RNA–Protein interactions for RNA: ENST00000303406.4

HOXC4-201, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-201ENST00000303406 HDAC1Q13547 482 aaPredicted RBP24.71■■□□□ 1.55
HOXC4-201ENST00000303406 ALS2Q96Q42 1657 aa24.71■■□□□ 1.55
HOXC4-201ENST00000303406 MCM10Q7L590 875 aa24.71■■□□□ 1.55
HOXC4-201ENST00000303406 API5Q9BZZ5 524 aaKnown RBP24.71■■□□□ 1.55
HOXC4-201ENST00000303406 NCAPD2Q15021 1401 aa24.7■■□□□ 1.54
HOXC4-201ENST00000303406 TMEM94Q12767 1356 aa24.7■■□□□ 1.54
HOXC4-201ENST00000303406 ABCC4O15439 1325 aa24.7■■□□□ 1.54
HOXC4-201ENST00000303406 FAM161AQ3B820 660 aa24.7■■□□□ 1.54
HOXC4-201ENST00000303406 ZBTB40Q9NUA8 1239 aa24.7■■□□□ 1.54
HOXC4-201ENST00000303406 BABAM1Q9NWV8 329 aa24.7■■□□□ 1.54
HOXC4-201ENST00000303406 FOXO3O43524 673 aa24.68■■□□□ 1.54
HOXC4-201ENST00000303406 KRT28Q7Z3Y7 464 aa24.68■■□□□ 1.54
HOXC4-201ENST00000303406 SKAP1Q86WV1 359 aa24.68■■□□□ 1.54
HOXC4-201ENST00000303406 CAMTA1Q9Y6Y1 1673 aa24.67■■□□□ 1.54
HOXC4-201ENST00000303406 MAP3K5Q99683 1374 aa24.67■■□□□ 1.54
HOXC4-201ENST00000303406 SOS1Q07889 1333 aaPredicted RBP24.67■■□□□ 1.54
HOXC4-201ENST00000303406 GNAT3A8MTJ3 354 aa24.66■■□□□ 1.54
HOXC4-201ENST00000303406 ATF3P18847 181 aa24.66■■□□□ 1.54
HOXC4-201ENST00000303406 ARHGEF25Q86VW2 580 aa24.66■■□□□ 1.54
HOXC4-201ENST00000303406 MSH6P52701 1360 aa24.66■■□□□ 1.54
HOXC4-201ENST00000303406 MSH5O43196 834 aa24.66■■□□□ 1.54
HOXC4-201ENST00000303406 GCP02774 474 aa24.66■■□□□ 1.54
HOXC4-201ENST00000303406 VIRMAQ69YN4 1812 aaKnown RBP24.65■■□□□ 1.54
HOXC4-201ENST00000303406 ELL2O00472 640 aaPredicted RBP24.63■■□□□ 1.53
HOXC4-201ENST00000303406 RGS3P49796 1198 aa24.63■■□□□ 1.53
HOXC4-201ENST00000303406 CADPS2Q86UW7 1296 aa24.63■■□□□ 1.53
HOXC4-201ENST00000303406 PTPRCP08575 1304 aa24.62■■□□□ 1.53
HOXC4-201ENST00000303406 C8orf34Q49A92 452 aa24.61■■□□□ 1.53
HOXC4-201ENST00000303406 LTV1Q96GA3 475 aaPredicted RBP24.61■■□□□ 1.53
HOXC4-201ENST00000303406 TSPYL4Q9UJ04 414 aa24.61■■□□□ 1.53
HOXC4-201ENST00000303406 LMTK3Q96Q04 1460 aa24.61■■□□□ 1.53
HOXC4-201ENST00000303406 ZBTB7BO15156 539 aaPredicted RBP24.61■■□□□ 1.53
HOXC4-201ENST00000303406 IPO9Q96P70 1041 aaKnown RBP24.61■■□□□ 1.53
HOXC4-201ENST00000303406 PDZRN3Q9UPQ7 1066 aa24.61■■□□□ 1.53
HOXC4-201ENST00000303406 ABCC6O95255 1503 aa24.61■■□□□ 1.53
HOXC4-201ENST00000303406 MED1Q15648 1581 aaPredicted RBP24.6■■□□□ 1.53
HOXC4-201ENST00000303406 LMO7Q8WWI1 1683 aa24.6■■□□□ 1.53
HOXC4-201ENST00000303406 SMC5Q8IY18 1101 aa24.6■■□□□ 1.53
HOXC4-201ENST00000303406 NBPF6Q5VWK0 638 aa24.59■■□□□ 1.53
HOXC4-201ENST00000303406 NBPF4Q96M43 638 aa24.59■■□□□ 1.53
HOXC4-201ENST00000303406 CEMIPQ8WUJ3 1361 aa24.58■■□□□ 1.52
HOXC4-201ENST00000303406 RGS12O14924 1447 aa24.57■■□□□ 1.52
HOXC4-201ENST00000303406 NPHP3Q7Z494 1330 aa24.57■■□□□ 1.52
HOXC4-201ENST00000303406 RGPD2P0DJD1 1756 aa24.57■■□□□ 1.52
HOXC4-201ENST00000303406 STRCQ7RTU9 1775 aa24.57■■□□□ 1.52
HOXC4-201ENST00000303406 XIRP1Q702N8 1843 aaKnown RBP24.57■■□□□ 1.52
HOXC4-201ENST00000303406 INTS3Q68E01 1043 aaKnown RBP24.56■■□□□ 1.52
HOXC4-201ENST00000303406 OVOS2A0A0G2JMS6 1433 aa24.56■■□□□ 1.52
HOXC4-201ENST00000303406 XPCQ01831 940 aaPredicted RBP24.56■■□□□ 1.52
HOXC4-201ENST00000303406 TAF7Q15545 349 aaPredicted RBP24.55■■□□□ 1.52
HOXC4-201ENST00000303406 AMOTQ4VCS5 1084 aa24.55■■□□□ 1.52
HOXC4-201ENST00000303406 IL17REQ8NFR9 667 aa24.55■■□□□ 1.52
HOXC4-201ENST00000303406 PLEKHG2Q9H7P9 1386 aa24.54■■□□□ 1.52
HOXC4-201ENST00000303406 KRT24Q2M2I5 525 aa24.54■■□□□ 1.52
HOXC4-201ENST00000303406 TNS3Q68CZ2 1445 aa24.54■■□□□ 1.52
HOXC4-201ENST00000303406 HSPA2P54652 639 aa24.53■■□□□ 1.52
HOXC4-201ENST00000303406 PLEKHO1Q53GL0 409 aaPredicted RBP24.53■■□□□ 1.52
HOXC4-201ENST00000303406 USHBP1Q8N6Y0 703 aa24.53■■□□□ 1.52
HOXC4-201ENST00000303406 PXDNQ92626 1479 aa24.53■■□□□ 1.52
HOXC4-201ENST00000303406 FAM208AQ9UK61 1670 aaKnown RBP24.53■■□□□ 1.52
HOXC4-201ENST00000303406 CACNA1FO60840 1977 aa24.53■■□□□ 1.52
HOXC4-201ENST00000303406 ANKRD24Q8TF21 1146 aa24.52■■□□□ 1.52
HOXC4-201ENST00000303406 CRYBG1Q9Y4K1 1723 aa24.51■■□□□ 1.51
HOXC4-201ENST00000303406 ANP32EQ9BTT0 268 aa24.51■■□□□ 1.51
HOXC4-201ENST00000303406 AKAP4Q5JQC9 854 aa24.51■■□□□ 1.51
HOXC4-201ENST00000303406 LMOD2Q6P5Q4 547 aa24.51■■□□□ 1.51
HOXC4-201ENST00000303406 NOP58Q9Y2X3 529 aaKnown RBP24.51■■□□□ 1.51
HOXC4-201ENST00000303406 KDM3BQ7LBC6 1761 aa24.5■■□□□ 1.51
HOXC4-201ENST00000303406 KDM4FA0A1W2PPD8 638 aa24.5■■□□□ 1.51
HOXC4-201ENST00000303406 GCC1Q96CN9 775 aa24.5■■□□□ 1.51
HOXC4-201ENST00000303406 COL18A1P39060 1754 aa24.49■■□□□ 1.51
HOXC4-201ENST00000303406 ERICH6Q7L0X2 663 aa24.49■■□□□ 1.51
HOXC4-201ENST00000303406 DDRGK1Q96HY6 314 aa24.49■■□□□ 1.51
HOXC4-201ENST00000303406 MIS18AQ9NYP9 233 aa24.49■■□□□ 1.51
HOXC4-201ENST00000303406 CHMP4AQ9BY43 222 aa24.48■■□□□ 1.51
HOXC4-201ENST00000303406 ZBTB7CA1YPR0 619 aa24.47■■□□□ 1.51
HOXC4-201ENST00000303406 CCDC30Q5VVM6 783 aa24.47■■□□□ 1.51
HOXC4-201ENST00000303406 ADAMTS7Q9UKP4 1686 aa24.47■■□□□ 1.51
HOXC4-201ENST00000303406 ERBB3P21860 1342 aa24.47■■□□□ 1.51
HOXC4-201ENST00000303406 SLC4A2P04920 1241 aa24.46■■□□□ 1.51
HOXC4-201ENST00000303406 HOXB7P09629 217 aa24.46■■□□□ 1.51
HOXC4-201ENST00000303406 NUCB1Q02818 461 aa24.46■■□□□ 1.51
HOXC4-201ENST00000303406 LRRC59Q96AG4 307 aaKnown RBP24.46■■□□□ 1.51
HOXC4-201ENST00000303406 STK31Q9BXU1 1019 aa24.46■■□□□ 1.51
HOXC4-201ENST00000303406 SPATA31A3Q5VYP0 1347 aa24.46■■□□□ 1.51
HOXC4-201ENST00000303406 N4BP2Q86UW6 1770 aaPredicted RBP24.45■■□□□ 1.51
HOXC4-201ENST00000303406 RGPD5Q99666 1765 aa24.45■■□□□ 1.51
HOXC4-201ENST00000303406 NPM2Q86SE8 214 aaKnown RBP24.45■■□□□ 1.5
HOXC4-201ENST00000303406 ZBTB47Q9UFB7 747 aaPredicted RBP24.45■■□□□ 1.5
HOXC4-201ENST00000303406 ZNF530Q6P9A1 599 aaPredicted RBP24.44■■□□□ 1.5
HOXC4-201ENST00000303406 CPDO75976 1380 aa24.44■■□□□ 1.5
HOXC4-201ENST00000303406 CCT4P50991 539 aaKnown RBP24.43■■□□□ 1.5
HOXC4-201ENST00000303406 AXIN2Q9Y2T1 843 aa24.43■■□□□ 1.5
HOXC4-201ENST00000303406 PXDNLA1KZ92 1463 aa24.43■■□□□ 1.5
HOXC4-201ENST00000303406 C1orf141Q5JVX7 400 aa24.4■■□□□ 1.5
HOXC4-201ENST00000303406 RPAP2Q8IXW5 612 aaPredicted RBP24.4■■□□□ 1.5
HOXC4-201ENST00000303406 CHD1LQ86WJ1 897 aa24.4■■□□□ 1.5
HOXC4-201ENST00000303406 SIPA1L3O60292 1781 aaPredicted RBP24.39■■□□□ 1.5
HOXC4-201ENST00000303406 ATP10DQ9P241 1426 aa24.39■■□□□ 1.5
HOXC4-201ENST00000303406 SIRT2Q8IXJ6 389 aa24.39■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms