RNA–Protein interactions for RNA: ENST00000299333.7

SCN3B-201, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-201ENST00000299333 DNAAF4Q8WXU2 420 aa17.38■□□□□ 0.37
SCN3B-201ENST00000299333 FERMT3Q86UX7 667 aa17.38■□□□□ 0.37
SCN3B-201ENST00000299333 CCDC69A6NI79 296 aa17.38■□□□□ 0.37
SCN3B-201ENST00000299333 IFFO1Q0D2I5 559 aa17.38■□□□□ 0.37
SCN3B-201ENST00000299333 NUP133Q8WUM0 1156 aa17.38■□□□□ 0.37
SCN3B-201ENST00000299333 ATAD2BQ9ULI0 1458 aa17.38■□□□□ 0.37
SCN3B-201ENST00000299333 TMCO5BA8MYB1 307 aa17.38■□□□□ 0.37
SCN3B-201ENST00000299333 MCM3P25205 808 aa17.38■□□□□ 0.37
SCN3B-201ENST00000299333 DYNC1I1O14576 645 aa17.37■□□□□ 0.37
SCN3B-201ENST00000299333 PPP2R1AP30153 589 aa17.37■□□□□ 0.37
SCN3B-201ENST00000299333 PAIP2Q9BPZ3 127 aaKnown RBP17.37■□□□□ 0.37
SCN3B-201ENST00000299333 TTC39AQ5SRH9 613 aa17.37■□□□□ 0.37
SCN3B-201ENST00000299333 NOL7Q9UMY1 257 aaKnown RBP17.36■□□□□ 0.37
SCN3B-201ENST00000299333 MVPQ14764 893 aaKnown RBP17.36■□□□□ 0.37
SCN3B-201ENST00000299333 SPA17Q15506 151 aa17.36■□□□□ 0.37
SCN3B-201ENST00000299333 SLC3A2P08195 630 aaKnown RBP17.36■□□□□ 0.37
SCN3B-201ENST00000299333 IMMTQ16891 758 aaKnown RBP17.36■□□□□ 0.37
SCN3B-201ENST00000299333 CWC27Q6UX04 472 aaKnown RBP17.36■□□□□ 0.37
SCN3B-201ENST00000299333 GOPCQ9HD26 462 aa17.36■□□□□ 0.37
SCN3B-201ENST00000299333 SSBP05455 408 aaKnown RBP eCLIP17.36■□□□□ 0.37
SCN3B-201ENST00000299333 LUZP1Q86V48 1076 aa17.36■□□□□ 0.37
SCN3B-201ENST00000299333 ZNF397Q8NF99 534 aaPredicted RBP17.36■□□□□ 0.37
SCN3B-201ENST00000299333 CEP63Q96MT8 703 aa17.36■□□□□ 0.37
SCN3B-201ENST00000299333 TOP1P11387 765 aaKnown RBP17.35■□□□□ 0.37
SCN3B-201ENST00000299333 SIL1Q9H173 461 aa17.35■□□□□ 0.37
SCN3B-201ENST00000299333 DNA2P51530 1060 aa17.35■□□□□ 0.37
SCN3B-201ENST00000299333 UBE4AQ14139 1066 aa17.35■□□□□ 0.37
SCN3B-201ENST00000299333 SMC1AQ14683 1233 aaKnown RBP17.35■□□□□ 0.37
SCN3B-201ENST00000299333 CTR9Q6PD62 1173 aa17.35■□□□□ 0.37
SCN3B-201ENST00000299333 CCDC175P0C221 793 aa17.34■□□□□ 0.37
SCN3B-201ENST00000299333 SLC4A2P04920 1241 aa17.34■□□□□ 0.37
SCN3B-201ENST00000299333 SSFA2P28290 1259 aa17.34■□□□□ 0.37
SCN3B-201ENST00000299333 BMS1Q14692 1282 aaKnown RBP17.34■□□□□ 0.37
SCN3B-201ENST00000299333 MIA2Q96PC5 1412 aa17.34■□□□□ 0.37
SCN3B-201ENST00000299333 ANO10Q9NW15 660 aa17.34■□□□□ 0.37
SCN3B-201ENST00000299333 FGD6Q6ZV73 1430 aa17.34■□□□□ 0.37
SCN3B-201ENST00000299333 CCDC158Q5M9N0 1113 aa17.34■□□□□ 0.37
SCN3B-201ENST00000299333 KIF21BO75037 1637 aa17.34■□□□□ 0.37
SCN3B-201ENST00000299333 CASTP20810 708 aaKnown RBP17.33■□□□□ 0.37
SCN3B-201ENST00000299333 PRKAR2BP31323 418 aa17.33■□□□□ 0.37
SCN3B-201ENST00000299333 CCDC178Q5BJE1 867 aa17.33■□□□□ 0.36
SCN3B-201ENST00000299333 ZNF428Q96B54 188 aa17.33■□□□□ 0.36
SCN3B-201ENST00000299333 MYOM3Q5VTT5 1437 aa17.33■□□□□ 0.36
SCN3B-201ENST00000299333 SMG6Q86US8 1419 aaKnown RBP17.33■□□□□ 0.36
SCN3B-201ENST00000299333 SARNPP82979 210 aaKnown RBP17.33■□□□□ 0.36
SCN3B-201ENST00000299333 TNPO1Q92973 898 aaKnown RBP17.33■□□□□ 0.36
SCN3B-201ENST00000299333 CCDC83Q8IWF9 413 aa17.32■□□□□ 0.36
SCN3B-201ENST00000299333 NBPF1Q3BBV0 1214 aa17.32■□□□□ 0.36
SCN3B-201ENST00000299333 ATF7IPQ6VMQ6 1270 aa17.32■□□□□ 0.36
SCN3B-201ENST00000299333 SKAP1Q86WV1 359 aa17.32■□□□□ 0.36
SCN3B-201ENST00000299333 CDKL5O76039 1030 aa17.32■□□□□ 0.36
SCN3B-201ENST00000299333 ADCY5O95622 1261 aa17.32■□□□□ 0.36
SCN3B-201ENST00000299333 KLHL10Q6JEL2 608 aa17.32■□□□□ 0.36
SCN3B-201ENST00000299333 CKAP2LQ8IYA6 745 aa17.32■□□□□ 0.36
SCN3B-201ENST00000299333 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.32■□□□□ 0.36
SCN3B-201ENST00000299333 CABP2Q9NPB3 220 aa17.32■□□□□ 0.36
SCN3B-201ENST00000299333 WWC2Q6AWC2 1192 aa17.32■□□□□ 0.36
SCN3B-201ENST00000299333 SPECC1Q5M775 1068 aa17.31■□□□□ 0.36
SCN3B-201ENST00000299333 RAPGEF4Q8WZA2 1011 aa17.31■□□□□ 0.36
SCN3B-201ENST00000299333 FAM177BA6PVY3 158 aa17.31■□□□□ 0.36
SCN3B-201ENST00000299333 CCDC57Q2TAC2 916 aa17.31■□□□□ 0.36
SCN3B-201ENST00000299333 SPATA24Q86W54 205 aa17.31■□□□□ 0.36
SCN3B-201ENST00000299333 CPLX3Q8WVH0 158 aa17.31■□□□□ 0.36
SCN3B-201ENST00000299333 BMP2KQ9NSY1 1161 aaPredicted RBP17.31■□□□□ 0.36
SCN3B-201ENST00000299333 MCM5P33992 734 aa17.3■□□□□ 0.36
SCN3B-201ENST00000299333 KRT222Q8N1A0 295 aa17.3■□□□□ 0.36
SCN3B-201ENST00000299333 VGLL3A8MV65 326 aa17.3■□□□□ 0.36
SCN3B-201ENST00000299333 GCOM1H8Y6P7 765 aaPredicted RBP17.3■□□□□ 0.36
SCN3B-201ENST00000299333 ATP2C2O75185 946 aa17.3■□□□□ 0.36
SCN3B-201ENST00000299333 MYZAPP0CAP1 466 aa17.3■□□□□ 0.36
SCN3B-201ENST00000299333 PSME1Q06323 249 aa17.3■□□□□ 0.36
SCN3B-201ENST00000299333 GSTTP1A0A1W2PQM5 241 aa17.3■□□□□ 0.36
SCN3B-201ENST00000299333 ATP2B2Q01814 1243 aa17.3■□□□□ 0.36
SCN3B-201ENST00000299333 SRCIN1Q9C0H9 1055 aa17.3■□□□□ 0.36
SCN3B-201ENST00000299333 POTEB2H3BUK9 544 aa17.3■□□□□ 0.36
SCN3B-201ENST00000299333 SOGA3Q5TF21 947 aa17.3■□□□□ 0.36
SCN3B-201ENST00000299333 STAC3Q96MF2 364 aa17.3■□□□□ 0.36
SCN3B-201ENST00000299333 PAFAH1B1P43034 410 aa17.29■□□□□ 0.36
SCN3B-201ENST00000299333 PRIMPOLQ96LW4 560 aa17.29■□□□□ 0.36
SCN3B-201ENST00000299333 SRRTQ9BXP5 876 aaKnown RBP17.29■□□□□ 0.36
SCN3B-201ENST00000299333 CPSF2Q9P2I0 782 aaKnown RBP17.29■□□□□ 0.36
SCN3B-201ENST00000299333 CCT4P50991 539 aaKnown RBP17.29■□□□□ 0.36
SCN3B-201ENST00000299333 SNW1Q13573 536 aaKnown RBP17.29■□□□□ 0.36
SCN3B-201ENST00000299333 CEP135Q66GS9 1140 aa17.29■□□□□ 0.36
SCN3B-201ENST00000299333 AACSQ86V21 672 aa17.29■□□□□ 0.36
SCN3B-201ENST00000299333 NACAP1Q9BZK3 213 aa17.28■□□□□ 0.36
SCN3B-201ENST00000299333 LRRC9Q6ZRR7 1453 aa17.28■□□□□ 0.36
SCN3B-201ENST00000299333 ZSWIM4Q9H7M6 989 aa17.28■□□□□ 0.36
SCN3B-201ENST00000299333 IL1RAPL2Q9NP60 686 aa17.28■□□□□ 0.36
SCN3B-201ENST00000299333 HLTFQ14527 1009 aaKnown RBP eCLIP17.28■□□□□ 0.36
SCN3B-201ENST00000299333 RSPH14Q9UHP6 348 aa17.28■□□□□ 0.36
SCN3B-201ENST00000299333 NEMFO60524 1076 aa17.28■□□□□ 0.36
SCN3B-201ENST00000299333 TBC1D2Q9BYX2 928 aa17.28■□□□□ 0.36
SCN3B-201ENST00000299333 CNNM1Q9NRU3 951 aa17.28■□□□□ 0.36
SCN3B-201ENST00000299333 NUTM2GQ5VZR2 741 aa17.27■□□□□ 0.36
SCN3B-201ENST00000299333 TMC6Q7Z403 805 aa17.27■□□□□ 0.36
SCN3B-201ENST00000299333 STAMBPO95630 424 aa17.27■□□□□ 0.36
SCN3B-201ENST00000299333 NUP88Q99567 741 aaPredicted RBP17.27■□□□□ 0.36
SCN3B-201ENST00000299333 PIBF1Q8WXW3 757 aa17.27■□□□□ 0.36
SCN3B-201ENST00000299333 LIG1P18858 919 aa17.27■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms