RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 ANKRD44Q8N8A2 993 aa27.23■■□□□ 1.95
SHMT1-201ENST00000316694 OTUD7AQ8TE49 926 aaPredicted RBP27.22■■□□□ 1.95
SHMT1-201ENST00000316694 SSFA2P28290 1259 aa27.21■■□□□ 1.95
SHMT1-201ENST00000316694 HAP1P54257 671 aaPredicted RBP27.21■■□□□ 1.95
SHMT1-201ENST00000316694 ATP10DQ9P241 1426 aa27.2■■□□□ 1.95
SHMT1-201ENST00000316694 KIF13AQ9H1H9 1805 aa27.2■■□□□ 1.95
SHMT1-201ENST00000316694 CHL1O00533 1208 aa27.2■■□□□ 1.94
SHMT1-201ENST00000316694 MSH6P52701 1360 aa27.2■■□□□ 1.94
SHMT1-201ENST00000316694 RGS12O14924 1447 aa27.2■■□□□ 1.94
SHMT1-201ENST00000316694 SOX12O15370 315 aa27.19■■□□□ 1.94
SHMT1-201ENST00000316694 SKOR2Q2VWA4 1001 aaPredicted RBP27.19■■□□□ 1.94
SHMT1-201ENST00000316694 CEP85Q6P2H3 762 aa27.19■■□□□ 1.94
SHMT1-201ENST00000316694 ACEP12821 1306 aa27.18■■□□□ 1.94
SHMT1-201ENST00000316694 SMARCA5O60264 1052 aaPredicted RBP27.18■■□□□ 1.94
SHMT1-201ENST00000316694 RPAP2Q8IXW5 612 aaPredicted RBP27.18■■□□□ 1.94
SHMT1-201ENST00000316694 LTKP29376 864 aa27.18■■□□□ 1.94
SHMT1-201ENST00000316694 ISY1Q9ULR0 285 aaKnown RBP27.18■■□□□ 1.94
SHMT1-201ENST00000316694 NRKQ7Z2Y5 1582 aa27.18■■□□□ 1.94
SHMT1-201ENST00000316694 TTC21BQ7Z4L5 1316 aa27.17■■□□□ 1.94
SHMT1-201ENST00000316694 RABEP1Q15276 862 aa27.17■■□□□ 1.94
SHMT1-201ENST00000316694 HSP90AB2PQ58FF8 381 aa27.17■■□□□ 1.94
SHMT1-201ENST00000316694 ADAMTS13Q76LX8 1427 aa27.17■■□□□ 1.94
SHMT1-201ENST00000316694 UBR1Q8IWV7 1749 aa27.17■■□□□ 1.94
SHMT1-201ENST00000316694 MEIS3Q99687 375 aa27.17■■□□□ 1.94
SHMT1-201ENST00000316694 PTMSP20962 102 aa27.16■■□□□ 1.94
SHMT1-201ENST00000316694 GAS2L3Q86XJ1 694 aa27.16■■□□□ 1.94
SHMT1-201ENST00000316694 USP26Q9BXU7 913 aa27.15■■□□□ 1.94
SHMT1-201ENST00000316694 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.15■■□□□ 1.94
SHMT1-201ENST00000316694 RTL1A6NKG5 1358 aa27.15■■□□□ 1.94
SHMT1-201ENST00000316694 MIS18AQ9NYP9 233 aa27.15■■□□□ 1.94
SHMT1-201ENST00000316694 AK9Q5TCS8 1911 aa27.15■■□□□ 1.94
SHMT1-201ENST00000316694 SLC4A2P04920 1241 aa27.14■■□□□ 1.94
SHMT1-201ENST00000316694 SDSP20132 328 aa27.14■■□□□ 1.94
SHMT1-201ENST00000316694 SLC26A8Q96RN1 970 aa27.14■■□□□ 1.94
SHMT1-201ENST00000316694 PTPRCP08575 1304 aa27.14■■□□□ 1.94
SHMT1-201ENST00000316694 GOLGA6L22H0YM25 854 aa27.14■■□□□ 1.93
SHMT1-201ENST00000316694 KIAA0232Q92628 1395 aa27.14■■□□□ 1.93
SHMT1-201ENST00000316694 CEBPAP49715 358 aaPredicted RBP27.13■■□□□ 1.93
SHMT1-201ENST00000316694 CASC1Q6TDU7 716 aa27.12■■□□□ 1.93
SHMT1-201ENST00000316694 SLC4A10Q6U841 1118 aa27.1■■□□□ 1.93
SHMT1-201ENST00000316694 BAG4O95429 457 aaKnown RBP27.1■■□□□ 1.93
SHMT1-201ENST00000316694 OVOS2A0A0J9YW53 1432 aa27.09■■□□□ 1.93
SHMT1-201ENST00000316694 OVOS2Q6IE36 1432 aa27.09■■□□□ 1.93
SHMT1-201ENST00000316694 FOXO3O43524 673 aa27.09■■□□□ 1.93
SHMT1-201ENST00000316694 PLPPR3Q6T4P5 718 aa27.09■■□□□ 1.93
SHMT1-201ENST00000316694 PLEKHG3A1L390 1219 aa27.08■■□□□ 1.93
SHMT1-201ENST00000316694 CLCN1P35523 988 aa27.08■■□□□ 1.93
SHMT1-201ENST00000316694 DDX49Q9Y6V7 483 aaKnown RBP27.08■■□□□ 1.93
SHMT1-201ENST00000316694 PEAK1Q9H792 1746 aa27.07■■□□□ 1.92
SHMT1-201ENST00000316694 F6X3S4 739 aa27.07■■□□□ 1.92
SHMT1-201ENST00000316694 USP6P35125 1406 aa27.07■■□□□ 1.92
SHMT1-201ENST00000316694 CRB1P82279 1406 aa27.07■■□□□ 1.92
SHMT1-201ENST00000316694 CLEC17AQ6ZS10 378 aa27.06■■□□□ 1.92
SHMT1-201ENST00000316694 G2E3Q7L622 706 aa27.06■■□□□ 1.92
SHMT1-201ENST00000316694 TSPYL4Q9UJ04 414 aa27.06■■□□□ 1.92
SHMT1-201ENST00000316694 PTPRUQ92729 1446 aa27.05■■□□□ 1.92
SHMT1-201ENST00000316694 PLEKHG1Q9ULL1 1385 aa27.05■■□□□ 1.92
SHMT1-201ENST00000316694 HMMRO75330 724 aa27.05■■□□□ 1.92
SHMT1-201ENST00000316694 RTF1Q92541 710 aaKnown RBP27.05■■□□□ 1.92
SHMT1-201ENST00000316694 MAP3K19Q56UN5 1328 aa27.05■■□□□ 1.92
SHMT1-201ENST00000316694 TRIM44Q96DX7 344 aaPredicted RBP27.05■■□□□ 1.92
SHMT1-201ENST00000316694 MCTP1Q6DN14 999 aa27.04■■□□□ 1.92
SHMT1-201ENST00000316694 MTHFSDQ2M296 383 aaKnown RBP27.04■■□□□ 1.92
SHMT1-201ENST00000316694 ST18O60284 1047 aa27.03■■□□□ 1.92
SHMT1-201ENST00000316694 REC8O95072 547 aa27.03■■□□□ 1.92
SHMT1-201ENST00000316694 NUCB2P80303 420 aa27.03■■□□□ 1.92
SHMT1-201ENST00000316694 KLHL40Q2TBA0 621 aa27.03■■□□□ 1.92
SHMT1-201ENST00000316694 TOPAZ1Q8N9V7 1692 aa27.03■■□□□ 1.92
SHMT1-201ENST00000316694 PKP1Q13835 747 aa27.02■■□□□ 1.92
SHMT1-201ENST00000316694 RGPD1P0DJD0 1748 aa27.02■■□□□ 1.92
SHMT1-201ENST00000316694 ESPNB1AK53 854 aa27.01■■□□□ 1.92
SHMT1-201ENST00000316694 NAP1L5Q96NT1 182 aaPredicted RBP27.01■■□□□ 1.92
SHMT1-201ENST00000316694 AMOTL2Q9Y2J4 779 aa27.01■■□□□ 1.92
SHMT1-201ENST00000316694 RIMS1Q86UR5 1692 aaKnown RBP27■■□□□ 1.91
SHMT1-201ENST00000316694 ERBB4Q15303 1308 aa27■■□□□ 1.91
SHMT1-201ENST00000316694 ERC2O15083 957 aa27■■□□□ 1.91
SHMT1-201ENST00000316694 CCT4P50991 539 aaKnown RBP26.99■■□□□ 1.91
SHMT1-201ENST00000316694 ZGPATQ8N5A5 531 aaKnown RBP26.99■■□□□ 1.91
SHMT1-201ENST00000316694 NCLP19338 710 aaKnown RBP26.99■■□□□ 1.91
SHMT1-201ENST00000316694 NALCNQ8IZF0 1738 aa26.98■■□□□ 1.91
SHMT1-201ENST00000316694 ARHGEF10O15013 1369 aa26.98■■□□□ 1.91
SHMT1-201ENST00000316694 USP31Q70CQ4 1352 aa26.98■■□□□ 1.91
SHMT1-201ENST00000316694 PDE1AP54750 535 aa26.98■■□□□ 1.91
SHMT1-201ENST00000316694 EXOC6BQ9Y2D4 811 aa26.98■■□□□ 1.91
SHMT1-201ENST00000316694 EID1Q9Y6B2 187 aa26.98■■□□□ 1.91
SHMT1-201ENST00000316694 TSHZ3Q63HK5 1081 aa26.97■■□□□ 1.91
SHMT1-201ENST00000316694 CYP2E1P05181 493 aaPredicted RBP26.97■■□□□ 1.91
SHMT1-201ENST00000316694 NASPP49321 788 aaPredicted RBP26.96■■□□□ 1.91
SHMT1-201ENST00000316694 SSH2Q76I76 1423 aa26.96■■□□□ 1.91
SHMT1-201ENST00000316694 GNAI2P04899 355 aa26.96■■□□□ 1.91
SHMT1-201ENST00000316694 STK31Q9BXU1 1019 aa26.96■■□□□ 1.91
SHMT1-201ENST00000316694 CWC22Q9HCG8 908 aaKnown RBP26.96■■□□□ 1.91
SHMT1-201ENST00000316694 AMPHP49418 695 aa26.94■■□□□ 1.9
SHMT1-201ENST00000316694 CAVIN1Q6NZI2 390 aaKnown RBP26.94■■□□□ 1.9
SHMT1-201ENST00000316694 NGDNQ8NEJ9 315 aaKnown RBP26.94■■□□□ 1.9
SHMT1-201ENST00000316694 NECTIN2Q92692 538 aa26.94■■□□□ 1.9
SHMT1-201ENST00000316694 OSBPL3Q9H4L5 887 aa26.94■■□□□ 1.9
SHMT1-201ENST00000316694 PRKCSHP14314 528 aaPredicted RBP26.93■■□□□ 1.9
SHMT1-201ENST00000316694 RGPD8O14715 1765 aaPredicted RBP26.93■■□□□ 1.9
SHMT1-201ENST00000316694 FLT4P35916 1363 aa26.93■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms