RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 SSFA2P28290 1259 aa25.57■■□□□ 1.68
CLK3-202ENST00000395066 ISY1Q9ULR0 285 aaKnown RBP25.57■■□□□ 1.68
CLK3-202ENST00000395066 TTC21BQ7Z4L5 1316 aa25.57■■□□□ 1.68
CLK3-202ENST00000395066 INTS3Q68E01 1043 aaKnown RBP25.57■■□□□ 1.68
CLK3-202ENST00000395066 ATP10DQ9P241 1426 aa25.57■■□□□ 1.68
CLK3-202ENST00000395066 TTC22Q5TAA0 569 aa25.56■■□□□ 1.68
CLK3-202ENST00000395066 ITSN1Q15811 1721 aa25.56■■□□□ 1.68
CLK3-202ENST00000395066 CHL1O00533 1208 aa25.55■■□□□ 1.68
CLK3-202ENST00000395066 CEP85Q6P2H3 762 aa25.55■■□□□ 1.68
CLK3-202ENST00000395066 AKAP12Q02952 1782 aa25.55■■□□□ 1.68
CLK3-202ENST00000395066 ANKRD44Q8N8A2 993 aa25.54■■□□□ 1.68
CLK3-202ENST00000395066 NAP1L5Q96NT1 182 aaPredicted RBP25.54■■□□□ 1.68
CLK3-202ENST00000395066 CIZ1Q9ULV3 898 aaPredicted RBP25.54■■□□□ 1.68
CLK3-202ENST00000395066 AK9Q5TCS8 1911 aa25.54■■□□□ 1.68
CLK3-202ENST00000395066 GAS2L3Q86XJ1 694 aa25.53■■□□□ 1.68
CLK3-202ENST00000395066 F6X3S4 739 aa25.53■■□□□ 1.68
CLK3-202ENST00000395066 SLC4A2P04920 1241 aa25.53■■□□□ 1.68
CLK3-202ENST00000395066 REREQ9P2R6 1566 aa25.53■■□□□ 1.68
CLK3-202ENST00000395066 GBP4Q96PP9 640 aa25.52■■□□□ 1.68
CLK3-202ENST00000395066 SLC4A10Q6U841 1118 aa25.52■■□□□ 1.68
CLK3-202ENST00000395066 G2E3Q7L622 706 aa25.52■■□□□ 1.68
CLK3-202ENST00000395066 RTL1A6NKG5 1358 aa25.51■■□□□ 1.67
CLK3-202ENST00000395066 SDSP20132 328 aa25.5■■□□□ 1.67
CLK3-202ENST00000395066 PEAK1Q9H792 1746 aa25.5■■□□□ 1.67
CLK3-202ENST00000395066 TECPR2O15040 1411 aa25.49■■□□□ 1.67
CLK3-202ENST00000395066 NRKQ7Z2Y5 1582 aa25.49■■□□□ 1.67
CLK3-202ENST00000395066 SLC26A8Q96RN1 970 aa25.49■■□□□ 1.67
CLK3-202ENST00000395066 MAP3K19Q56UN5 1328 aa25.48■■□□□ 1.67
CLK3-202ENST00000395066 RIMS1Q86UR5 1692 aaKnown RBP25.48■■□□□ 1.67
CLK3-202ENST00000395066 USP26Q9BXU7 913 aa25.48■■□□□ 1.67
CLK3-202ENST00000395066 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.47■■□□□ 1.67
CLK3-202ENST00000395066 KIF24Q5T7B8 1368 aa25.47■■□□□ 1.67
CLK3-202ENST00000395066 OVOS2A0A0J9YW53 1432 aa25.47■■□□□ 1.67
CLK3-202ENST00000395066 OVOS2Q6IE36 1432 aa25.47■■□□□ 1.67
CLK3-202ENST00000395066 MTHFSDQ2M296 383 aaKnown RBP25.47■■□□□ 1.67
CLK3-202ENST00000395066 TSHZ3Q63HK5 1081 aa25.47■■□□□ 1.67
CLK3-202ENST00000395066 PLPPR3Q6T4P5 718 aa25.47■■□□□ 1.67
CLK3-202ENST00000395066 LTKP29376 864 aa25.46■■□□□ 1.67
CLK3-202ENST00000395066 RPAP2Q8IXW5 612 aaPredicted RBP25.46■■□□□ 1.67
CLK3-202ENST00000395066 PKP1Q13835 747 aa25.46■■□□□ 1.67
CLK3-202ENST00000395066 SKOR2Q2VWA4 1001 aaPredicted RBP25.46■■□□□ 1.67
CLK3-202ENST00000395066 ESPNB1AK53 854 aa25.45■■□□□ 1.66
CLK3-202ENST00000395066 TNRQ92752 1358 aa25.45■■□□□ 1.66
CLK3-202ENST00000395066 TMEM2Q9UHN6 1383 aa25.45■■□□□ 1.66
CLK3-202ENST00000395066 NECTIN2Q92692 538 aa25.45■■□□□ 1.66
CLK3-202ENST00000395066 SIRT1Q96EB6 747 aa25.45■■□□□ 1.66
CLK3-202ENST00000395066 CRB1P82279 1406 aa25.45■■□□□ 1.66
CLK3-202ENST00000395066 PTMSP20962 102 aa25.44■■□□□ 1.66
CLK3-202ENST00000395066 TSPYL4Q9UJ04 414 aa25.44■■□□□ 1.66
CLK3-202ENST00000395066 USP6P35125 1406 aa25.43■■□□□ 1.66
CLK3-202ENST00000395066 ADAMTS13Q76LX8 1427 aa25.43■■□□□ 1.66
CLK3-202ENST00000395066 HDGFP51858 240 aaKnown RBP25.43■■□□□ 1.66
CLK3-202ENST00000395066 RABEP1Q15276 862 aa25.42■■□□□ 1.66
CLK3-202ENST00000395066 PTPRCP08575 1304 aa25.42■■□□□ 1.66
CLK3-202ENST00000395066 KIAA0232Q92628 1395 aa25.42■■□□□ 1.66
CLK3-202ENST00000395066 ERBB4Q15303 1308 aa25.41■■□□□ 1.66
CLK3-202ENST00000395066 BAG4O95429 457 aaKnown RBP25.41■■□□□ 1.66
CLK3-202ENST00000395066 TRIM44Q96DX7 344 aaPredicted RBP25.41■■□□□ 1.66
CLK3-202ENST00000395066 EXOC6BQ9Y2D4 811 aa25.41■■□□□ 1.66
CLK3-202ENST00000395066 ZGPATQ8N5A5 531 aaKnown RBP25.4■■□□□ 1.66
CLK3-202ENST00000395066 PLEKHG3A1L390 1219 aa25.39■■□□□ 1.66
CLK3-202ENST00000395066 CEBPAP49715 358 aaPredicted RBP25.39■■□□□ 1.66
CLK3-202ENST00000395066 RTF1Q92541 710 aaKnown RBP25.39■■□□□ 1.66
CLK3-202ENST00000395066 CHAMP1Q96JM3 812 aa25.39■■□□□ 1.65
CLK3-202ENST00000395066 HAP1P54257 671 aaPredicted RBP25.38■■□□□ 1.65
CLK3-202ENST00000395066 NUTM2GQ5VZR2 741 aa25.38■■□□□ 1.65
CLK3-202ENST00000395066 MCTP1Q6DN14 999 aa25.37■■□□□ 1.65
CLK3-202ENST00000395066 DDX49Q9Y6V7 483 aaKnown RBP25.37■■□□□ 1.65
CLK3-202ENST00000395066 RGPD1P0DJD0 1748 aa25.37■■□□□ 1.65
CLK3-202ENST00000395066 EYA1Q99502 592 aa25.36■■□□□ 1.65
CLK3-202ENST00000395066 PTPRUQ92729 1446 aa25.36■■□□□ 1.65
CLK3-202ENST00000395066 UBR1Q8IWV7 1749 aa25.36■■□□□ 1.65
CLK3-202ENST00000395066 AMPHP49418 695 aa25.34■■□□□ 1.65
CLK3-202ENST00000395066 USP31Q70CQ4 1352 aa25.34■■□□□ 1.65
CLK3-202ENST00000395066 CEP170BQ9Y4F5 1589 aaPredicted RBP25.34■■□□□ 1.65
CLK3-202ENST00000395066 TOPAZ1Q8N9V7 1692 aa25.34■■□□□ 1.65
CLK3-202ENST00000395066 PDE1AP54750 535 aa25.34■■□□□ 1.65
CLK3-202ENST00000395066 CASC1Q6TDU7 716 aa25.34■■□□□ 1.65
CLK3-202ENST00000395066 NCLP19338 710 aaKnown RBP25.33■■□□□ 1.65
CLK3-202ENST00000395066 GOLGA6L22H0YM25 854 aa25.33■■□□□ 1.65
CLK3-202ENST00000395066 NGDNQ8NEJ9 315 aaKnown RBP25.33■■□□□ 1.65
CLK3-202ENST00000395066 FOXD4L5Q5VV16 416 aaPredicted RBP25.33■■□□□ 1.64
CLK3-202ENST00000395066 FOXD4L4Q8WXT5 416 aaPredicted RBP25.33■■□□□ 1.64
CLK3-202ENST00000395066 NALCNQ8IZF0 1738 aa25.32■■□□□ 1.64
CLK3-202ENST00000395066 PNMA6EA0A0J9YXQ4 647 aa25.32■■□□□ 1.64
CLK3-202ENST00000395066 HMMRO75330 724 aa25.32■■□□□ 1.64
CLK3-202ENST00000395066 AMOTL2Q9Y2J4 779 aa25.32■■□□□ 1.64
CLK3-202ENST00000395066 ARHGEF10O15013 1369 aa25.31■■□□□ 1.64
CLK3-202ENST00000395066 FKBP5Q13451 457 aaPredicted RBP25.31■■□□□ 1.64
CLK3-202ENST00000395066 ERC2O15083 957 aa25.31■■□□□ 1.64
CLK3-202ENST00000395066 CLEC17AQ6ZS10 378 aa25.31■■□□□ 1.64
CLK3-202ENST00000395066 LTV1Q96GA3 475 aaPredicted RBP25.3■■□□□ 1.64
CLK3-202ENST00000395066 SSH2Q76I76 1423 aa25.3■■□□□ 1.64
CLK3-202ENST00000395066 CCT4P50991 539 aaKnown RBP25.3■■□□□ 1.64
CLK3-202ENST00000395066 FLT4P35916 1363 aa25.29■■□□□ 1.64
CLK3-202ENST00000395066 ST18O60284 1047 aa25.29■■□□□ 1.64
CLK3-202ENST00000395066 REC8O95072 547 aa25.29■■□□□ 1.64
CLK3-202ENST00000395066 GNAI2P04899 355 aa25.29■■□□□ 1.64
CLK3-202ENST00000395066 CYP2E1P05181 493 aaPredicted RBP25.29■■□□□ 1.64
CLK3-202ENST00000395066 HSP90AA2PQ14568 343 aaPredicted RBP25.29■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms