RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 DTNBO60941 627 aa9.64□□□□□ -0.87
VMA21-201ENST00000330374 HDGFL2Q7Z4V5 671 aaPredicted RBP9.64□□□□□ -0.87
VMA21-201ENST00000330374 CHMP4BQ9H444 224 aaKnown RBP9.64□□□□□ -0.87
VMA21-201ENST00000330374 SLC4A10Q6U841 1118 aa9.63□□□□□ -0.87
VMA21-201ENST00000330374 C17orf53Q8N3J3 647 aaPredicted RBP9.63□□□□□ -0.87
VMA21-201ENST00000330374 SHROOM2Q13796 1616 aa9.63□□□□□ -0.87
VMA21-201ENST00000330374 FCHSD2O94868 740 aa9.63□□□□□ -0.87
VMA21-201ENST00000330374 NFE2L2Q16236 605 aa9.63□□□□□ -0.87
VMA21-201ENST00000330374 ZHX1Q9UKY1 873 aaPredicted RBP9.63□□□□□ -0.87
VMA21-201ENST00000330374 KIAA1210Q9ULL0 1709 aa9.63□□□□□ -0.87
VMA21-201ENST00000330374 ATP7AQ04656 1500 aa9.63□□□□□ -0.87
VMA21-201ENST00000330374 FANCAO15360 1455 aa9.62□□□□□ -0.87
VMA21-201ENST00000330374 VGFO15240 615 aaPredicted RBP9.62□□□□□ -0.87
VMA21-201ENST00000330374 GNAI1P63096 354 aa9.62□□□□□ -0.87
VMA21-201ENST00000330374 ZRANB1Q9UGI0 708 aa9.62□□□□□ -0.87
VMA21-201ENST00000330374 CFAP74Q9C0B2 1584 aa9.62□□□□□ -0.87
VMA21-201ENST00000330374 LRSAM1Q6UWE0 723 aa9.62□□□□□ -0.87
VMA21-201ENST00000330374 NSD2O96028 1365 aa9.62□□□□□ -0.87
VMA21-201ENST00000330374 API5Q9BZZ5 524 aaKnown RBP9.61□□□□□ -0.87
VMA21-201ENST00000330374 ADGRL1O94910 1474 aa9.61□□□□□ -0.87
VMA21-201ENST00000330374 SOX12O15370 315 aa9.61□□□□□ -0.87
VMA21-201ENST00000330374 POLKQ9UBT6 870 aa9.61□□□□□ -0.87
VMA21-201ENST00000330374 CCDC39Q9UFE4 941 aa9.61□□□□□ -0.87
VMA21-201ENST00000330374 ADGRB2O60241 1585 aa9.61□□□□□ -0.87
VMA21-201ENST00000330374 CYP2E1P05181 493 aaPredicted RBP9.61□□□□□ -0.87
VMA21-201ENST00000330374 RRS1Q15050 365 aaKnown RBP9.61□□□□□ -0.87
VMA21-201ENST00000330374 CDK19Q9BWU1 502 aa9.61□□□□□ -0.87
VMA21-201ENST00000330374 UPF3BQ9BZI7 483 aaKnown RBP9.61□□□□□ -0.87
VMA21-201ENST00000330374 DCTPP1Q9H773 170 aa9.61□□□□□ -0.87
VMA21-201ENST00000330374 ZNF500O60304 480 aaPredicted RBP9.61□□□□□ -0.87
VMA21-201ENST00000330374 CLEC17AQ6ZS10 378 aa9.61□□□□□ -0.87
VMA21-201ENST00000330374 TULP4Q9NRJ4 1543 aa9.61□□□□□ -0.87
VMA21-201ENST00000330374 RILPL2Q969X0 211 aa9.6□□□□□ -0.87
VMA21-201ENST00000330374 PDLIM2Q96JY6 352 aa9.6□□□□□ -0.87
VMA21-201ENST00000330374 MEIS3Q99687 375 aa9.6□□□□□ -0.87
VMA21-201ENST00000330374 LARP6Q9BRS8 491 aaKnown RBP9.6□□□□□ -0.87
VMA21-201ENST00000330374 CWC22Q9HCG8 908 aaKnown RBP9.6□□□□□ -0.87
VMA21-201ENST00000330374 PPP1R1BQ9UD71 204 aaPredicted RBP9.6□□□□□ -0.87
VMA21-201ENST00000330374 HOXD11P31277 338 aaPredicted RBP9.6□□□□□ -0.87
VMA21-201ENST00000330374 TMX3Q96JJ7 454 aa9.6□□□□□ -0.87
VMA21-201ENST00000330374 IBTKQ9P2D0 1353 aaPredicted RBP9.6□□□□□ -0.87
VMA21-201ENST00000330374 ABCC4O15439 1325 aa9.6□□□□□ -0.87
VMA21-201ENST00000330374 TRIM6-TRIM34B2RNG4 842 aa9.6□□□□□ -0.87
VMA21-201ENST00000330374 REC8O95072 547 aa9.6□□□□□ -0.87
VMA21-201ENST00000330374 MIS18AQ9NYP9 233 aa9.6□□□□□ -0.87
VMA21-201ENST00000330374 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.6□□□□□ -0.872e-7■■■■□ 23.5
VMA21-201ENST00000330374 GADD45BO75293 160 aaPredicted RBP9.6□□□□□ -0.87
VMA21-201ENST00000330374 TSPY26PQ9H489 355 aa9.6□□□□□ -0.87
VMA21-201ENST00000330374 ANO2Q9NQ90 1003 aa9.6□□□□□ -0.87
VMA21-201ENST00000330374 CSPP1Q1MSJ5 1256 aa9.59□□□□□ -0.87
VMA21-201ENST00000330374 EXOC6BQ9Y2D4 811 aa9.59□□□□□ -0.87
VMA21-201ENST00000330374 ZCCHC11Q5TAX3 1644 aaKnown RBP9.59□□□□□ -0.87
VMA21-201ENST00000330374 ERC2O15083 957 aa9.59□□□□□ -0.87
VMA21-201ENST00000330374 ARHGAP45Q92619 1136 aa9.59□□□□□ -0.87
VMA21-201ENST00000330374 TTC12Q9H892 705 aaPredicted RBP9.59□□□□□ -0.87
VMA21-201ENST00000330374 USP25Q9UHP3 1055 aa9.59□□□□□ -0.87
VMA21-201ENST00000330374 NPATQ14207 1427 aa9.59□□□□□ -0.87
VMA21-201ENST00000330374 SASS6Q6UVJ0 657 aa9.59□□□□□ -0.87
VMA21-201ENST00000330374 F6X3S4 739 aa9.58□□□□□ -0.88
VMA21-201ENST00000330374 ABCB7O75027 752 aa9.58□□□□□ -0.88
VMA21-201ENST00000330374 KIAA2012Q0VF49 1180 aa9.58□□□□□ -0.88
VMA21-201ENST00000330374 IDI1Q13907 227 aa9.58□□□□□ -0.88
VMA21-201ENST00000330374 HS1BP3Q53T59 392 aa9.58□□□□□ -0.88
VMA21-201ENST00000330374 BCL11BQ9C0K0 894 aaPredicted RBP9.58□□□□□ -0.88
VMA21-201ENST00000330374 IFT57Q9NWB7 429 aa9.58□□□□□ -0.88
VMA21-201ENST00000330374 MCM10Q7L590 875 aa9.58□□□□□ -0.88
VMA21-201ENST00000330374 WAPLQ7Z5K2 1190 aa9.58□□□□□ -0.88
VMA21-201ENST00000330374 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.58□□□□□ -0.88
VMA21-201ENST00000330374 CEP85Q6P2H3 762 aa9.58□□□□□ -0.88
VMA21-201ENST00000330374 NME9Q86XW9 330 aa9.58□□□□□ -0.88
VMA21-201ENST00000330374 PALD1Q9ULE6 856 aa9.58□□□□□ -0.88
VMA21-201ENST00000330374 NECTIN2Q92692 538 aa9.58□□□□□ -0.88
VMA21-201ENST00000330374 ADGRB1O14514 1584 aa9.58□□□□□ -0.88
VMA21-201ENST00000330374 A0A0U1RQG5 324 aaPredicted RBP9.57□□□□□ -0.88
VMA21-201ENST00000330374 CBX1P83916 185 aa9.57□□□□□ -0.88
VMA21-201ENST00000330374 ANKRD44Q8N8A2 993 aa9.57□□□□□ -0.88
VMA21-201ENST00000330374 ZNF428Q96B54 188 aa9.57□□□□□ -0.88
VMA21-201ENST00000330374 MAP7D2Q96T17 732 aa9.57□□□□□ -0.88
VMA21-201ENST00000330374 PPRC1Q5VV67 1664 aaKnown RBP9.57□□□□□ -0.88
VMA21-201ENST00000330374 CHD1O14646 1710 aa9.57□□□□□ -0.88
VMA21-201ENST00000330374 EFCAB6Q5THR3 1501 aa9.57□□□□□ -0.88
VMA21-201ENST00000330374 DYNC1I1O14576 645 aa9.57□□□□□ -0.88
VMA21-201ENST00000330374 MED14O60244 1454 aa9.57□□□□□ -0.88
VMA21-201ENST00000330374 COL3A1P02461 1466 aaPredicted RBP9.57□□□□□ -0.88
VMA21-201ENST00000330374 NRXN1Q9ULB1 1477 aa9.57□□□□□ -0.88
VMA21-201ENST00000330374 PRDM4Q9UKN5 801 aa9.57□□□□□ -0.88
VMA21-201ENST00000330374 LRRC7Q96NW7 1537 aa9.57□□□□□ -0.88
VMA21-201ENST00000330374 MYO3AQ8NEV4 1616 aa9.57□□□□□ -0.88
VMA21-201ENST00000330374 MAP4K4O95819 1239 aaPredicted RBP9.56□□□□□ -0.88
VMA21-201ENST00000330374 MBD3O95983 291 aa9.56□□□□□ -0.88
VMA21-201ENST00000330374 DEPDC5O75140 1603 aa9.56□□□□□ -0.88
VMA21-201ENST00000330374 NCKAP5LQ9HCH0 1330 aa9.56□□□□□ -0.88
VMA21-201ENST00000330374 MSH6P52701 1360 aa9.56□□□□□ -0.88
VMA21-201ENST00000330374 PTCH1Q13635 1447 aa9.56□□□□□ -0.88
VMA21-201ENST00000330374 HCLS1P14317 486 aaPredicted RBP9.56□□□□□ -0.88
VMA21-201ENST00000330374 TERF1P54274 439 aa9.56□□□□□ -0.88
VMA21-201ENST00000330374 GLI2P10070 1586 aa9.55□□□□□ -0.88
VMA21-201ENST00000330374 USP48Q86UV5 1035 aa9.55□□□□□ -0.88
VMA21-201ENST00000330374 CHMP3Q9Y3E7 222 aa9.55□□□□□ -0.88
VMA21-201ENST00000330374 ADGRB3O60242 1522 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms