RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 AKAP2Q9Y2D5 859 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 C9orf78Q9NZ63 289 aaPredicted RBP4.75□□□□□ -1.65
USH2A-201ENST00000307340 ARHGEF11O15085 1522 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 TPD52L1Q16890 204 aaPredicted RBP4.75□□□□□ -1.65
USH2A-201ENST00000307340 CCDC112Q8NEF3 446 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 RAD50Q92878 1312 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 USP5P45974 858 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 TMTC2Q8N394 836 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 THEMISQ8N1K5 641 aaPredicted RBP4.75□□□□□ -1.65
USH2A-201ENST00000307340 PLEKHG2Q9H7P9 1386 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 DEKP35659 375 aaKnown RBP4.75□□□□□ -1.65
USH2A-201ENST00000307340 PRPHP41219 470 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 ZSCAN16Q9H4T2 348 aaPredicted RBP4.75□□□□□ -1.65
USH2A-201ENST00000307340 ST20-MTHFSA0A0A6YYL1 179 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 LEKR1Q6ZMV7 388 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 MICALCLQ6ZW33 695 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 VPS36Q86VN1 386 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 ITSN1Q15811 1721 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 SLF2Q8IX21 1173 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 NACAP1Q9BZK3 213 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 TRIM6-TRIM34B2RNG4 842 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 CNGA1P29973 690 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 TRIM22Q8IYM9 498 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 KIF4AO95239 1232 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 PDE4AP27815 886 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 IFI16Q16666 785 aaKnown RBP4.75□□□□□ -1.65
USH2A-201ENST00000307340 TTC37Q6PGP7 1564 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 TAF7LQ5H9L4 462 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 TBC1D2BQ9UPU7 963 aa4.75□□□□□ -1.65
USH2A-201ENST00000307340 NASPP49321 788 aaPredicted RBP4.74□□□□□ -1.65
USH2A-201ENST00000307340 WDR78Q5VTH9 848 aa4.74□□□□□ -1.65
USH2A-201ENST00000307340 KCNH8Q96L42 1107 aa4.74□□□□□ -1.65
USH2A-201ENST00000307340 CT47A1Q5JQC4 288 aaPredicted RBP4.74□□□□□ -1.65
USH2A-201ENST00000307340 IFT57Q9NWB7 429 aa4.74□□□□□ -1.65
USH2A-201ENST00000307340 UVSSAQ2YD98 709 aa4.74□□□□□ -1.65
USH2A-201ENST00000307340 CCDC12Q8WUD4 166 aaPredicted RBP4.74□□□□□ -1.65
USH2A-201ENST00000307340 CTAGE1Q96RT6 745 aa4.74□□□□□ -1.65
USH2A-201ENST00000307340 CFAP65Q6ZU64 1925 aaKnown RBP4.74□□□□□ -1.65
USH2A-201ENST00000307340 FERMT1Q9BQL6 677 aa4.74□□□□□ -1.65
USH2A-201ENST00000307340 TDRD9Q8NDG6 1382 aaKnown RBP4.74□□□□□ -1.65
USH2A-201ENST00000307340 TAOK3Q9H2K8 898 aa4.74□□□□□ -1.65
USH2A-201ENST00000307340 KCNG1Q9UIX4 513 aa4.74□□□□□ -1.65
USH2A-201ENST00000307340 IQGAP3Q86VI3 1631 aa4.74□□□□□ -1.65
USH2A-201ENST00000307340 IFIT2P09913 472 aaKnown RBP4.74□□□□□ -1.65
USH2A-201ENST00000307340 CC2D1BQ5T0F9 858 aaKnown RBP4.74□□□□□ -1.65
USH2A-201ENST00000307340 RRP12Q5JTH9 1297 aaKnown RBP4.74□□□□□ -1.65
USH2A-201ENST00000307340 CETN2P41208 172 aa4.73□□□□□ -1.65
USH2A-201ENST00000307340 HSP90AB3PQ58FF7 597 aa4.73□□□□□ -1.65
USH2A-201ENST00000307340 CALR3Q96L12 384 aaKnown RBP4.73□□□□□ -1.65
USH2A-201ENST00000307340 TRPM2O94759 1503 aa4.73□□□□□ -1.65
USH2A-201ENST00000307340 ABCD1P33897 745 aa4.73□□□□□ -1.65
USH2A-201ENST00000307340 PNMA2Q9UL42 364 aa4.73□□□□□ -1.65
USH2A-201ENST00000307340 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.73□□□□□ -1.65
USH2A-201ENST00000307340 TTC21AQ8NDW8 1320 aa4.73□□□□□ -1.65
USH2A-201ENST00000307340 ZSCAN12O43309 604 aa4.73□□□□□ -1.65
USH2A-201ENST00000307340 KRT85P78386 507 aa4.73□□□□□ -1.65
USH2A-201ENST00000307340 TTF1Q15361 905 aaPredicted RBP4.73□□□□□ -1.65
USH2A-201ENST00000307340 SETBP1Q9Y6X0 1596 aa4.73□□□□□ -1.65
USH2A-201ENST00000307340 GNAI2P04899 355 aa4.73□□□□□ -1.65
USH2A-201ENST00000307340 GLT8D2Q9H1C3 349 aa4.73□□□□□ -1.65
USH2A-201ENST00000307340 RNF214Q8ND24 703 aa4.73□□□□□ -1.65
USH2A-201ENST00000307340 C22orf23Q9BZE7 217 aa4.73□□□□□ -1.65
USH2A-201ENST00000307340 STMN4Q9H169 189 aaPredicted RBP4.73□□□□□ -1.65
USH2A-201ENST00000307340 BMP2KLQ5H9B9 411 aa4.73□□□□□ -1.65
USH2A-201ENST00000307340 STK11IPQ8N1F8 1099 aa4.73□□□□□ -1.65
USH2A-201ENST00000307340 INTS4Q96HW7 963 aaKnown RBP4.73□□□□□ -1.65
USH2A-201ENST00000307340 CCDC94Q9BW85 323 aaPredicted RBP4.73□□□□□ -1.65
USH2A-201ENST00000307340 NEO1Q92859 1461 aa4.73□□□□□ -1.65
USH2A-201ENST00000307340 G3BP1Q13283 466 aaKnown RBP eCLIP4.73□□□□□ -1.65
USH2A-201ENST00000307340 MCTP2Q6DN12 878 aa4.73□□□□□ -1.65
USH2A-201ENST00000307340 NAA15Q9BXJ9 866 aaKnown RBP4.73□□□□□ -1.65
USH2A-201ENST00000307340 RGS3P49796 1198 aa4.73□□□□□ -1.65
USH2A-201ENST00000307340 BMP2KQ9NSY1 1161 aaPredicted RBP4.73□□□□□ -1.65
USH2A-201ENST00000307340 USP25Q9UHP3 1055 aa4.73□□□□□ -1.65
USH2A-201ENST00000307340 FANCAO15360 1455 aa4.72□□□□□ -1.65
USH2A-201ENST00000307340 INO80Q9ULG1 1556 aaPredicted RBP4.72□□□□□ -1.65
USH2A-201ENST00000307340 RNF17Q9BXT8 1623 aaKnown RBP4.72□□□□□ -1.65
USH2A-201ENST00000307340 ZC3H15Q8WU90 426 aaKnown RBP4.72□□□□□ -1.65
USH2A-201ENST00000307340 UHRF1BP1LA0JNW5 1464 aa4.72□□□□□ -1.65
USH2A-201ENST00000307340 HNRNPMP52272 730 aaKnown RBP eCLIP4.72□□□□□ -1.65
USH2A-201ENST00000307340 WWC2Q6AWC2 1192 aa4.72□□□□□ -1.65
USH2A-201ENST00000307340 DYNC1I1O14576 645 aa4.72□□□□□ -1.65
USH2A-201ENST00000307340 IVLP07476 585 aa4.72□□□□□ -1.65
USH2A-201ENST00000307340 EPS15P42566 896 aa4.72□□□□□ -1.65
USH2A-201ENST00000307340 SMC3Q9UQE7 1217 aa4.72□□□□□ -1.65
USH2A-201ENST00000307340 CAMSAP1Q5T5Y3 1602 aa4.72□□□□□ -1.65
USH2A-201ENST00000307340 PANK3Q9H999 370 aa4.72□□□□□ -1.65
USH2A-201ENST00000307340 PRG4Q92954 1404 aaPredicted RBP4.72□□□□□ -1.65
USH2A-201ENST00000307340 ATF7IPQ6VMQ6 1270 aa4.72□□□□□ -1.65
USH2A-201ENST00000307340 PPP2R5EQ16537 467 aa4.72□□□□□ -1.65
USH2A-201ENST00000307340 HSP90AB2PQ58FF8 381 aa4.72□□□□□ -1.65
USH2A-201ENST00000307340 SSH2Q76I76 1423 aa4.72□□□□□ -1.65
USH2A-201ENST00000307340 RNF41Q9H4P4 317 aaPredicted RBP4.72□□□□□ -1.65
USH2A-201ENST00000307340 KDM5BQ9UGL1 1544 aa4.72□□□□□ -1.65
USH2A-201ENST00000307340 IBTKQ9P2D0 1353 aaPredicted RBP4.72□□□□□ -1.65
USH2A-201ENST00000307340 AMPD3Q01432 767 aa4.72□□□□□ -1.65
USH2A-201ENST00000307340 STXBP4Q6ZWJ1 553 aa4.72□□□□□ -1.65
USH2A-201ENST00000307340 PLEKHO1Q53GL0 409 aaPredicted RBP4.72□□□□□ -1.65
USH2A-201ENST00000307340 C10orf67Q8IYJ2 551 aa4.72□□□□□ -1.65
USH2A-201ENST00000307340 FRMPD1Q5SYB0 1578 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms