RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 ABCC6O95255 1503 aa14.16□□□□□ -0.14
MSH3-201ENST00000265081 HTATSF1O43719 755 aaKnown RBP14.16□□□□□ -0.14
MSH3-201ENST00000265081 TWISTNBQ3B726 338 aaPredicted RBP14.16□□□□□ -0.14
MSH3-201ENST00000265081 INTS3Q68E01 1043 aaKnown RBP14.16□□□□□ -0.14
MSH3-201ENST00000265081 PXDNLA1KZ92 1463 aa14.15□□□□□ -0.14
MSH3-201ENST00000265081 HSP90AB2PQ58FF8 381 aa14.15□□□□□ -0.14
MSH3-201ENST00000265081 FAM83GA6ND36 823 aa14.14□□□□□ -0.15
MSH3-201ENST00000265081 SULT6B1Q6IMI4 303 aa14.14□□□□□ -0.15
MSH3-201ENST00000265081 SOS1Q07889 1333 aaPredicted RBP14.14□□□□□ -0.15
MSH3-201ENST00000265081 SIRT2Q8IXJ6 389 aa14.14□□□□□ -0.15
MSH3-201ENST00000265081 GCC1Q96CN9 775 aa14.14□□□□□ -0.15
MSH3-201ENST00000265081 KCNA6P17658 529 aa14.13□□□□□ -0.15
MSH3-201ENST00000265081 API5Q9BZZ5 524 aaKnown RBP14.13□□□□□ -0.15
MSH3-201ENST00000265081 PTPRCP08575 1304 aa14.13□□□□□ -0.15
MSH3-201ENST00000265081 MSH6P52701 1360 aa14.13□□□□□ -0.15
MSH3-201ENST00000265081 NCOA3Q9Y6Q9 1424 aa14.13□□□□□ -0.15
MSH3-201ENST00000265081 BABAM1Q9NWV8 329 aa14.12□□□□□ -0.15
MSH3-201ENST00000265081 HAP1P54257 671 aaPredicted RBP14.12□□□□□ -0.15
MSH3-201ENST00000265081 OVOS2A0A0G2JMS6 1433 aa14.12□□□□□ -0.15
MSH3-201ENST00000265081 ANTXR1Q9H6X2 564 aa14.1□□□□□ -0.15
MSH3-201ENST00000265081 HOXC9P31274 260 aa14.1□□□□□ -0.15
MSH3-201ENST00000265081 CHD1LQ86WJ1 897 aa14.1□□□□□ -0.15
MSH3-201ENST00000265081 STRCP1A6NGW2 1772 aa14.1□□□□□ -0.15
MSH3-201ENST00000265081 CEMIPQ8WUJ3 1361 aa14.1□□□□□ -0.15
MSH3-201ENST00000265081 EYA1Q99502 592 aa14.1□□□□□ -0.15
MSH3-201ENST00000265081 NPHP4O75161 1426 aaPredicted RBP14.09□□□□□ -0.15
MSH3-201ENST00000265081 MTHFSDQ2M296 383 aaKnown RBP14.09□□□□□ -0.15
MSH3-201ENST00000265081 BMP2KLQ5H9B9 411 aa14.09□□□□□ -0.15
MSH3-201ENST00000265081 COL18A1P39060 1754 aa14.09□□□□□ -0.15
MSH3-201ENST00000265081 DCTN1Q14203 1278 aa14.09□□□□□ -0.15
MSH3-201ENST00000265081 RBM25P49756 843 aaKnown RBP14.08□□□□□ -0.16
MSH3-201ENST00000265081 PLPPR3Q6T4P5 718 aa14.07□□□□□ -0.16
MSH3-201ENST00000265081 GAS2L2Q8NHY3 880 aa14.07□□□□□ -0.16
MSH3-201ENST00000265081 LAS1LQ9Y4W2 734 aaKnown RBP14.06□□□□□ -0.16
MSH3-201ENST00000265081 PLEKHG2Q9H7P9 1386 aa14.06□□□□□ -0.16
MSH3-201ENST00000265081 DEKP35659 375 aaKnown RBP14.06□□□□□ -0.16
MSH3-201ENST00000265081 MAP3K5Q99683 1374 aa14.06□□□□□ -0.16
MSH3-201ENST00000265081 DCTPP1Q9H773 170 aa14.06□□□□□ -0.16
MSH3-201ENST00000265081 NBR1Q14596 966 aa14.05□□□□□ -0.16
MSH3-201ENST00000265081 MCM10Q7L590 875 aa14.05□□□□□ -0.16
MSH3-201ENST00000265081 RGPD5Q99666 1765 aa14.05□□□□□ -0.16
MSH3-201ENST00000265081 ANKLE2Q86XL3 938 aa14.05□□□□□ -0.16
MSH3-201ENST00000265081 ANKRD44Q8N8A2 993 aa14.05□□□□□ -0.16
MSH3-201ENST00000265081 NGDNQ8NEJ9 315 aaKnown RBP14.05□□□□□ -0.16
MSH3-201ENST00000265081 NFKBIBQ15653 356 aa14.04□□□□□ -0.16
MSH3-201ENST00000265081 XIRP1Q702N8 1843 aaKnown RBP14.04□□□□□ -0.16
MSH3-201ENST00000265081 SCN11AQ9UI33 1791 aa14.03□□□□□ -0.16
MSH3-201ENST00000265081 PKD1L3Q7Z443 1732 aa14.03□□□□□ -0.16
MSH3-201ENST00000265081 PARP4Q9UKK3 1724 aaKnown RBP14.03□□□□□ -0.16
MSH3-201ENST00000265081 DDIT3P35638 169 aa14.03□□□□□ -0.16
MSH3-201ENST00000265081 DCCP43146 1447 aa14.03□□□□□ -0.16
MSH3-201ENST00000265081 FOXO3O43524 673 aa14.02□□□□□ -0.17
MSH3-201ENST00000265081 SLC4A3P48751 1232 aa14.02□□□□□ -0.17
MSH3-201ENST00000265081 RPAP2Q8IXW5 612 aaPredicted RBP14.02□□□□□ -0.17
MSH3-201ENST00000265081 IP6K1Q92551 441 aa14.02□□□□□ -0.17
MSH3-201ENST00000265081 PHF8Q9UPP1 1060 aa14.02□□□□□ -0.17
MSH3-201ENST00000265081 NUTM2FA1L443 756 aa14.02□□□□□ -0.17
MSH3-201ENST00000265081 KRT24Q2M2I5 525 aa14.02□□□□□ -0.17
MSH3-201ENST00000265081 TBC1D2Q9BYX2 928 aa14.02□□□□□ -0.17
MSH3-201ENST00000265081 BECN1Q14457 450 aa14.01□□□□□ -0.17
MSH3-201ENST00000265081 CEP85Q6P2H3 762 aa14.01□□□□□ -0.17
MSH3-201ENST00000265081 SNX21Q969T3 373 aa14.01□□□□□ -0.17
MSH3-201ENST00000265081 UPF2Q9HAU5 1272 aaKnown RBP14.01□□□□□ -0.17
MSH3-201ENST00000265081 IBTKQ9P2D0 1353 aaPredicted RBP14.01□□□□□ -0.17
MSH3-201ENST00000265081 C22orf23Q9BZE7 217 aa14□□□□□ -0.17
MSH3-201ENST00000265081 GNAT3A8MTJ3 354 aa14□□□□□ -0.17
MSH3-201ENST00000265081 NLRP6P59044 892 aa14□□□□□ -0.17
MSH3-201ENST00000265081 KIF2CQ99661 725 aa14□□□□□ -0.17
MSH3-201ENST00000265081 HEG1Q9ULI3 1381 aa14□□□□□ -0.17
MSH3-201ENST00000265081 RTL5Q5HYW3 569 aaPredicted RBP14□□□□□ -0.17
MSH3-201ENST00000265081 AMPHP49418 695 aa13.99□□□□□ -0.17
MSH3-201ENST00000265081 ELL2O00472 640 aaPredicted RBP13.99□□□□□ -0.17
MSH3-201ENST00000265081 GLI3P10071 1580 aa13.99□□□□□ -0.17
MSH3-201ENST00000265081 PLEKHM2Q8IWE5 1019 aa13.98□□□□□ -0.17
MSH3-201ENST00000265081 IL17REQ8NFR9 667 aa13.98□□□□□ -0.17
MSH3-201ENST00000265081 C1orf115Q9H7X2 142 aa13.98□□□□□ -0.17
MSH3-201ENST00000265081 MRC1P22897 1456 aa13.98□□□□□ -0.17
MSH3-201ENST00000265081 SALL3Q9BXA9 1300 aa13.98□□□□□ -0.17
MSH3-201ENST00000265081 C1orf167Q5SNV9 1468 aa13.98□□□□□ -0.17
MSH3-201ENST00000265081 LNPKQ9C0E8 428 aa13.98□□□□□ -0.17
MSH3-201ENST00000265081 C5P01031 1676 aa13.98□□□□□ -0.17
MSH3-201ENST00000265081 GSPT1P15170 499 aaKnown RBP13.97□□□□□ -0.17
MSH3-201ENST00000265081 CCT4P50991 539 aaKnown RBP13.97□□□□□ -0.17
MSH3-201ENST00000265081 OSBPL3Q9H4L5 887 aa13.97□□□□□ -0.17
MSH3-201ENST00000265081 HOXB7P09629 217 aa13.97□□□□□ -0.17
MSH3-201ENST00000265081 KCNH5Q8NCM2 988 aa13.97□□□□□ -0.17
MSH3-201ENST00000265081 PXDNQ92626 1479 aa13.97□□□□□ -0.17
MSH3-201ENST00000265081 ABTB2Q8N961 1025 aa13.96□□□□□ -0.17
MSH3-201ENST00000265081 TSPYL4Q9UJ04 414 aa13.96□□□□□ -0.17
MSH3-201ENST00000265081 RTF1Q92541 710 aaKnown RBP13.96□□□□□ -0.18
MSH3-201ENST00000265081 ANKRD45Q5TZF3 282 aa13.95□□□□□ -0.18
MSH3-201ENST00000265081 TTC22Q5TAA0 569 aa13.95□□□□□ -0.18
MSH3-201ENST00000265081 LAMB4A4D0S4 1761 aa13.95□□□□□ -0.18
MSH3-201ENST00000265081 SLC4A2P04920 1241 aa13.95□□□□□ -0.18
MSH3-201ENST00000265081 G2E3Q7L622 706 aa13.95□□□□□ -0.18
MSH3-201ENST00000265081 ABCA3Q99758 1704 aa13.95□□□□□ -0.18
MSH3-201ENST00000265081 TBC1D9Q6ZT07 1266 aa13.94□□□□□ -0.18
MSH3-201ENST00000265081 PAPPAQ13219 1627 aa13.94□□□□□ -0.18
MSH3-201ENST00000265081 EIF5BO60841 1220 aaKnown RBP13.94□□□□□ -0.18
MSH3-201ENST00000265081 TAF7Q15545 349 aaPredicted RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms