RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 LIG1P18858 919 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 SLC4A8Q2Y0W8 1093 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 RBAK-RBAKDNI3L0D1 243 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 UQCRHLA0A096LP55 91 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 UQCRHP07919 91 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 DNAJC21Q5F1R6 531 aaKnown RBP4.23□□□□□ -1.73
SYNE1-201ENST00000341594 PRKRIP1Q9H875 184 aaPredicted RBP4.23□□□□□ -1.73
SYNE1-201ENST00000341594 ABCA9Q8IUA7 1624 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 SHROOM2Q13796 1616 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 MYCNP04198 464 aaPredicted RBP4.23□□□□□ -1.73
SYNE1-201ENST00000341594 PAXBP1Q9Y5B6 917 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 WDR78Q5VTH9 848 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 KIF3AQ9Y496 699 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 CCDC173Q0VFZ6 552 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 MRVI1Q9Y6F6 885 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 ESPNB1AK53 854 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 RGS22Q8NE09 1264 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 DYDC1Q8WWB3 177 aa4.23□□□□□ -1.73
SYNE1-201ENST00000341594 AFDNP55196 1824 aaKnown RBP4.23□□□□□ -1.73
SYNE1-201ENST00000341594 ANAPC15P60006 121 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 AIMP1Q12904 312 aaKnown RBP4.22□□□□□ -1.73
SYNE1-201ENST00000341594 ZCWPW1Q9H0M4 648 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 MBD3O95983 291 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 EPC1Q9H2F5 836 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 DDX17Q92841 729 aaKnown RBP4.22□□□□□ -1.73
SYNE1-201ENST00000341594 ADGRL1O94910 1474 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 TTC12Q9H892 705 aaPredicted RBP4.22□□□□□ -1.73
SYNE1-201ENST00000341594 SCN9AQ15858 1988 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 L3MBTL2Q969R5 705 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 CALCOCO1Q9P1Z2 691 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 MYOM3Q5VTT5 1437 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 LGR5O75473 907 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 ZSCAN30Q86W11 494 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 EXOC8Q8IYI6 725 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 GABPB1Q06547 395 aaPredicted RBP4.22□□□□□ -1.73
SYNE1-201ENST00000341594 CCDC82Q8N4S0 544 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 HMOX1P09601 288 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 RPRD2Q5VT52 1461 aaKnown RBP4.22□□□□□ -1.73
SYNE1-201ENST00000341594 USP25Q9UHP3 1055 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 SCN4AP35499 1836 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 ZPR1O75312 459 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 CNPY4Q8N129 248 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 PLEKHD1A6NEE1 506 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 ERCC3P19447 782 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 BIN1O00499 593 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 ZNF500O60304 480 aaPredicted RBP4.22□□□□□ -1.73
SYNE1-201ENST00000341594 NEMFO60524 1076 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 ADAMTS8Q9UP79 889 aa4.22□□□□□ -1.73
SYNE1-201ENST00000341594 HSP90AB4PQ58FF6 505 aa4.21□□□□□ -1.73
SYNE1-201ENST00000341594 CFTRP13569 1480 aa4.21□□□□□ -1.73
SYNE1-201ENST00000341594 LRPPRCP42704 1394 aaKnown RBP4.21□□□□□ -1.73
SYNE1-201ENST00000341594 SUDS3Q9H7L9 328 aaPredicted RBP4.21□□□□□ -1.73
SYNE1-201ENST00000341594 IFT57Q9NWB7 429 aa4.21□□□□□ -1.73
SYNE1-201ENST00000341594 CEP83Q9Y592 693 aa4.21□□□□□ -1.73
SYNE1-201ENST00000341594 HSCBQ8IWL3 235 aa4.21□□□□□ -1.73
SYNE1-201ENST00000341594 STAG3Q9UJ98 1225 aa4.21□□□□□ -1.73
SYNE1-201ENST00000341594 RTF1Q92541 710 aaKnown RBP4.21□□□□□ -1.74
SYNE1-201ENST00000341594 PLEKHH1Q9ULM0 1364 aa4.21□□□□□ -1.74
SYNE1-201ENST00000341594 RDXP35241 583 aaKnown RBP4.21□□□□□ -1.74
SYNE1-201ENST00000341594 TRDNQ13061 729 aa4.21□□□□□ -1.74
SYNE1-201ENST00000341594 SF3A1Q15459 793 aaKnown RBP4.21□□□□□ -1.74
SYNE1-201ENST00000341594 FTSJ3Q8IY81 847 aaKnown RBP4.21□□□□□ -1.74
SYNE1-201ENST00000341594 U2AF1L5P0DN76 240 aaPredicted RBP4.21□□□□□ -1.74
SYNE1-201ENST00000341594 U2AF1Q01081 240 aaKnown RBP eCLIP4.21□□□□□ -1.74
SYNE1-201ENST00000341594 LBHD1Q9BQE6 289 aaPredicted RBP4.21□□□□□ -1.74
SYNE1-201ENST00000341594 ZBTB12Q9Y330 459 aaPredicted RBP4.21□□□□□ -1.74
SYNE1-201ENST00000341594 U2AF2P26368 475 aaKnown RBP eCLIP4.21□□□□□ -1.74
SYNE1-201ENST00000341594 SNX21Q969T3 373 aa4.21□□□□□ -1.74
SYNE1-201ENST00000341594 USP8P40818 1118 aa4.21□□□□□ -1.74
SYNE1-201ENST00000341594 SPATA31E1Q6ZUB1 1445 aa4.21□□□□□ -1.74
SYNE1-201ENST00000341594 CCP110O43303 1012 aa4.21□□□□□ -1.74
SYNE1-201ENST00000341594 OFD1O75665 1012 aa4.21□□□□□ -1.74
SYNE1-201ENST00000341594 CPA1P15085 419 aa4.21□□□□□ -1.74
SYNE1-201ENST00000341594 PNISRQ8TF01 805 aaKnown RBP4.21□□□□□ -1.74
SYNE1-201ENST00000341594 KNSTRNQ9Y448 316 aa4.21□□□□□ -1.74
SYNE1-201ENST00000341594 LAMA4Q16363 1823 aa4.21□□□□□ -1.74
SYNE1-201ENST00000341594 SH3BGRP55822 239 aaPredicted RBP4.21□□□□□ -1.74
SYNE1-201ENST00000341594 NECAB1Q8N987 351 aa4.21□□□□□ -1.74
SYNE1-201ENST00000341594 MORC1Q86VD1 984 aa4.21□□□□□ -1.74
SYNE1-201ENST00000341594 NOL10Q9BSC4 688 aaKnown RBP4.21□□□□□ -1.74
SYNE1-201ENST00000341594 MAFGO15525 162 aa4.21□□□□□ -1.74
SYNE1-201ENST00000341594 FAM135AQ9P2D6 1515 aa4.21□□□□□ -1.74
SYNE1-201ENST00000341594 CARD11Q9BXL7 1154 aa4.21□□□□□ -1.74
SYNE1-201ENST00000341594 LONRF3Q496Y0 759 aa4.21□□□□□ -1.74
SYNE1-201ENST00000341594 MRRFQ96E11 262 aaKnown RBP4.21□□□□□ -1.74
SYNE1-201ENST00000341594 GDAP1L1Q96MZ0 367 aa4.21□□□□□ -1.74
SYNE1-201ENST00000341594 TCOF1Q13428 1488 aaKnown RBP4.21□□□□□ -1.74
SYNE1-201ENST00000341594 EFCC1Q9HA90 598 aa4.21□□□□□ -1.74
SYNE1-201ENST00000341594 GABBR1Q9UBS5 961 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 MYO1BO43795 1136 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.2□□□□□ -1.74
SYNE1-201ENST00000341594 CCDC125Q86Z20 511 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 KIF13BQ9NQT8 1826 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 CKAP2LQ8IYA6 745 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 MAPKBP1O60336 1514 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 MATR3P43243 847 aaKnown RBP eCLIP4.2□□□□□ -1.74
SYNE1-201ENST00000341594 NBPF7P0C2Y1 421 aaPredicted RBP4.2□□□□□ -1.74
SYNE1-201ENST00000341594 DDX11Q96FC9 970 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 CCDC39Q9UFE4 941 aa4.2□□□□□ -1.74
SYNE1-201ENST00000341594 FSD2A1L4K1 749 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms