RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 FOXD4L3Q6VB84 417 aaPredicted RBP26.4■■□□□ 1.82
TRIM28-201ENST00000253024 GAS2L3Q86XJ1 694 aa26.4■■□□□ 1.82
TRIM28-201ENST00000253024 PTCH1Q13635 1447 aa26.4■■□□□ 1.82
TRIM28-201ENST00000253024 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.4■■□□□ 1.822e-8■□□□□ 9.6
TRIM28-201ENST00000253024 DCTPP1Q9H773 170 aa26.39■■□□□ 1.82
TRIM28-201ENST00000253024 ANKRD26Q9UPS8 1709 aa26.39■■□□□ 1.81
TRIM28-201ENST00000253024 TTC22Q5TAA0 569 aa26.38■■□□□ 1.81
TRIM28-201ENST00000253024 CHL1O00533 1208 aa26.37■■□□□ 1.81
TRIM28-201ENST00000253024 BRPF1P55201 1214 aaPredicted RBP26.37■■□□□ 1.81
TRIM28-201ENST00000253024 CHMP4BQ9H444 224 aaKnown RBP26.37■■□□□ 1.81
TRIM28-201ENST00000253024 AK9Q5TCS8 1911 aa26.37■■□□□ 1.81
TRIM28-201ENST00000253024 DTNBO60941 627 aa26.37■■□□□ 1.81
TRIM28-201ENST00000253024 ZGPATQ8N5A5 531 aaKnown RBP26.36■■□□□ 1.81
TRIM28-201ENST00000253024 FKBP5Q13451 457 aaPredicted RBP26.35■■□□□ 1.81
TRIM28-201ENST00000253024 ANKRD44Q8N8A2 993 aa26.35■■□□□ 1.81
TRIM28-201ENST00000253024 CDK12Q9NYV4 1490 aaPredicted RBP26.35■■□□□ 1.81
TRIM28-201ENST00000253024 NLRP6P59044 892 aa26.35■■□□□ 1.81
TRIM28-201ENST00000253024 DDX11L8A8MPP1 907 aa26.34■■□□□ 1.81
TRIM28-201ENST00000253024 AMOTL2Q9Y2J4 779 aa26.34■■□□□ 1.81
TRIM28-201ENST00000253024 MCTP1Q6DN14 999 aa26.34■■□□□ 1.81
TRIM28-201ENST00000253024 SNX21Q969T3 373 aa26.34■■□□□ 1.81
TRIM28-201ENST00000253024 MAP4K4O95819 1239 aaPredicted RBP26.34■■□□□ 1.81
TRIM28-201ENST00000253024 FAM43AQ8N2R8 423 aa26.34■■□□□ 1.81
TRIM28-201ENST00000253024 RILPL2Q969X0 211 aa26.33■■□□□ 1.81
TRIM28-201ENST00000253024 EYA1Q99502 592 aa26.33■■□□□ 1.81
TRIM28-201ENST00000253024 GRPEL1Q9HAV7 217 aa26.33■■□□□ 1.81
TRIM28-201ENST00000253024 DLG5Q8TDM6 1919 aa26.33■■□□□ 1.81
TRIM28-201ENST00000253024 INTS3Q68E01 1043 aaKnown RBP26.33■■□□□ 1.81
TRIM28-201ENST00000253024 GBP4Q96PP9 640 aa26.33■■□□□ 1.81
TRIM28-201ENST00000253024 RAB3GAP1Q15042 981 aa26.32■■□□□ 1.8
TRIM28-201ENST00000253024 DDIT3P35638 169 aa26.31■■□□□ 1.8
TRIM28-201ENST00000253024 TRIM6-TRIM34B2RNG4 842 aa26.31■■□□□ 1.8
TRIM28-201ENST00000253024 EIF2S2P20042 333 aaKnown RBP26.31■■□□□ 1.8
TRIM28-201ENST00000253024 HDGFP51858 240 aaKnown RBP26.31■■□□□ 1.8
TRIM28-201ENST00000253024 RTL1A6NKG5 1358 aa26.3■■□□□ 1.8
TRIM28-201ENST00000253024 AATKQ6ZMQ8 1374 aa26.3■■□□□ 1.8
TRIM28-201ENST00000253024 TNRQ92752 1358 aa26.3■■□□□ 1.8
TRIM28-201ENST00000253024 PIK3R4Q99570 1358 aa26.3■■□□□ 1.8
TRIM28-201ENST00000253024 FSD2A1L4K1 749 aa26.3■■□□□ 1.8
TRIM28-201ENST00000253024 IL1RAPL2Q9NP60 686 aa26.3■■□□□ 1.8
TRIM28-201ENST00000253024 DDX49Q9Y6V7 483 aaKnown RBP26.3■■□□□ 1.8
TRIM28-201ENST00000253024 ANXA1P04083 346 aa26.29■■□□□ 1.8
TRIM28-201ENST00000253024 USP26Q9BXU7 913 aa26.29■■□□□ 1.8
TRIM28-201ENST00000253024 PNMA6EA0A0J9YXQ4 647 aa26.28■■□□□ 1.8
TRIM28-201ENST00000253024 RIMBP3CA6NJZ7 1639 aa26.28■■□□□ 1.8
TRIM28-201ENST00000253024 RIMBP3BA6NNM3 1639 aa26.28■■□□□ 1.8
TRIM28-201ENST00000253024 RIMBP3Q9UFD9 1639 aa26.28■■□□□ 1.8
TRIM28-201ENST00000253024 KNDC1Q76NI1 1749 aa26.27■■□□□ 1.8
TRIM28-201ENST00000253024 STK31Q9BXU1 1019 aa26.26■■□□□ 1.79
TRIM28-201ENST00000253024 ATP10DQ9P241 1426 aa26.26■■□□□ 1.79
TRIM28-201ENST00000253024 NAP1L5Q96NT1 182 aaPredicted RBP26.25■■□□□ 1.79
TRIM28-201ENST00000253024 TMEM2Q9UHN6 1383 aa26.25■■□□□ 1.79
TRIM28-201ENST00000253024 RGS12O14924 1447 aa26.25■■□□□ 1.79
TRIM28-201ENST00000253024 DLC1Q96QB1 1528 aa26.25■■□□□ 1.79
TRIM28-201ENST00000253024 RPAP2Q8IXW5 612 aaPredicted RBP26.25■■□□□ 1.79
TRIM28-201ENST00000253024 LARP6Q9BRS8 491 aaKnown RBP26.25■■□□□ 1.79
TRIM28-201ENST00000253024 CDC42BPGQ6DT37 1551 aa26.24■■□□□ 1.79
TRIM28-201ENST00000253024 BAG4O95429 457 aaKnown RBP26.23■■□□□ 1.79
TRIM28-201ENST00000253024 CAVIN1Q6NZI2 390 aaKnown RBP26.23■■□□□ 1.79
TRIM28-201ENST00000253024 RIMS1Q86UR5 1692 aaKnown RBP26.23■■□□□ 1.79
TRIM28-201ENST00000253024 NRXN3Q9Y4C0 1643 aa26.23■■□□□ 1.79
TRIM28-201ENST00000253024 MRE11P49959 708 aa26.22■■□□□ 1.79
TRIM28-201ENST00000253024 PHAXQ9H814 394 aaKnown RBP26.22■■□□□ 1.79
TRIM28-201ENST00000253024 RBM27Q9P2N5 1060 aaKnown RBP26.22■■□□□ 1.79
TRIM28-201ENST00000253024 LRRFIP2Q9Y608 721 aaKnown RBP26.22■■□□□ 1.79
TRIM28-201ENST00000253024 NEK4P51957 841 aa26.22■■□□□ 1.79
TRIM28-201ENST00000253024 ABTB2Q8N961 1025 aa26.22■■□□□ 1.79
TRIM28-201ENST00000253024 XPCQ01831 940 aaPredicted RBP26.22■■□□□ 1.79
TRIM28-201ENST00000253024 FLIIQ13045 1269 aa26.22■■□□□ 1.79
TRIM28-201ENST00000253024 NUTM1Q86Y26 1132 aa26.22■■□□□ 1.79
TRIM28-201ENST00000253024 UPF3BQ9BZI7 483 aaKnown RBP26.22■■□□□ 1.79
TRIM28-201ENST00000253024 CASC1Q6TDU7 716 aa26.21■■□□□ 1.79
TRIM28-201ENST00000253024 ANO2Q9NQ90 1003 aa26.21■■□□□ 1.79
TRIM28-201ENST00000253024 PDE1AP54750 535 aa26.21■■□□□ 1.79
TRIM28-201ENST00000253024 LMOD2Q6P5Q4 547 aa26.21■■□□□ 1.79
TRIM28-201ENST00000253024 EID1Q9Y6B2 187 aa26.21■■□□□ 1.79
TRIM28-201ENST00000253024 NCOA3Q9Y6Q9 1424 aa26.21■■□□□ 1.79
TRIM28-201ENST00000253024 UNC5CLQ8IV45 518 aa26.2■■□□□ 1.78
TRIM28-201ENST00000253024 DIP2BQ9P265 1576 aa26.2■■□□□ 1.78
TRIM28-201ENST00000253024 PRPF40AO75400 957 aaKnown RBP26.19■■□□□ 1.78
TRIM28-201ENST00000253024 RABEP1Q15276 862 aa26.19■■□□□ 1.78
TRIM28-201ENST00000253024 SPATA31D1Q6ZQQ2 1576 aa26.19■■□□□ 1.78
TRIM28-201ENST00000253024 USP6P35125 1406 aa26.19■■□□□ 1.78
TRIM28-201ENST00000253024 ERBB4Q15303 1308 aa26.19■■□□□ 1.78
TRIM28-201ENST00000253024 PALD1Q9ULE6 856 aa26.19■■□□□ 1.78
TRIM28-201ENST00000253024 PPP6R1Q9UPN7 881 aa26.19■■□□□ 1.78
TRIM28-201ENST00000253024 GNAI2P04899 355 aa26.18■■□□□ 1.78
TRIM28-201ENST00000253024 SETD1BQ9UPS6 1966 aaKnown RBP26.17■■□□□ 1.78
TRIM28-201ENST00000253024 GOLGA6L22H0YM25 854 aa26.17■■□□□ 1.78
TRIM28-201ENST00000253024 HMMRO75330 724 aa26.17■■□□□ 1.78
TRIM28-201ENST00000253024 TRIM44Q96DX7 344 aaPredicted RBP26.17■■□□□ 1.78
TRIM28-201ENST00000253024 IL17REQ8NFR9 667 aa26.16■■□□□ 1.78
TRIM28-201ENST00000253024 ADAMTS13Q76LX8 1427 aa26.16■■□□□ 1.78
TRIM28-201ENST00000253024 PLEKHG3A1L390 1219 aa26.16■■□□□ 1.78
TRIM28-201ENST00000253024 PTPRUQ92729 1446 aa26.16■■□□□ 1.78
TRIM28-201ENST00000253024 SETD1AO15047 1707 aaKnown RBP26.16■■□□□ 1.78
TRIM28-201ENST00000253024 PTPRCP08575 1304 aa26.16■■□□□ 1.78
TRIM28-201ENST00000253024 CRB1P82279 1406 aa26.16■■□□□ 1.78
TRIM28-201ENST00000253024 CIZ1Q9ULV3 898 aaPredicted RBP26.16■■□□□ 1.78
TRIM28-201ENST00000253024 ERC2O15083 957 aa26.14■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms