RNA–Protein interactions for RNA: ENST00000329231.8

ATPAF1-201, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2 BASIC

Gene ATPAF1, Length 1,241 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-201ENST00000329231 RREB1Q92766 1687 aa37.71■■■■□ 3.63
ATPAF1-201ENST00000329231 PER1O15534 1290 aaPredicted RBP37.69■■■■□ 3.62
ATPAF1-201ENST00000329231 NBPF14Q5TI25 921 aa37.69■■■■□ 3.62
ATPAF1-201ENST00000329231 RGPD3A6NKT7 1758 aaPredicted RBP37.69■■■■□ 3.62
ATPAF1-201ENST00000329231 RGPD4Q7Z3J3 1758 aa37.69■■■■□ 3.62
ATPAF1-201ENST00000329231 NHSQ6T4R5 1651 aa37.69■■■■□ 3.62
ATPAF1-201ENST00000329231 R3HDM1Q15032 1099 aaKnown RBP37.68■■■■□ 3.62
ATPAF1-201ENST00000329231 EYA1Q99502 592 aa37.67■■■■□ 3.62
ATPAF1-201ENST00000329231 EIF4A2Q14240 407 aaKnown RBP37.66■■■■□ 3.62
ATPAF1-201ENST00000329231 NCAPD2Q15021 1401 aa37.66■■■■□ 3.62
ATPAF1-201ENST00000329231 NUP188Q5SRE5 1749 aa37.64■■■■□ 3.62
ATPAF1-201ENST00000329231 PCDH11XQ9BZA7 1347 aa37.61■■■■□ 3.61
ATPAF1-201ENST00000329231 PCDH11YQ9BZA8 1340 aa37.61■■■■□ 3.61
ATPAF1-201ENST00000329231 SHANK3Q9BYB0 1731 aa37.61■■■■□ 3.61
ATPAF1-201ENST00000329231 PROM2Q8N271 834 aa37.6■■■■□ 3.61
ATPAF1-201ENST00000329231 TXNRD1Q16881 649 aa37.59■■■■□ 3.61
ATPAF1-201ENST00000329231 KAT6BQ8WYB5 2073 aa37.59■■■■□ 3.61
ATPAF1-201ENST00000329231 CC2D1BQ5T0F9 858 aaKnown RBP37.58■■■■□ 3.61
ATPAF1-201ENST00000329231 PRIM1P49642 420 aaKnown RBP37.56■■■■□ 3.6
ATPAF1-201ENST00000329231 SYTL4Q96C24 671 aaPredicted RBP37.56■■■■□ 3.6
ATPAF1-201ENST00000329231 NPC1L1Q9UHC9 1359 aa37.55■■■■□ 3.6
ATPAF1-201ENST00000329231 SPG7Q9UQ90 795 aa37.55■■■■□ 3.6
ATPAF1-201ENST00000329231 BTAF1O14981 1849 aa37.53■■■■□ 3.6
ATPAF1-201ENST00000329231 IGSF1Q8N6C5 1336 aa37.53■■■■□ 3.6
ATPAF1-201ENST00000329231 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP37.52■■■■□ 3.6
ATPAF1-201ENST00000329231 CYP27B1O15528 508 aa37.51■■■■□ 3.6
ATPAF1-201ENST00000329231 PKD1L3Q7Z443 1732 aa37.49■■■■□ 3.59
ATPAF1-201ENST00000329231 DOT1LQ8TEK3 1739 aa37.49■■■■□ 3.59
ATPAF1-201ENST00000329231 PLEKHG2Q9H7P9 1386 aa37.48■■■■□ 3.59
ATPAF1-201ENST00000329231 MTHFSP49914 203 aa37.48■■■■□ 3.59
ATPAF1-201ENST00000329231 SRCAPQ6ZRS2 3230 aa37.48■■■■□ 3.59
ATPAF1-201ENST00000329231 ANO8Q9HCE9 1232 aaPredicted RBP37.47■■■■□ 3.59
ATPAF1-201ENST00000329231 CNGB1Q14028 1251 aaPredicted RBP37.44■■■■□ 3.58
ATPAF1-201ENST00000329231 IL13P35225 146 aa37.43■■■■□ 3.58
ATPAF1-201ENST00000329231 STK32BQ9NY57 414 aa37.43■■■■□ 3.58
ATPAF1-201ENST00000329231 NKX1-1Q15270 411 aaPredicted RBP37.42■■■■□ 3.58
ATPAF1-201ENST00000329231 LRP5O75197 1615 aa37.42■■■■□ 3.58
ATPAF1-201ENST00000329231 SLC27A3Q5K4L6 730 aa37.4■■■■□ 3.58
ATPAF1-201ENST00000329231 IFNL2Q8IZJ0 200 aa37.4■■■■□ 3.58
ATPAF1-201ENST00000329231 SLC15A2Q16348 729 aa37.38■■■■□ 3.57
ATPAF1-201ENST00000329231 PHKG2P15735 406 aa37.37■■■■□ 3.57
ATPAF1-201ENST00000329231 PLEKHO1Q53GL0 409 aaPredicted RBP37.37■■■■□ 3.57
ATPAF1-201ENST00000329231 SULT6B1Q6IMI4 303 aa37.36■■■■□ 3.57
ATPAF1-201ENST00000329231 AEBP1Q8IUX7 1158 aa37.36■■■■□ 3.57
ATPAF1-201ENST00000329231 LRRC4BQ9NT99 713 aa37.36■■■■□ 3.57
ATPAF1-201ENST00000329231 AMOTQ4VCS5 1084 aa37.35■■■■□ 3.57
ATPAF1-201ENST00000329231 MPRIPQ6WCQ1 1025 aa37.35■■■■□ 3.57
ATPAF1-201ENST00000329231 KDRP35968 1356 aa37.33■■■■□ 3.57
ATPAF1-201ENST00000329231 DIAPH1O60610 1272 aaKnown RBP37.32■■■■□ 3.56
ATPAF1-201ENST00000329231 PAPPAQ13219 1627 aa37.29■■■■□ 3.56
ATPAF1-201ENST00000329231 TOGARAM1Q9Y4F4 1720 aa37.29■■■■□ 3.56
ATPAF1-201ENST00000329231 HSP90AB1P08238 724 aaKnown RBP37.28■■■■□ 3.56
ATPAF1-201ENST00000329231 CCNL1Q9UK58 526 aaPredicted RBP37.28■■■■□ 3.56
ATPAF1-201ENST00000329231 ZNF530Q6P9A1 599 aaPredicted RBP37.27■■■■□ 3.56
ATPAF1-201ENST00000329231 SPON1Q9HCB6 807 aa37.27■■■■□ 3.56
ATPAF1-201ENST00000329231 LY75O60449 1722 aa37.27■■■■□ 3.56
ATPAF1-201ENST00000329231 PIGBQ92521 554 aa37.26■■■■□ 3.56
ATPAF1-201ENST00000329231 SMARCC1Q92922 1105 aaPredicted RBP37.26■■■■□ 3.56
ATPAF1-201ENST00000329231 ZEB1P37275 1124 aaPredicted RBP37.25■■■■□ 3.55
ATPAF1-201ENST00000329231 KCNQ4P56696 695 aa37.25■■■■□ 3.55
ATPAF1-201ENST00000329231 TMOD3Q9NYL9 352 aa37.25■■■■□ 3.55
ATPAF1-201ENST00000329231 ZNF827Q17R98 1081 aa37.24■■■■□ 3.55
ATPAF1-201ENST00000329231 DCAF5Q96JK2 942 aa37.24■■■■□ 3.55
ATPAF1-201ENST00000329231 PALLDQ8WX93 1383 aa37.24■■■■□ 3.55
ATPAF1-201ENST00000329231 ITGB4P16144 1822 aa37.23■■■■□ 3.55
ATPAF1-201ENST00000329231 PDGFDQ9GZP0 370 aaPredicted RBP37.23■■■■□ 3.55
ATPAF1-201ENST00000329231 HMGB2P26583 209 aaKnown RBP37.22■■■■□ 3.55
ATPAF1-201ENST00000329231 C1orf141Q5JVX7 400 aa37.22■■■■□ 3.55
ATPAF1-201ENST00000329231 AKT1S1Q96B36 256 aa37.22■■■■□ 3.55
ATPAF1-201ENST00000329231 CASZ1Q86V15 1759 aa37.22■■■■□ 3.55
ATPAF1-201ENST00000329231 HMOX1P09601 288 aa37.21■■■■□ 3.55
ATPAF1-201ENST00000329231 CFAP53Q96M91 514 aa37.2■■■■□ 3.55
ATPAF1-201ENST00000329231 COL3A1P02461 1466 aaPredicted RBP37.2■■■■□ 3.54
ATPAF1-201ENST00000329231 ERVV-2B6SEH9 535 aa37.19■■■■□ 3.54
ATPAF1-201ENST00000329231 ZBTB7AO95365 584 aa37.16■■■■□ 3.54
ATPAF1-201ENST00000329231 PPP2R1AP30153 589 aa37.16■■■■□ 3.54
ATPAF1-201ENST00000329231 TFCP2L1Q9NZI6 479 aa37.16■■■■□ 3.54
ATPAF1-201ENST00000329231 U2SURPO15042 1029 aaKnown RBP37.15■■■■□ 3.54
ATPAF1-201ENST00000329231 KDM6AO15550 1401 aaPredicted RBP37.12■■■■□ 3.53
ATPAF1-201ENST00000329231 MTFR1LQ9H019 292 aa37.12■■■■□ 3.53
ATPAF1-201ENST00000329231 PPP1R1BQ9UD71 204 aaPredicted RBP37.12■■■■□ 3.53
ATPAF1-201ENST00000329231 ASAP1Q9ULH1 1129 aa37.12■■■■□ 3.53
ATPAF1-201ENST00000329231 CABP4P57796 275 aa37.11■■■■□ 3.53
ATPAF1-201ENST00000329231 AKAP4Q5JQC9 854 aa37.11■■■■□ 3.53
ATPAF1-201ENST00000329231 ATF5Q9Y2D1 282 aaPredicted RBP37.1■■■■□ 3.53
ATPAF1-201ENST00000329231 LOC102724428A0A0B4J2F2 783 aa37.08■■■■□ 3.53
ATPAF1-201ENST00000329231 SIK1P57059 783 aa37.08■■■■□ 3.53
ATPAF1-201ENST00000329231 ATG3Q9NT62 314 aa37.08■■■■□ 3.53
ATPAF1-201ENST00000329231 NUDCQ9Y266 331 aa37.08■■■■□ 3.53
ATPAF1-201ENST00000329231 PNPLA7Q6ZV29 1317 aa37.08■■■■□ 3.53
ATPAF1-201ENST00000329231 QSER1Q2KHR3 1735 aa37.05■■■■□ 3.52
ATPAF1-201ENST00000329231 SLC16A10Q8TF71 515 aa37.05■■■■□ 3.52
ATPAF1-201ENST00000329231 C5P01031 1676 aa37.05■■■■□ 3.52
ATPAF1-201ENST00000329231 MTHFSDQ2M296 383 aaKnown RBP37.04■■■■□ 3.52
ATPAF1-201ENST00000329231 PTGER2P43116 358 aa37.03■■■■□ 3.52
ATPAF1-201ENST00000329231 DDX10Q13206 875 aaKnown RBP37.01■■■■□ 3.52
ATPAF1-201ENST00000329231 NFATC2IPQ8NCF5 419 aa37.01■■■■□ 3.52
ATPAF1-201ENST00000329231 ATP6V1AP38606 617 aa37■■■■□ 3.51
ATPAF1-201ENST00000329231 TAF1LQ8IZX4 1826 aa36.99■■■■□ 3.51
ATPAF1-201ENST00000329231 AK7Q96M32 723 aa36.98■■■■□ 3.51
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms