQ92688 251 aaKnown RBP15.56■□□□□ 0.08
SHMT1-205ENST00000395684 SALL3Q9BXA9 1300 aa15.56■□□□□ 0.08
SHMT1-205ENST00000395684 RBM27Q9P2N5 1060 aaKnown RBP15.56■□□□□ 0.08
SHMT1-205ENST00000395684 PRIM1P49642 420 aaKnown RBP15.55■□□□□ 0.08
SHMT1-205ENST00000395684 NEK4P51957 841 aa15.55■□□□□ 0.08
SHMT1-205ENST00000395684 GNAI2P04899 355 aa15.55■□□□□ 0.08
SHMT1-205ENST00000395684 ZSCAN30Q86W11 494 aa15.55■□□□□ 0.08
SHMT1-205ENST00000395684 RTF1Q92541 710 aaKnown RBP15.55■□□□□ 0.08
SHMT1-205ENST00000395684 TMX3Q96JJ7 454 aa15.54■□□□□ 0.08
SHMT1-205ENST00000395684 KIF13AQ9H1H9 1805 aa15.54■□□□□ 0.08
SHMT1-205ENST00000395684 NSFL1CQ9UNZ2 370 aaKnown RBP15.54■□□□□ 0.08
SHMT1-205ENST00000395684 PNMA6EA0A0J9YXQ4 647 aa15.53■□□□□ 0.08
SHMT1-205ENST00000395684 FOXD4L5Q5VV16 416 aaPredicted RBP15.53■□□□□ 0.08
SHMT1-205ENST00000395684 FOXD4L4Q8WXT5 416 aaPredicted RBP15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms