RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 ANP32CO43423 234 aa17.12■□□□□ 0.33
SS18-202ENST00000269138 ZCRB1Q8TBF4 217 aaKnown RBP17.12■□□□□ 0.33
SS18-202ENST00000269138 DDX54Q8TDD1 881 aaKnown RBP17.11■□□□□ 0.33
SS18-202ENST00000269138 KDRP35968 1356 aa17.1■□□□□ 0.33
SS18-202ENST00000269138 NUDCQ9Y266 331 aa17.1■□□□□ 0.33
SS18-202ENST00000269138 U2AF1L5P0DN76 240 aaPredicted RBP17.09■□□□□ 0.33
SS18-202ENST00000269138 U2AF1Q01081 240 aaKnown RBP eCLIP17.09■□□□□ 0.332e-6■■■■□ 21.7
SS18-202ENST00000269138 CCDC184Q52MB2 194 aa17.09■□□□□ 0.33
SS18-202ENST00000269138 FAM196AQ6ZSG2 479 aa17.08■□□□□ 0.32
SS18-202ENST00000269138 CYP27B1O15528 508 aa17.07■□□□□ 0.32
SS18-202ENST00000269138 UPF1Q92900 1129 aaKnown RBP eCLIP17.07■□□□□ 0.32
SS18-202ENST00000269138 SOCS7O14512 581 aa17.06■□□□□ 0.32
SS18-202ENST00000269138 SPG7Q9UQ90 795 aa17.06■□□□□ 0.32
SS18-202ENST00000269138 PLEKHO1Q53GL0 409 aaPredicted RBP17.06■□□□□ 0.32
SS18-202ENST00000269138 RSPH6AQ9H0K4 717 aa17.06■□□□□ 0.32
SS18-202ENST00000269138 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.06■□□□□ 0.323e-7■■□□□ 13.5
SS18-202ENST00000269138 SHANK3Q9BYB0 1731 aa17.04■□□□□ 0.32
SS18-202ENST00000269138 PCDH11XQ9BZA7 1347 aa17.04■□□□□ 0.32
SS18-202ENST00000269138 PCDH11YQ9BZA8 1340 aa17.04■□□□□ 0.32
SS18-202ENST00000269138 TRIM37O94972 964 aa17.04■□□□□ 0.32
SS18-202ENST00000269138 PRKAR2BP31323 418 aa17.04■□□□□ 0.32
SS18-202ENST00000269138 PTF1AQ7RTS3 328 aa17.04■□□□□ 0.32
SS18-202ENST00000269138 ZNF530Q6P9A1 599 aaPredicted RBP17.03■□□□□ 0.32
SS18-202ENST00000269138 ACSBG1Q96GR2 724 aa17.03■□□□□ 0.32
SS18-202ENST00000269138 PHACTR3Q96KR7 559 aa17.03■□□□□ 0.32
SS18-202ENST00000269138 PKD1L3Q7Z443 1732 aa17.02■□□□□ 0.32
SS18-202ENST00000269138 KCNQ2O43526 872 aa17.02■□□□□ 0.32
SS18-202ENST00000269138 FCHSD2O94868 740 aa17.02■□□□□ 0.32
SS18-202ENST00000269138 AMOTQ4VCS5 1084 aa17.02■□□□□ 0.32
SS18-202ENST00000269138 DIEXFQ68CQ4 756 aaKnown RBP17.02■□□□□ 0.32
SS18-202ENST00000269138 EP400Q96L91 3159 aa17.02■□□□□ 0.32
SS18-202ENST00000269138 BCL9O00512 1426 aa17.02■□□□□ 0.31
SS18-202ENST00000269138 PHKG2P15735 406 aa17.01■□□□□ 0.31
SS18-202ENST00000269138 MTHFSDQ2M296 383 aaKnown RBP17.01■□□□□ 0.31
SS18-202ENST00000269138 IFNL2Q8IZJ0 200 aa17.01■□□□□ 0.31
SS18-202ENST00000269138 PLEKHG2Q9H7P9 1386 aa17■□□□□ 0.31
SS18-202ENST00000269138 NKX1-1Q15270 411 aaPredicted RBP17■□□□□ 0.31
SS18-202ENST00000269138 MRS2Q9HD23 443 aa17■□□□□ 0.31
SS18-202ENST00000269138 WDR43Q15061 677 aaKnown RBP eCLIP16.99■□□□□ 0.31
SS18-202ENST00000269138 ADAMTS8Q9UP79 889 aa16.99■□□□□ 0.31
SS18-202ENST00000269138 PRIM1P49642 420 aaKnown RBP16.98■□□□□ 0.31
SS18-202ENST00000269138 PLEKHF1Q96S99 279 aa16.98■□□□□ 0.31
SS18-202ENST00000269138 C1orf141Q5JVX7 400 aa16.97■□□□□ 0.31
SS18-202ENST00000269138 BCL11BQ9C0K0 894 aaPredicted RBP16.97■□□□□ 0.31
SS18-202ENST00000269138 MPRIPQ6WCQ1 1025 aa16.96■□□□□ 0.31
SS18-202ENST00000269138 DEFB132Q7Z7B7 95 aa16.96■□□□□ 0.31
SS18-202ENST00000269138 CCDC125Q86Z20 511 aa16.96■□□□□ 0.31
SS18-202ENST00000269138 SYTL4Q96C24 671 aaPredicted RBP16.96■□□□□ 0.31
SS18-202ENST00000269138 APBA3O96018 575 aa16.96■□□□□ 0.3
SS18-202ENST00000269138 SF3B2Q13435 895 aaKnown RBP16.96■□□□□ 0.3
SS18-202ENST00000269138 AKAP4Q5JQC9 854 aa16.96■□□□□ 0.3
SS18-202ENST00000269138 CCDC146Q8IYE0 955 aa16.96■□□□□ 0.3
SS18-202ENST00000269138 PNISRQ8TF01 805 aaKnown RBP16.96■□□□□ 0.3
SS18-202ENST00000269138 SBF2Q86WG5 1849 aa16.95■□□□□ 0.3
SS18-202ENST00000269138 GAS2L2Q8NHY3 880 aa16.95■□□□□ 0.3
SS18-202ENST00000269138 KDM6AO15550 1401 aaPredicted RBP16.94■□□□□ 0.3
SS18-202ENST00000269138 HSP90AB1P08238 724 aaKnown RBP16.94■□□□□ 0.3
SS18-202ENST00000269138 DCAF5Q96JK2 942 aa16.94■□□□□ 0.3
SS18-202ENST00000269138 LGR6Q9HBX8 967 aa16.94■□□□□ 0.3
SS18-202ENST00000269138 EN1Q05925 392 aaPredicted RBP16.93■□□□□ 0.3
SS18-202ENST00000269138 MIER1Q8N108 512 aa16.93■□□□□ 0.3
SS18-202ENST00000269138 DOT1LQ8TEK3 1739 aa16.93■□□□□ 0.3
SS18-202ENST00000269138 PNNQ9H307 717 aaKnown RBP16.92■□□□□ 0.3
SS18-202ENST00000269138 TNS1Q9HBL0 1735 aaKnown RBP16.92■□□□□ 0.3
SS18-202ENST00000269138 TOGARAM1Q9Y4F4 1720 aa16.92■□□□□ 0.3
SS18-202ENST00000269138 NHSQ6T4R5 1651 aa16.92■□□□□ 0.3
SS18-202ENST00000269138 GNAT3A8MTJ3 354 aa16.91■□□□□ 0.3
SS18-202ENST00000269138 RNMTO43148 476 aaKnown RBP16.91■□□□□ 0.3
SS18-202ENST00000269138 BAG6P46379 1132 aa16.91■□□□□ 0.3
SS18-202ENST00000269138 PIGBQ92521 554 aa16.91■□□□□ 0.3
SS18-202ENST00000269138 KAT6BQ8WYB5 2073 aa16.91■□□□□ 0.3
SS18-202ENST00000269138 MAPK8IP3Q9UPT6 1336 aa16.91■□□□□ 0.3
SS18-202ENST00000269138 MAP3K5Q99683 1374 aa16.91■□□□□ 0.3
SS18-202ENST00000269138 NEFMP07197 916 aa16.91■□□□□ 0.3
SS18-202ENST00000269138 IL17REQ8NFR9 667 aa16.91■□□□□ 0.3
SS18-202ENST00000269138 RUNDC1Q96C34 613 aa16.91■□□□□ 0.3
SS18-202ENST00000269138 ERVV-2B6SEH9 535 aa16.9■□□□□ 0.3
SS18-202ENST00000269138 EZH2Q15910 746 aaKnown RBP16.9■□□□□ 0.3
SS18-202ENST00000269138 NFE2L2Q16236 605 aa16.9■□□□□ 0.3
SS18-202ENST00000269138 CAMKK2Q96RR4 588 aa16.9■□□□□ 0.3
SS18-202ENST00000269138 CABP4P57796 275 aa16.89■□□□□ 0.29
SS18-202ENST00000269138 TMOD3Q9NYL9 352 aa16.89■□□□□ 0.29
SS18-202ENST00000269138 RRP7AQ9Y3A4 280 aaKnown RBP16.89■□□□□ 0.29
SS18-202ENST00000269138 DCTN1Q14203 1278 aa16.88■□□□□ 0.29
SS18-202ENST00000269138 NFATC2IPQ8NCF5 419 aa16.88■□□□□ 0.29
SS18-202ENST00000269138 CCER2I3L3R5 266 aa16.87■□□□□ 0.29
SS18-202ENST00000269138 PLSCR1O15162 318 aa16.87■□□□□ 0.29
SS18-202ENST00000269138 TMPOP42166 694 aaKnown RBP16.87■□□□□ 0.29
SS18-202ENST00000269138 MCM10Q7L590 875 aa16.87■□□□□ 0.29
SS18-202ENST00000269138 FAM9BQ8IZU0 186 aa16.87■□□□□ 0.29
SS18-202ENST00000269138 PROM2Q8N271 834 aa16.87■□□□□ 0.29
SS18-202ENST00000269138 SENP3-EIF4A1A0A087X0R7 540 aa16.86■□□□□ 0.29
SS18-202ENST00000269138 ASAP1Q9ULH1 1129 aa16.86■□□□□ 0.29
SS18-202ENST00000269138 BTAF1O14981 1849 aa16.86■□□□□ 0.29
SS18-202ENST00000269138 RIPK4P57078 832 aa16.86■□□□□ 0.29
SS18-202ENST00000269138 NEUROD2Q15784 382 aa16.86■□□□□ 0.29
SS18-202ENST00000269138 SLC52A2Q9HAB3 445 aa16.86■□□□□ 0.29
SS18-202ENST00000269138 ITGB4P16144 1822 aa16.85■□□□□ 0.29
SS18-202ENST00000269138 APAF1O14727 1248 aa16.85■□□□□ 0.29
SS18-202ENST00000269138 RTF1Q92541 710 aaKnown RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms