RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 KCNQ4P56696 695 aa19.37■□□□□ 0.69
CXCL12-202ENST00000374426 RRS1Q15050 365 aaKnown RBP19.37■□□□□ 0.69
CXCL12-202ENST00000374426 ZCRB1Q8TBF4 217 aaKnown RBP19.37■□□□□ 0.69
CXCL12-202ENST00000374426 SHANK3Q9BYB0 1731 aa19.37■□□□□ 0.69
CXCL12-202ENST00000374426 PNPLA7Q6ZV29 1317 aa19.36■□□□□ 0.69
CXCL12-202ENST00000374426 GGNBP2Q9H3C7 697 aa19.36■□□□□ 0.69
CXCL12-202ENST00000374426 DOT1LQ8TEK3 1739 aa19.36■□□□□ 0.69
CXCL12-202ENST00000374426 NBPF6Q5VWK0 638 aa19.35■□□□□ 0.69
CXCL12-202ENST00000374426 ZNF784Q8NCA9 323 aaPredicted RBP19.35■□□□□ 0.69
CXCL12-202ENST00000374426 SLC16A10Q8TF71 515 aa19.35■□□□□ 0.69
CXCL12-202ENST00000374426 NBPF4Q96M43 638 aa19.35■□□□□ 0.69
CXCL12-202ENST00000374426 QSER1Q2KHR3 1735 aa19.34■□□□□ 0.69
CXCL12-202ENST00000374426 TMF1P82094 1093 aa19.34■□□□□ 0.69
CXCL12-202ENST00000374426 USP47Q96K76 1375 aa19.33■□□□□ 0.69
CXCL12-202ENST00000374426 USHBP1Q8N6Y0 703 aa19.33■□□□□ 0.68
CXCL12-202ENST00000374426 TFCP2L1Q9NZI6 479 aa19.33■□□□□ 0.68
CXCL12-202ENST00000374426 LY75O60449 1722 aa19.32■□□□□ 0.68
CXCL12-202ENST00000374426 CGNL1Q0VF96 1302 aa19.31■□□□□ 0.68
CXCL12-202ENST00000374426 TUBGCP6Q96RT7 1819 aa19.31■□□□□ 0.68
CXCL12-202ENST00000374426 COL24A1Q17RW2 1714 aa19.31■□□□□ 0.68
CXCL12-202ENST00000374426 POLD1P28340 1107 aa19.3■□□□□ 0.68
CXCL12-202ENST00000374426 CCNL1Q9UK58 526 aaPredicted RBP19.3■□□□□ 0.68
CXCL12-202ENST00000374426 SMG6Q86US8 1419 aaKnown RBP19.3■□□□□ 0.68
CXCL12-202ENST00000374426 HSP90AB2PQ58FF8 381 aa19.29■□□□□ 0.68
CXCL12-202ENST00000374426 RAPGEF4Q8WZA2 1011 aa19.29■□□□□ 0.68
CXCL12-202ENST00000374426 INSRP06213 1382 aa19.29■□□□□ 0.68
CXCL12-202ENST00000374426 CHD4Q14839 1912 aa19.29■□□□□ 0.68
CXCL12-202ENST00000374426 TATP17735 454 aaPredicted RBP19.27■□□□□ 0.68
CXCL12-202ENST00000374426 KLHL34Q8N239 644 aa19.27■□□□□ 0.68
CXCL12-202ENST00000374426 FLT4P35916 1363 aa19.27■□□□□ 0.68
CXCL12-202ENST00000374426 GPR162Q16538 588 aa19.26■□□□□ 0.67
CXCL12-202ENST00000374426 CARD14Q9BXL6 1004 aa19.26■□□□□ 0.67
CXCL12-202ENST00000374426 KIF24Q5T7B8 1368 aa19.26■□□□□ 0.67
CXCL12-202ENST00000374426 KIF20BQ96Q89 1820 aa19.25■□□□□ 0.67
CXCL12-202ENST00000374426 CDCA8Q53HL2 280 aa19.25■□□□□ 0.67
CXCL12-202ENST00000374426 PCDH11XQ9BZA7 1347 aa19.25■□□□□ 0.67
CXCL12-202ENST00000374426 PCDH11YQ9BZA8 1340 aa19.25■□□□□ 0.67
CXCL12-202ENST00000374426 COL23A1Q86Y22 540 aaPredicted RBP19.24■□□□□ 0.67
CXCL12-202ENST00000374426 NLGN2Q8NFZ4 835 aa19.24■□□□□ 0.67
CXCL12-202ENST00000374426 CYP27B1O15528 508 aa19.23■□□□□ 0.67
CXCL12-202ENST00000374426 EMILIN1Q9Y6C2 1016 aa19.23■□□□□ 0.67
CXCL12-202ENST00000374426 MSH5O43196 834 aa19.22■□□□□ 0.67
CXCL12-202ENST00000374426 NSD3Q9BZ95 1437 aa19.22■□□□□ 0.67
CXCL12-202ENST00000374426 TRIM26Q12899 539 aaPredicted RBP19.21■□□□□ 0.67
CXCL12-202ENST00000374426 PALLDQ8WX93 1383 aa19.2■□□□□ 0.66
CXCL12-202ENST00000374426 MPRIPQ6WCQ1 1025 aa19.2■□□□□ 0.66
CXCL12-202ENST00000374426 PELP1Q8IZL8 1130 aaKnown RBP19.2■□□□□ 0.66
CXCL12-202ENST00000374426 C5P01031 1676 aa19.2■□□□□ 0.66
CXCL12-202ENST00000374426 NCAPD2Q15021 1401 aa19.19■□□□□ 0.66
CXCL12-202ENST00000374426 MSL1Q68DK7 614 aa19.19■□□□□ 0.66
CXCL12-202ENST00000374426 TOGARAM1Q9Y4F4 1720 aa19.18■□□□□ 0.66
CXCL12-202ENST00000374426 PKD1L3Q7Z443 1732 aa19.17■□□□□ 0.66
CXCL12-202ENST00000374426 PPM1GO15355 546 aaPredicted RBP19.16■□□□□ 0.66
CXCL12-202ENST00000374426 YBX3P16989 372 aaKnown RBP eCLIP19.16■□□□□ 0.66
CXCL12-202ENST00000374426 C1QTNF8P60827 252 aa19.16■□□□□ 0.66
CXCL12-202ENST00000374426 TAF1LQ8IZX4 1826 aa19.16■□□□□ 0.66
CXCL12-202ENST00000374426 ANKRD26Q9UPS8 1709 aa19.15■□□□□ 0.66
CXCL12-202ENST00000374426 NKX1-1Q15270 411 aaPredicted RBP19.15■□□□□ 0.66
CXCL12-202ENST00000374426 FLAD1Q8NFF5 587 aa19.15■□□□□ 0.66
CXCL12-202ENST00000374426 PIGBQ92521 554 aa19.15■□□□□ 0.66
CXCL12-202ENST00000374426 WASHC2AQ641Q2 1341 aa19.15■□□□□ 0.66
CXCL12-202ENST00000374426 ITGB4P16144 1822 aa19.14■□□□□ 0.65
CXCL12-202ENST00000374426 HMGB2P26583 209 aaKnown RBP19.14■□□□□ 0.65
CXCL12-202ENST00000374426 AMIGO3Q86WK7 504 aa19.14■□□□□ 0.65
CXCL12-202ENST00000374426 SMARCC1Q92922 1105 aaPredicted RBP19.14■□□□□ 0.65
CXCL12-202ENST00000374426 EYA1Q99502 592 aa19.13■□□□□ 0.65
CXCL12-202ENST00000374426 SPG7Q9UQ90 795 aa19.13■□□□□ 0.65
CXCL12-202ENST00000374426 C4BP0C0L5 1744 aa19.13■□□□□ 0.65
CXCL12-202ENST00000374426 GRIN3BO60391 1043 aa19.12■□□□□ 0.65
CXCL12-202ENST00000374426 TIMELESSQ9UNS1 1208 aa19.12■□□□□ 0.65
CXCL12-202ENST00000374426 CEP350Q5VT06 3117 aa19.12■□□□□ 0.65
CXCL12-202ENST00000374426 AK7Q96M32 723 aa19.11■□□□□ 0.65
CXCL12-202ENST00000374426 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.11■□□□□ 0.65
CXCL12-202ENST00000374426 POLKQ9UBT6 870 aa19.11■□□□□ 0.65
CXCL12-202ENST00000374426 CD2APQ9Y5K6 639 aa19.11■□□□□ 0.65
CXCL12-202ENST00000374426 SENP3-EIF4A1A0A087X0R7 540 aa19.1■□□□□ 0.65
CXCL12-202ENST00000374426 SMIM5Q71RC9 77 aa19.1■□□□□ 0.65
CXCL12-202ENST00000374426 MAP2P11137 1827 aaKnown RBP19.09■□□□□ 0.65
CXCL12-202ENST00000374426 LOC102724428A0A0B4J2F2 783 aa19.09■□□□□ 0.65
CXCL12-202ENST00000374426 SIK1P57059 783 aa19.09■□□□□ 0.65
CXCL12-202ENST00000374426 UBR3Q6ZT12 1888 aa19.08■□□□□ 0.65
CXCL12-202ENST00000374426 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.08■□□□□ 0.64
CXCL12-202ENST00000374426 GIGYF1O75420 1035 aaPredicted RBP19.08■□□□□ 0.64
CXCL12-202ENST00000374426 PHF14O94880 888 aa19.08■□□□□ 0.64
CXCL12-202ENST00000374426 LINC00116Q8NCU8 138 aa19.08■□□□□ 0.64
CXCL12-202ENST00000374426 PHKG2P15735 406 aa19.07■□□□□ 0.64
CXCL12-202ENST00000374426 TMOD3Q9NYL9 352 aa19.07■□□□□ 0.64
CXCL12-202ENST00000374426 ASAP1Q9ULH1 1129 aa19.07■□□□□ 0.64
CXCL12-202ENST00000374426 SSFA2P28290 1259 aa19.06■□□□□ 0.64
CXCL12-202ENST00000374426 EIF4A2Q14240 407 aaKnown RBP19.06■□□□□ 0.64
CXCL12-202ENST00000374426 IFNL2Q8IZJ0 200 aa19.06■□□□□ 0.64
CXCL12-202ENST00000374426 TNNT2P45379 298 aaPredicted RBP19.05■□□□□ 0.64
CXCL12-202ENST00000374426 ITPK1Q13572 414 aa19.05■□□□□ 0.64
CXCL12-202ENST00000374426 POLR3GLQ9BT43 218 aa19.05■□□□□ 0.64
CXCL12-202ENST00000374426 CLSPNQ9HAW4 1339 aa19.03■□□□□ 0.64
CXCL12-202ENST00000374426 ATG3Q9NT62 314 aa19.03■□□□□ 0.64
CXCL12-202ENST00000374426 GNPATO15228 680 aa19.02■□□□□ 0.64
CXCL12-202ENST00000374426 ATP6V1AP38606 617 aa19.02■□□□□ 0.64
CXCL12-202ENST00000374426 PLEKHG2Q9H7P9 1386 aa19.02■□□□□ 0.64
CXCL12-202ENST00000374426 IGSF1Q8N6C5 1336 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms