RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 LRRC37A3O60309 1634 aa21.24■□□□□ 0.99
CCDC40-201ENST00000269318 STRCQ7RTU9 1775 aa21.24■□□□□ 0.99
CCDC40-201ENST00000269318 HTATSF1O43719 755 aaKnown RBP21.24■□□□□ 0.99
CCDC40-201ENST00000269318 ARHGEF25Q86VW2 580 aa21.24■□□□□ 0.99
CCDC40-201ENST00000269318 ARHGAP45Q92619 1136 aa21.24■□□□□ 0.99
CCDC40-201ENST00000269318 DDX19BQ9UMR2 479 aa21.24■□□□□ 0.99
CCDC40-201ENST00000269318 KIAA0232Q92628 1395 aa21.24■□□□□ 0.99
CCDC40-201ENST00000269318 TMEM57Q8N5G2 664 aa21.23■□□□□ 0.99
CCDC40-201ENST00000269318 RTF1Q92541 710 aaKnown RBP21.23■□□□□ 0.99
CCDC40-201ENST00000269318 PDE4AP27815 886 aa21.22■□□□□ 0.99
CCDC40-201ENST00000269318 MSH6P52701 1360 aa21.22■□□□□ 0.99
CCDC40-201ENST00000269318 CADPS2Q86UW7 1296 aa21.21■□□□□ 0.99
CCDC40-201ENST00000269318 ITPRIPQ8IWB1 547 aa21.21■□□□□ 0.99
CCDC40-201ENST00000269318 BACH2Q9BYV9 841 aa21.21■□□□□ 0.99
CCDC40-201ENST00000269318 NBPF6Q5VWK0 638 aa21.21■□□□□ 0.99
CCDC40-201ENST00000269318 NBPF4Q96M43 638 aa21.21■□□□□ 0.99
CCDC40-201ENST00000269318 XIRP1Q702N8 1843 aaKnown RBP21.21■□□□□ 0.99
CCDC40-201ENST00000269318 USHBP1Q8N6Y0 703 aa21.2■□□□□ 0.98
CCDC40-201ENST00000269318 LMOD2Q6P5Q4 547 aa21.19■□□□□ 0.98
CCDC40-201ENST00000269318 NCAPD2Q15021 1401 aa21.19■□□□□ 0.98
CCDC40-201ENST00000269318 MED1Q15648 1581 aaPredicted RBP21.19■□□□□ 0.98
CCDC40-201ENST00000269318 GNAT3A8MTJ3 354 aa21.19■□□□□ 0.98
CCDC40-201ENST00000269318 KRT24Q2M2I5 525 aa21.19■□□□□ 0.98
CCDC40-201ENST00000269318 MAP3K5Q99683 1374 aa21.19■□□□□ 0.98
CCDC40-201ENST00000269318 ZBTB40Q9NUA8 1239 aa21.18■□□□□ 0.98
CCDC40-201ENST00000269318 HAP1P54257 671 aaPredicted RBP21.17■□□□□ 0.98
CCDC40-201ENST00000269318 RGPD2P0DJD1 1756 aa21.17■□□□□ 0.98
CCDC40-201ENST00000269318 ABCC4O15439 1325 aa21.17■□□□□ 0.98
CCDC40-201ENST00000269318 ZBTB7CA1YPR0 619 aa21.17■□□□□ 0.98
CCDC40-201ENST00000269318 RWDD1Q9H446 243 aaPredicted RBP21.17■□□□□ 0.98
CCDC40-201ENST00000269318 CAMTA1Q9Y6Y1 1673 aa21.16■□□□□ 0.98
CCDC40-201ENST00000269318 DDX17Q92841 729 aaKnown RBP21.16■□□□□ 0.98
CCDC40-201ENST00000269318 MIS18AQ9NYP9 233 aa21.16■□□□□ 0.98
CCDC40-201ENST00000269318 IL17REQ8NFR9 667 aa21.15■□□□□ 0.98
CCDC40-201ENST00000269318 TSPYL4Q9UJ04 414 aa21.15■□□□□ 0.98
CCDC40-201ENST00000269318 NPHP3Q7Z494 1330 aa21.15■□□□□ 0.98
CCDC40-201ENST00000269318 PXDNQ92626 1479 aa21.14■□□□□ 0.98
CCDC40-201ENST00000269318 LRRC59Q96AG4 307 aaKnown RBP21.14■□□□□ 0.98
CCDC40-201ENST00000269318 RGS3P49796 1198 aa21.14■□□□□ 0.97
CCDC40-201ENST00000269318 HDAC1Q13547 482 aaPredicted RBP21.14■□□□□ 0.97
CCDC40-201ENST00000269318 API5Q9BZZ5 524 aaKnown RBP21.13■□□□□ 0.97
CCDC40-201ENST00000269318 AXIN2Q9Y2T1 843 aa21.13■□□□□ 0.97
CCDC40-201ENST00000269318 PLEKHG5O94827 1062 aa21.12■□□□□ 0.97
CCDC40-201ENST00000269318 ANKRD24Q8TF21 1146 aa21.12■□□□□ 0.97
CCDC40-201ENST00000269318 TNS3Q68CZ2 1445 aa21.12■□□□□ 0.97
CCDC40-201ENST00000269318 CEMIPQ8WUJ3 1361 aa21.11■□□□□ 0.97
CCDC40-201ENST00000269318 RGS12O14924 1447 aa21.11■□□□□ 0.97
CCDC40-201ENST00000269318 ZBTB7BO15156 539 aaPredicted RBP21.11■□□□□ 0.97
CCDC40-201ENST00000269318 MSH5O43196 834 aa21.11■□□□□ 0.97
CCDC40-201ENST00000269318 BABAM1Q9NWV8 329 aa21.11■□□□□ 0.97
CCDC40-201ENST00000269318 LMO7Q8WWI1 1683 aa21.1■□□□□ 0.97
CCDC40-201ENST00000269318 ZNF335Q9H4Z2 1342 aaPredicted RBP21.09■□□□□ 0.97
CCDC40-201ENST00000269318 CRYBG1Q9Y4K1 1723 aa21.09■□□□□ 0.97
CCDC40-201ENST00000269318 C8orf34Q49A92 452 aa21.08■□□□□ 0.97
CCDC40-201ENST00000269318 CHMP4BQ9H444 224 aaKnown RBP21.08■□□□□ 0.97
CCDC40-201ENST00000269318 PDZRN3Q9UPQ7 1066 aa21.08■□□□□ 0.97
CCDC40-201ENST00000269318 RGPD5Q99666 1765 aa21.08■□□□□ 0.97
CCDC40-201ENST00000269318 TAF7Q15545 349 aaPredicted RBP21.08■□□□□ 0.96
CCDC40-201ENST00000269318 FAM161AQ3B820 660 aa21.08■□□□□ 0.96
CCDC40-201ENST00000269318 ERBB3P21860 1342 aa21.08■□□□□ 0.96
CCDC40-201ENST00000269318 SPATA31A3Q5VYP0 1347 aa21.08■□□□□ 0.96
CCDC40-201ENST00000269318 ZC3H6P61129 1189 aaKnown RBP21.07■□□□□ 0.96
CCDC40-201ENST00000269318 BRINP3Q76B58 766 aa21.07■□□□□ 0.96
CCDC40-201ENST00000269318 COL18A1P39060 1754 aa21.07■□□□□ 0.96
CCDC40-201ENST00000269318 PTPRCP08575 1304 aa21.07■□□□□ 0.96
CCDC40-201ENST00000269318 PLEKHO1Q53GL0 409 aaPredicted RBP21.06■□□□□ 0.96
CCDC40-201ENST00000269318 AMOTQ4VCS5 1084 aa21.05■□□□□ 0.96
CCDC40-201ENST00000269318 INTS3Q68E01 1043 aaKnown RBP21.05■□□□□ 0.96
CCDC40-201ENST00000269318 SMC5Q8IY18 1101 aa21.05■□□□□ 0.96
CCDC40-201ENST00000269318 SOS1Q07889 1333 aaPredicted RBP21.05■□□□□ 0.96
CCDC40-201ENST00000269318 AKAP4Q5JQC9 854 aa21.05■□□□□ 0.96
CCDC40-201ENST00000269318 ABCC6O95255 1503 aa21.04■□□□□ 0.96
CCDC40-201ENST00000269318 ANP32AP39687 249 aaKnown RBP21.04■□□□□ 0.96
CCDC40-201ENST00000269318 SLC4A2P04920 1241 aa21.03■□□□□ 0.96
CCDC40-201ENST00000269318 ZNF530Q6P9A1 599 aaPredicted RBP21.03■□□□□ 0.96
CCDC40-201ENST00000269318 LGR6Q9HBX8 967 aa21.03■□□□□ 0.96
CCDC40-201ENST00000269318 FAM208AQ9UK61 1670 aaKnown RBP21.02■□□□□ 0.96
CCDC40-201ENST00000269318 CABLES1Q8TDN4 633 aa21.02■□□□□ 0.96
CCDC40-201ENST00000269318 CPDO75976 1380 aa21.01■□□□□ 0.95
CCDC40-201ENST00000269318 OVOS2A0A0G2JMS6 1433 aa21.01■□□□□ 0.95
CCDC40-201ENST00000269318 SLAIN2Q9P270 581 aa21.01■□□□□ 0.95
CCDC40-201ENST00000269318 KDM3BQ7LBC6 1761 aa21.01■□□□□ 0.95
CCDC40-201ENST00000269318 G2E3Q7L622 706 aa20.99■□□□□ 0.95
CCDC40-201ENST00000269318 SOS2Q07890 1332 aaPredicted RBP20.99■□□□□ 0.95
CCDC40-201ENST00000269318 C1orf115Q9H7X2 142 aa20.99■□□□□ 0.95
CCDC40-201ENST00000269318 VIRMAQ69YN4 1812 aaKnown RBP20.99■□□□□ 0.95
CCDC40-201ENST00000269318 CCDC30Q5VVM6 783 aa20.98■□□□□ 0.95
CCDC40-201ENST00000269318 ADAMTS7Q9UKP4 1686 aa20.98■□□□□ 0.95
CCDC40-201ENST00000269318 SIRT2Q8IXJ6 389 aa20.97■□□□□ 0.95
CCDC40-201ENST00000269318 IPO9Q96P70 1041 aaKnown RBP20.97■□□□□ 0.95
CCDC40-201ENST00000269318 RNMTO43148 476 aaKnown RBP20.97■□□□□ 0.95
CCDC40-201ENST00000269318 C1orf141Q5JVX7 400 aa20.97■□□□□ 0.95
CCDC40-201ENST00000269318 MPRIPQ6WCQ1 1025 aa20.97■□□□□ 0.95
CCDC40-201ENST00000269318 STK31Q9BXU1 1019 aa20.97■□□□□ 0.95
CCDC40-201ENST00000269318 EIF4A1P60842 406 aaKnown RBP20.96■□□□□ 0.95
CCDC40-201ENST00000269318 NPM2Q86SE8 214 aaKnown RBP20.96■□□□□ 0.95
CCDC40-201ENST00000269318 NUCB1Q02818 461 aa20.95■□□□□ 0.94
CCDC40-201ENST00000269318 CHRNA2Q15822 529 aa20.95■□□□□ 0.94
CCDC40-201ENST00000269318 TEFQ10587 303 aa20.94■□□□□ 0.94
CCDC40-201ENST00000269318 NLRP2Q9NX02 1062 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms